HEADER TRANSLOCASE 03-JUL-19 6PNV TITLE 1.42 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRANSLOCATION PROTEIN TITLE 2 TOLB FROM SALMONELLA ENTERICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOL-PAL SYSTEM PROTEIN TOLB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 1159899; SOURCE 5 STRAIN: LT2-4; SOURCE 6 VARIANT: ENTERICA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: GOLD(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, TRANSLOCATION PROTEIN TOLB., TRANSLOCASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,M.ENDRES, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 11-OCT-23 6PNV 1 REMARK REVDAT 1 17-JUL-19 6PNV 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,M.ENDRES, JRNL AUTH 2 K.J.F.SATCHELL, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 1.42 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF TRANSLOCATION JRNL TITL 2 PROTEIN TOLB FROM SALMONELLA ENTERICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 64124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3474 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 459 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3334 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3003 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4579 ; 1.423 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7017 ; 0.409 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 4.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;28.750 ;22.573 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ; 9.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.771 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3900 ; 0.053 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.049 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6337 ; 0.983 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9666 -2.5011 -12.0874 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: 0.0232 REMARK 3 T33: 0.0425 T12: 0.0071 REMARK 3 T13: 0.0095 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.7284 L22: 1.4464 REMARK 3 L33: 0.4725 L12: 0.4566 REMARK 3 L13: 0.0042 L23: -0.1487 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0222 S13: -0.0697 REMARK 3 S21: 0.0722 S22: -0.0134 S23: 0.0701 REMARK 3 S31: -0.0430 S32: -0.0523 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7741 15.7498 -8.9902 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0504 REMARK 3 T33: 0.0119 T12: -0.0083 REMARK 3 T13: 0.0004 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6869 L22: 1.0419 REMARK 3 L33: 1.3837 L12: 0.1374 REMARK 3 L13: 0.0230 L23: 0.5276 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.1353 S13: 0.0489 REMARK 3 S21: 0.0190 S22: 0.0288 S23: -0.0615 REMARK 3 S31: -0.0492 S32: 0.1646 S33: -0.0432 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8768 13.5150 -18.9907 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: 0.1374 REMARK 3 T33: 0.0798 T12: 0.0042 REMARK 3 T13: 0.0189 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.6889 L22: 1.6891 REMARK 3 L33: 2.9421 L12: 0.2276 REMARK 3 L13: 0.1379 L23: 0.3699 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.0437 S13: 0.0055 REMARK 3 S21: -0.0998 S22: 0.0403 S23: -0.2071 REMARK 3 S31: -0.0856 S32: 0.4286 S33: -0.0443 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0557 16.0668 -33.0393 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.0922 REMARK 3 T33: 0.0350 T12: 0.0143 REMARK 3 T13: 0.0399 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.2099 L22: 2.1025 REMARK 3 L33: 1.4323 L12: -0.4765 REMARK 3 L13: 0.7316 L23: -0.5398 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.1874 S13: 0.0692 REMARK 3 S21: -0.2322 S22: -0.0893 S23: -0.1169 REMARK 3 S31: 0.0091 S32: 0.2580 S33: 0.0765 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0470 18.0818 -22.