HEADER TRANSFERASE 03-JUL-19 6PNT TITLE STRUCTURAL CHARACTERIZATION OF UDP-GLYCOSYLTRANSFERASE FROM TITLE 2 TETRANYCHUS URTICAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLYCOSYLTRANSFERASE 202A2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRANYCHUS URTICAE; SOURCE 3 ORGANISM_COMMON: TWO-SPOTTED SPIDER MITE; SOURCE 4 ORGANISM_TAXID: 32264; SOURCE 5 GENE: 107367435, UGT202A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET100/D-TOPO KEYWDS URIDINE DIPHOSPHATE, UDP-GLYCOSYLTRANSFERASE, TWO-SPOTTED SPIDER KEYWDS 2 MITE, PESTICIDE DETOXIFICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DANESHIAN,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN,M.CHRUSZCZ REVDAT 2 11-OCT-23 6PNT 1 REMARK REVDAT 1 08-JUL-20 6PNT 0 JRNL AUTH L.DANESHIAN,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN,M.CHRUSZCZ JRNL TITL STRUCTURAL CHARACTERIZATION OF UDP-GLYCOSYLTRANSFERASE FROM JRNL TITL 2 TETRANYCHUS URTICAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3436 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3290 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4651 ; 2.042 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7660 ; 2.316 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.930 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.553 ;23.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;13.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;23.809 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 443 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3778 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3100 32.8680 -10.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.1169 REMARK 3 T33: 0.0034 T12: -0.0050 REMARK 3 T13: 0.0118 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.6058 L22: 2.3438 REMARK 3 L33: 1.6682 L12: -0.1116 REMARK 3 L13: -0.2138 L23: -0.6392 REMARK 3 S TENSOR REMARK 3 S11: 0.0899 S12: 0.1205 S13: -0.0429 REMARK 3 S21: -0.3809 S22: -0.0833 S23: 0.0149 REMARK 3 S31: 0.0777 S32: -0.0848 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6290 44.3420 4.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1226 REMARK 3 T33: 0.0076 T12: -0.0271 REMARK 3 T13: -0.0016 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.5881 L22: 1.4721 REMARK 3 L33: 0.2963 L12: -0.4287 REMARK 3 L13: -0.1900 L23: 0.2401 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.0730 S13: 0.0137 REMARK 3 S21: 0.0834 S22: -0.0021 S23: -0.0544 REMARK 3 S31: -0.0032 S32: 0.0239 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 260 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -29.9630 50.1370 -10.