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0195 REMARK 3 T33: 0.0158 T12: 0.0122 REMARK 3 T13: 0.0028 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.9198 L22: 1.0602 REMARK 3 L33: 0.5487 L12: -0.2570 REMARK 3 L13: -0.0852 L23: 0.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: 0.0760 S13: 0.0567 REMARK 3 S21: -0.0889 S22: -0.0348 S23: 0.0513 REMARK 3 S31: -0.0372 S32: -0.0488 S33: -0.0032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6PNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : BE REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : 0.62200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 5.2 MG/ML, 0.01M TRIS HCL (PH REMARK 280 8.3); SCREEN: PACT (G4), 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS REMARK 280 TRIS PROPANE PH 7.5, 20% (W/V) PEG 3350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.28500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 77.29 -153.70 REMARK 500 SER A 242 48.85 -147.20 REMARK 500 ARG A 245 -136.10 68.59 REMARK 500 ASP A 286 43.52 -152.89 REMARK 500 GLN A 301 -16.47 -140.49 REMARK 500 GLN A 301 -10.18 -143.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 268 OG REMARK 620 2 LEU A 269 O 97.2 REMARK 620 3 ASN A 270 OD1 123.5 83.9 REMARK 620 4 GLY A 287 O 78.5 174.6 101.2 REMARK 620 5 SER A 289 O 100.5 80.1 134.6 97.3 REMARK 620 6 HOH A 746 O 147.8 109.5 78.2 73.7 68.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 340 O REMARK 620 2 HOH A 785 O 85.9 REMARK 620 3 HOH A 836 O 117.9 109.0 REMARK 620 4 HOH A 882 O 84.3 169.9 73.9 REMARK 620 5 HOH A1037 O 175.8 93.0 58.7 96.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97710 RELATED DB: TARGETTRACK DBREF1 6PNV A 24 431 UNP A0A0D6H0D6_SALTM DBREF2 6PNV A A0A0D6H0D6 23 430 SEQADV 6PNV SER A 21 UNP A0A0D6H0D EXPRESSION TAG SEQADV 6PNV ASN A 22 UNP A0A0D6H0D EXPRESSION TAG SEQADV 6PNV ALA A 23 UNP A0A0D6H0D EXPRESSION TAG SEQRES 1 A 411 SER ASN ALA VAL ARG ILE GLU ILE THR GLN GLY VAL ASP SEQRES 2 A 411 SER ALA ARG PRO ILE GLY VAL VAL PRO PHE LYS TRP ALA SEQRES 3 A 411 GLY PRO GLY ALA ALA PRO GLU ASP ILE GLY GLY ILE VAL SEQRES 4 A 411 ALA ALA ASP LEU ARG ASN SER GLY LYS PHE ASN PRO LEU SEQRES 5 A 411 ASP ARG SER ARG LEU PRO GLN GLN PRO ALA THR ALA GLN SEQRES 6 A 411 GLU VAL GLN PRO THR ALA TRP SER ALA LEU GLY ILE ASP SEQRES 7 A 411 ALA VAL VAL VAL GLY GLN VAL THR PRO ASN PRO ASP GLY SEQRES 8 A 411 SER TYR ASN VAL ALA TYR GLN LEU VAL ASP THR GLY GLY SEQRES 9 A 411 ALA PRO GLY THR VAL LEU ALA GLN ASN SER TYR LYS VAL SEQRES 10 A 411 ASN LYS GLN TRP LEU ARG TYR ALA GLY HIS THR ALA SER SEQRES 11 A 411 ASP GLU VAL PHE GLU LYS LEU THR GLY ILE LYS GLY ALA SEQRES 12 A 411 PHE ARG THR ARG ILE ALA TYR VAL VAL GLN THR ASN GLY SEQRES 13 A 411 GLY GLN PHE PRO TYR GLU LEU ARG VAL SER ASP TYR ASP SEQRES 14 A 411 GLY TYR ASN GLN PHE VAL VAL HIS ARG SER PRO GLN PRO SEQRES 15 A 411 LEU MET SER PRO ALA TRP SER PRO ASP GLY SER LYS LEU SEQRES 16 A 411 ALA TYR VAL THR PHE GLU SER GLY ARG SER ALA LEU VAL SEQRES 17 A 411 ILE GLN THR LEU ALA ASN GLY ALA VAL ARG GLN VAL ALA SEQRES 18 A 411 SER PHE PRO ARG HIS ASN GLY ALA PRO ALA PHE SER PRO SEQRES 19 A 411 ASP GLY THR LYS LEU ALA PHE ALA LEU SER LYS THR GLY SEQRES 20 A 411 SER LEU ASN LEU TYR VAL MET ASP LEU ALA SER GLY GLN SEQRES 21 A 411 ILE ARG GLN ILE THR ASP GLY ARG SER ASN ASN THR GLU SEQRES 22 A 411 PRO THR TRP PHE PRO ASP SER GLN THR LEU ALA PHE THR SEQRES 23 A 411 SER ASP GLN ALA