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.0931 REMARK 3 T33: 0.0808 T12: -0.0086 REMARK 3 T13: -0.0822 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.2761 L22: 0.5343 REMARK 3 L33: 1.1149 L12: 0.6128 REMARK 3 L13: 0.3026 L23: 0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: -0.0093 S13: 0.0586 REMARK 3 S21: -0.1730 S22: -0.0080 S23: 0.1644 REMARK 3 S31: -0.1038 S32: -0.0759 S33: 0.0890 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2780 54.9250 -13.2580 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.1486 REMARK 3 T33: 0.0523 T12: -0.0260 REMARK 3 T13: 0.0698 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 5.9786 L22: 6.0954 REMARK 3 L33: 0.2473 L12: -4.3242 REMARK 3 L13: 0.7609 L23: -1.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: 0.1950 S13: 0.3463 REMARK 3 S21: -0.6566 S22: -0.2142 S23: -0.5588 REMARK 3 S31: -0.0269 S32: 0.0798 S33: 0.0891 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 33.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% TACSIMATE PH 7.0, 0.1 M HEPES PH REMARK 280 7.0, 10% PEG 5000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.65100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.30200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.30200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.65100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 MET A 6 REMARK 465 ASN A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 GLY A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ASN A 258 CG OD1 ND2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 101 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 MET A 145 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 47 -149.11 -152.81 REMARK 500 ILE A 75 -57.21 82.65 REMARK 500 ASP A 152 48.20 -96.75 REMARK 500 LEU A 173 -2.41 79.85 REMARK 500 LYS A 241 156.06 -46.87 REMARK 500 ASN A 243 -6.47 84.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 6PNT A 1 437 UNP T1KUK4 T1KUK4_TETUR 1 437 SEQRES 1 A 437 MET ASN PRO GLU THR MET ASN GLU ASN GLY LYS SER LEU SEQRES 2 A 437 LYS ILE LEU PHE THR ALA LEU PHE GLY PRO GLY HIS LEU SEQRES 3 A 437 ASN ALA CYS LEU GLY ILE GLY SER LEU LEU ARG LYS ARG SEQRES 4 A 437 GLY HIS GLN ILE TYR PHE ALA HIS PHE PRO ARG HIS ARG SEQRES 5 A 437 ALA THR ILE GLU LYS HIS GLY PHE LEU PHE ILE SER LEU SEQRES 6 A 437 LEU ASP TYR ALA GLU PRO GLU PHE PRO ILE VAL ASP MET SEQRES 7 A 437 LEU PRO ASP ILE GLY ILE ILE ALA LYS PHE ALA PHE GLU SEQRES 8 A 437 ARG MET HIS LYS LEU THR PRO LEU GLU LEU PHE ARG HIS SEQRES 9 A 437 ALA SER GLY LYS HIS THR PHE ALA GLY MET VAL ASN GLY SEQRES 10 A 437 SER LYS GLY GLU ASN TYR ALA MET MET LYS ILE VAL LYS SEQRES 11 A 437 GLU TYR LYS PRO ASP VAL CYS LEU ALA ASP TYR LEU PHE SEQRES 12 A 437 ASN MET PRO TRP MET PHE THR VAL ASP CYS PRO VAL ILE SEQRES 13 A 437 PRO VAL LYS SER VAL ASN PRO ILE GLU LEU TYR ASN GLY SEQRES 14 A 437 PRO PRO ALA LEU THR GLY CYS SER ILE HIS ASP PRO PRO SEQRES 15 A 437 SER VAL ARG GLU GLU ILE GLU GLN LEU ALA ARG LYS SER SEQRES 16 A 437 GLU LEU GLU LEU GLU SER GLU LEU GLU LYS LEU PHE ALA SEQRES 17 A 437 HIS PHE ASN VAL PRO LEU VAL SER TYR ASN TYR ALA GLN SEQRES 18 A 437 GLN LEU GLY ILE TYR ILE TYR PRO GLY PRO LEU ASP TYR SEQRES 19 A 437 LYS GLU LEU GLY SER PRO