GLY ARG PRO GLN VAL TYR LYS MET ASN SEQRES 24 A 411 ILE ASN GLY GLY ALA ALA GLN ARG ILE THR TRP GLU GLY SEQRES 25 A 411 SER GLN ASN GLN ASP ALA ASP VAL SER SER ASP GLY LYS SEQRES 26 A 411 PHE MET VAL MET VAL SER SER ASN ASN GLY GLN GLN HIS SEQRES 27 A 411 ILE ALA LYS GLN ASP LEU VAL THR GLY GLY VAL GLN VAL SEQRES 28 A 411 LEU SER SER THR PHE LEU ASP GLU THR PRO SER LEU ALA SEQRES 29 A 411 PRO ASN GLY THR MET VAL ILE TYR SER SER SER GLN GLY SEQRES 30 A 411 MET GLY SER VAL LEU ASN LEU VAL SER THR ASP GLY ARG SEQRES 31 A 411 PHE LYS ALA ARG LEU PRO ALA THR ASP GLY GLN VAL LYS SEQRES 32 A 411 SER PRO ALA TRP SER PRO TYR LEU HET K A 501 1 HET NA A 502 1 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 2 K K 1+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *459(H2 O) HELIX 1 AA1 ASP A 54 SER A 66 1 13 HELIX 2 AA2 ASP A 73 LEU A 77 5 5 HELIX 3 AA3 GLN A 88 ALA A 94 1 7 HELIX 4 AA4 ASN A 138 GLN A 140 5 3 HELIX 5 AA5 TRP A 141 GLY A 159 1 19 SHEET 1 AA1 5 GLU A 27 GLN A 30 0 SHEET 2 AA1 5 LYS A 412 LEU A 415 -1 O ARG A 414 N GLU A 27 SHEET 3 AA1 5 SER A 400 SER A 406 -1 N LEU A 402 O LEU A 415 SHEET 4 AA1 5 MET A 389 SER A 395 -1 N TYR A 392 O ASN A 403 SHEET 5 AA1 5 ASP A 378 LEU A 383 -1 N SER A 382 O ILE A 391 SHEET 1 AA2 4 LYS A 44 TRP A 45 0 SHEET 2 AA2 4 ALA A 99 PRO A 107 1 O GLY A 103 N LYS A 44 SHEET 3 AA2 4 ARG A 36 VAL A 40 1 N GLY A 39 O VAL A 101 SHEET 4 AA2 4 PHE A 69 PRO A 71 1 O ASN A 70 N ARG A 36 SHEET 1 AA3 4 LYS A 44 TRP A 45 0 SHEET 2 AA3 4 ALA A 99 PRO A 107 1 O GLY A 103 N LYS A 44 SHEET 3 AA3 4 TYR A 113 ASP A 121 -1 O VAL A 120 N VAL A 100 SHEET 4 AA3 4 VAL A 129 VAL A 137 -1 O ALA A 131 N LEU A 119 SHEET 1 AA4 4 PHE A 194 SER A 199 0 SHEET 2 AA4 4 TYR A 181 ASP A 187 -1 N LEU A 183 O VAL A 196 SHEET 3 AA4 4 ARG A 167 GLN A 173 -1 N TYR A 170 O ARG A 184 SHEET 4 AA4 4 GLN A 421 TRP A 427 -1 O LYS A 423 N VAL A 171 SHEET 1 AA5 4 LEU A 203 TRP A 208 0 SHEET 2 AA5 4 LYS A 214 THR A 219 -1 O VAL A 218 N MET A 204 SHEET 3 AA5 4 ALA A 226 THR A 231 -1 O GLN A 230 N LEU A 215 SHEET 4 AA5 4 VAL A 237 ALA A 241 -1 O ALA A 241 N LEU A 227 SHEET 1 AA6 4 ASN A 247 PHE A 252 0 SHEET 2 AA6 4 LYS A 258 LEU A 263 -1 O ALA A 260 N ALA A 251 SHEET 3 AA6 4 ASN A 270 ASP A 275 -1 O MET A 274 N LEU A 259 SHEET 4 AA6 4 ILE A 281 GLN A 283 -1 O ARG A 282 N VAL A 273 SHEET 1 AA7 4 ASN A 291 TRP A 296 0 SHEET 2 AA7 4 THR A 302 SER A 307 -1 O ALA A 304 N THR A 295 SHEET 3 AA7 4 GLN A 314 ASN A 319 -1 O TYR A 316 N PHE A 305 SHEET 4 AA7 4 GLN A 326 ARG A 327 -1 O GLN A 326 N LYS A 317 SHEET 1 AA8 4 GLN A 334 VAL A 340 0 SHEET 2 AA8 4 PHE A 346 ASN A 353 -1 O VAL A 350 N GLN A 336 SHEET 3 AA8 4 GLN A 356 ASP A 363 -1 O HIS A 358 N SER A 351 SHEET 4 AA8 4 VAL A 369 VAL A 371 -1 O GLN A 370 N LYS A 361 LINK OG SER A 268 K K A 501 1555 1555 2.88 LINK O LEU A 269 K K A 501 1555 1555 2.91 LINK OD1 ASN A 270 K K A 501 1555 1555 2.61 LINK O GLY A 287 K K A 501 1555 1555 2.70 LINK O SER A 289 K K A 501 1555 1555 2.57 LINK O VAL A 340 NA NA A 502 1555 1555 2.38 LINK K K A 501 O HOH A 746 1555 1555 2.81 LINK NA NA A 502 O HOH A 785 1555 1555 2.15 LINK NA NA A 502 O HOH A 836 1555 1555 2.79 LINK NA NA A 502 O HOH A 882 1555 1555 2.03 LINK NA NA A 502 O HOH A1037 1555 1555 2.82 SITE 1 AC1 6 SER A 268 LEU A 269 ASN A 270 GLY A 287 SITE 2 AC1 6 SER A 289 HOH A 746 SITE 1 AC2 6 ASP A 339 VAL A 340 HOH A 785 HOH A 836 SITE 2 AC2 6 HOH A 882 HOH A1037 CRYST1 63.894 40.570 77.994 90.00 111.61 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015651 0.000000 0.006201 0.00000 SCALE2 0.000000 0.024649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013791 0.00000