LYS GLU ASN TRP VAL ARG LEU SEQRES 20 A 437 ASP SER SER ILE ARG SER THR GLU ILE SER ASN PHE GLU SEQRES 21 A 437 LEU PRO GLU LYS LEU LYS ASP LYS PRO GLY LYS LEU ILE SEQRES 22 A 437 TYR VAL SER MET GLY SER LEU ALA SER ALA VAL THR GLU SEQRES 23 A 437 LEU LEU THR MET ILE LEU THR PRO LEU ALA ASN SER PRO SEQRES 24 A 437 HIS ARG PHE ILE VAL SER THR GLY PRO ASN GLY ASP SER SEQRES 25 A 437 ILE LYS LEU TYR ASP ASN MET TRP GLY ASP LYS PHE ILE SEQRES 26 A 437 ASN GLN VAL ALA LEU LEU PRO LYS VAL ASP LEU PHE ILE SEQRES 27 A 437 THR HIS GLY GLY SER ASN SER LEU ILE GLU GLY LEU THR SEQRES 28 A 437 ALA GLY LYS PRO LEU ILE ALA ILE PRO GLN PHE GLY ASP SEQRES 29 A 437 GLN LEU ASP ASN ALA GLN ARG ILE ALA ASP LEU GLY LEU SEQRES 30 A 437 GLY VAL ARG LEU ASN LEU HIS GLU PHE SER GLY GLU LYS SEQRES 31 A 437 LEU LEU LYS ALA ILE GLU ASP VAL LEU ASN ASP GLU LYS SEQRES 32 A 437 ILE ASN ALA ASN VAL ALA ARG VAL SER GLU GLU LEU LYS SEQRES 33 A 437 LYS SER ASP SER LYS ASP LYS VAL ILE SER LEU ILE GLU SEQRES 34 A 437 LYS LEU ALA ARG ASP LYS LYS LEU FORMUL 2 HOH *379(H2 O) HELIX 1 AA1 GLY A 22 ARG A 39 1 18 HELIX 2 AA2 PHE A 48 ARG A 50 5 3 HELIX 3 AA3 HIS A 51 HIS A 58 1 8 HELIX 4 AA4 LEU A 66 ALA A 69 5 4 HELIX 5 AA5 ILE A 75 LEU A 79 5 5 HELIX 6 AA6 ASP A 81 LEU A 96 1 16 HELIX 7 AA7 THR A 97 ALA A 105 1 9 HELIX 8 AA8 PHE A 111 GLY A 117 5 7 HELIX 9 AA9 SER A 118 LYS A 133 1 16 HELIX 10 AB1 MET A 145 THR A 150 5 6 HELIX 11 AB2 ASN A 162 TYR A 167 5 6 HELIX 12 AB3 PRO A 181 ASN A 211 1 31 HELIX 13 AB4 PRO A 229 ASP A 233 5 5 HELIX 14 AB5 TYR A 234 GLY A 238 5 5 HELIX 15 AB6 PRO A 262 LYS A 266 5 5 HELIX 16 AB7 MET A 277 ALA A 283 1 7 HELIX 17 AB8 VAL A 284 ALA A 296 1 13 HELIX 18 AB9 ASN A 309 ILE A 313 5 5 HELIX 19 AC1 ASN A 326 LEU A 331 1 6 HELIX 20 AC2 PRO A 332 VAL A 334 5 3 HELIX 21 AC3 GLY A 342 ALA A 352 1 11 HELIX 22 AC4 ASP A 364 LEU A 375 1 12 HELIX 23 AC5 ASN A 382 PHE A 386 5 5 HELIX 24 AC6 SER A 387 ASN A 400 1 14 HELIX 25 AC7 ASP A 401 LYS A 417 1 17 HELIX 26 AC8 ASP A 419 LYS A 435 1 17 SHEET 1 AA1 7 LEU A 61 SER A 64 0 SHEET 2 AA1 7 GLN A 42 HIS A 47 1 N PHE A 45 O ILE A 63 SHEET 3 AA1 7 LYS A 14 ALA A 19 1 N PHE A 17 O ALA A 46 SHEET 4 AA1 7 VAL A 136 ASP A 140 1 O LEU A 138 N LEU A 16 SHEET 5 AA1 7 VAL A 155 LYS A 159 1 O ILE A 156 N CYS A 137 SHEET 6 AA1 7 GLY A 224 ILE A 227 1 O ILE A 225 N LYS A 159 SHEET 7 AA1 7 TRP A 244 LEU A 247 1 O LEU A 247 N TYR A 226 SHEET 1 AA2 6 MET A 319 ASP A 322 0 SHEET 2 AA2 6 ARG A 301 SER A 305 1 N VAL A 304 O TRP A 320 SHEET 3 AA2 6 LEU A 272 SER A 276 1 N ILE A 273 O ARG A 301 SHEET 4 AA2 6 LEU A 336 THR A 339 1 O ILE A 338 N TYR A 274 SHEET 5 AA2 6 LEU A 356 ALA A 358 1 O ILE A 357 N THR A 339 SHEET 6 AA2 6 GLY A 378 ARG A 380 1 O VAL A 379 N ALA A 358 CRYST1 77.481 77.481 130.953 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012906 0.007452 0.000000 0.00000 SCALE2 0.000000 0.014903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007636 0.00000