HEADER TRANSFERASE 08-JUL-19 6PQB TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE-RESISTANCE METHYLTRANSFERASE RMTC TITLE 2 BOUND TO S-ADENOSYLHOMOCYSTEINE (SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16S RRNA (GUANINE(1405)-N(7))-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 16S RRNA M7G1405 METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.179; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 584; SOURCE 4 GENE: RMTC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET44 KEYWDS METHYLTRANSFERASE, RIBOSOME, AMINOGLYCOSIDE RESISTANCE, S- KEYWDS 2 ADENOSYLHOMOCYSTEINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NOSRATI,E.D.HOFFER,G.L.CONN REVDAT 4 11-OCT-23 6PQB 1 REMARK REVDAT 3 18-DEC-19 6PQB 1 REMARK REVDAT 2 27-NOV-19 6PQB 1 JRNL REVDAT 1 16-OCT-19 6PQB 0 JRNL AUTH M.NOSRATI,D.DEY,A.MEHRANI,S.E.STRASSLER,N.ZELINSKAYA, JRNL AUTH 2 E.D.HOFFER,S.M.STAGG,C.M.DUNHAM,G.L.CONN JRNL TITL FUNCTIONALLY CRITICAL RESIDUES IN THE AMINOGLYCOSIDE JRNL TITL 2 RESISTANCE-ASSOCIATED METHYLTRANSFERASE RMTC PLAY DISTINCT JRNL TITL 3 ROLES IN 30S SUBSTRATE RECOGNITION. JRNL REF J.BIOL.CHEM. V. 294 17642 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31594862 JRNL DOI 10.1074/JBC.RA119.011181 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8850 - 7.1771 0.99 2649 111 0.1854 0.2288 REMARK 3 2 7.1771 - 5.7016 1.00 2588 155 0.2350 0.2206 REMARK 3 3 5.7016 - 4.9823 1.00 2588 120 0.1862 0.2513 REMARK 3 4 4.9823 - 4.5274 1.00 2541 170 0.1552 0.1704 REMARK 3 5 4.5274 - 4.2033 1.00 2567 158 0.1585 0.1945 REMARK 3 6 4.2033 - 3.9557 1.00 2543 173 0.1721 0.2218 REMARK 3 7 3.9557 - 3.7577 1.00 2582 131 0.1978 0.2575 REMARK 3 8 3.7577 - 3.5942 1.00 2556 129 0.2407 0.2903 REMARK 3 9 3.5942 - 3.4559 1.00 2584 112 0.2497 0.2910 REMARK 3 10 3.4559 - 3.3367 1.00 2564 143 0.2948 0.3011 REMARK 3 11 3.3367 - 3.2325 1.00 2553 138 0.3258 0.3969 REMARK 3 12 3.2325 - 3.1401 1.00 2568 129 0.3582 0.4125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 134.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8806 REMARK 3 ANGLE : 0.474 11879 REMARK 3 CHIRALITY : 0.039 1339 REMARK 3 PLANARITY : 0.005 1494 REMARK 3 DIHEDRAL : 12.254 5400 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 136.1806 124.3803 23.0524 REMARK 3 T TENSOR REMARK 3 T11: 0.7763 T22: 0.8645 REMARK 3 T33: 0.9521 T12: -0.0281 REMARK 3 T13: -0.0348 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.8397 L22: 0.6461 REMARK 3 L33: 0.6218 L12: 0.6150 REMARK 3 L13: 0.4537 L23: 0.2001 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.1424 S13: -0.1673 REMARK 3 S21: 0.1004 S22: 0.0140 S23: -0.0338 REMARK 3 S31: -0.0091 S32: 0.2051 S33: -0.0307 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000242867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32552 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.140 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6CN0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M NA HEPES PH REMARK 280 7.0, 3 MM MELLITIC ACID, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.85000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.70000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.27500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 62 REMARK 465 GLY A 63 REMARK 465 ILE A 64 REMARK 465 ASN A 82 REMARK 465 PRO A 83 REMARK 465 THR A 84 REMARK 465 THR A 85 REMARK 465 ASP A 86 REMARK 465 GLU A 87 REMARK 465 ALA A 88 REMARK 465 THR A 237 REMARK 465 ILE A 238 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 ARG A 241 REMARK 465 ASP A 242 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 62 REMARK 465 GLY B 63 REMARK 465 ILE B 64 REMARK 465 THR B 237 REMARK 465 ILE B 238 REMARK 465 SER B 239 REMARK 465 GLY B 240 REMARK 465 ARG B 241 REMARK 465 ASP B 242 REMARK 465 VAL B 243 REMARK 465 GLY B 244 REMARK 465 MET B 245 REMARK 465 GLU B 246 REMARK 465 GLU B 247 REMARK 465 LEU B 281 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLY C 62 REMARK 465 GLY C 63 REMARK 465 PRO C 81 REMARK 465 ASN C 82 REMARK 465 PRO C 83 REMARK 465 THR C 84 REMARK 465 THR C 237 REMARK 465 ILE C 238 REMARK 465 SER C 239 REMARK 465 GLY C 240 REMARK 465 ARG C 241 REMARK 465 ASP C 242 REMARK 465 VAL C 243 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 GLY D 62 REMARK 465 GLY D 63 REMARK 465 ILE D 64 REMARK 465 HIS D 78 REMARK 465 GLU D 79 REMARK 465 ILE D 80 REMARK 465 PRO D 81 REMARK 465 ASN D 82 REMARK 465 PRO D 83 REMARK 465 THR D 84 REMARK 465 THR D 85 REMARK 465 ASP D 86 REMARK 465 ILE D 238 REMARK 465 SER D 239 REMARK 465 GLY D 240 REMARK 465 ARG D 241 REMARK 465 ASP D 242 REMARK 465 LEU D 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 281 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 33.12 -99.12 REMARK 500 ARG A 39 -70.46 -72.50 REMARK 500 VAL A 113 -1.36 64.26 REMARK 500 ALA A 138 -126.69 60.91 REMARK 500 MET A 202 61.20 -118.22 REMARK 500 LEU B 36 38.54 -93.23 REMARK 500 GLN B 44 76.47 -117.00 REMARK 500 HIS B 78 49.41 -95.97 REMARK 500 THR B 84 92.49 -62.12 REMARK 500 THR B 85 -48.95 -133.19 REMARK 500 ASN B 103 31.55 -91.23 REMARK 500 GLU B 110 4.35 -68.95 REMARK 500 VAL B 113 31.56 -88.58 REMARK 500 ALA B 114 -13.46 -148.07 REMARK 500 ALA B 138 -133.91 57.56 REMARK 500 SER B 143 24.64 -78.64 REMARK 500 LYS B 185 -169.40 -108.43 REMARK 500 MET B 202 60.52 -154.65 REMARK 500 LEU B 205 -33.63 -138.40 REMARK 500 GLN C 44 -9.68 72.19 REMARK 500 GLU C 79 34.61 -79.87 REMARK 500 ALA C 138 -130.17 58.36 REMARK 500 SER C 194 105.77 -57.23 REMARK 500 PRO D 42 0.73 -69.24 REMARK 500 TYR D 57 -157.78 -83.86 REMARK 500 LEU D 104 -76.13 -64.48 REMARK 500 ALA D 138 -126.12 59.12 REMARK 500 PHE D 142 31.95 -76.12 REMARK 500 ASP D 160 -158.32 -132.91 REMARK 500 MET D 202 79.12 -112.67 REMARK 500 ASN D 272 34.39 -88.74 REMARK 500 SER D 279 -157.70 -149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CN0 RELATED DB: PDB REMARK 900 SAME PROTEIN IN THE APO FORM REMARK 900 RELATED ID: 3FRH RELATED DB: PDB REMARK 900 SAME FAMILY OF ENZYMES REMARK 900 RELATED ID: 3LCV RELATED DB: PDB REMARK 900 SAME FAMILY OF ENZYMES REMARK 900 RELATED ID: 3FZG RELATED DB: PDB REMARK 900 SAME FAMILY OF ENZYMES DBREF 6PQB A 1 281 UNP Q33DX5 RMTC_PROMI 1 281 DBREF 6PQB B 1 281 UNP Q33DX5 RMTC_PROMI 1 281 DBREF 6PQB C 1 281 UNP Q33DX5 RMTC_PROMI 1 281 DBREF 6PQB D 1 281 UNP Q33DX5 RMTC_PROMI 1 281 SEQADV 6PQB GLY A -1 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB SER A 0 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB GLY B -1 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB SER B 0 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB GLY C -1 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB SER C 0 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB GLY D -1 UNP Q33DX5 EXPRESSION TAG SEQADV 6PQB SER D 0 UNP Q33DX5 EXPRESSION TAG SEQRES 1 A 283 GLY SER MET LYS THR ASN ASP ASN TYR ILE GLU GLU VAL SEQRES 2 A 283 THR ALA LYS VAL LEU THR SER GLY LYS TYR SER THR LEU SEQRES 3 A 283 TYR PRO PRO THR VAL ARG ARG VAL THR GLU ARG LEU PHE SEQRES 4 A 283 ASP ARG TYR PRO PRO LYS GLN LEU GLU LYS GLU VAL ARG SEQRES 5 A 283 LYS LYS LEU HIS GLN ALA TYR GLY ALA TYR ILE GLY GLY SEQRES 6 A 283 ILE ASP GLY LYS ARG LEU GLU LYS LYS ILE GLU LYS ILE SEQRES 7 A 283 ILE HIS GLU ILE PRO ASN PRO THR THR ASP GLU ALA THR SEQRES 8 A 283 ARG THR GLU TRP GLU LYS GLU ILE CYS LEU LYS ILE LEU SEQRES 9 A 283 ASN LEU HIS THR SER THR ASN GLU ARG THR VAL ALA TYR SEQRES 10 A 283 ASP GLU LEU TYR GLN LYS ILE PHE GLU VAL THR GLY VAL SEQRES 11 A 283 PRO THR SER ILE THR ASP ALA GLY CYS ALA LEU ASN PRO SEQRES 12 A 283 PHE SER PHE PRO PHE PHE THR GLU ALA GLY MET LEU GLY SEQRES 13 A 283 GLN TYR ILE GLY PHE ASP LEU ASP LYS GLY MET ILE GLU SEQRES 14 A 283 ALA ILE GLU HIS SER LEU ARG THR LEU ASN ALA PRO GLU SEQRES 15 A 283 GLY ILE VAL VAL LYS GLN GLY ASP ILE LEU SER ASP PRO SEQRES 16 A 283 SER GLY GLU SER ASP LEU LEU LEU MET PHE LYS LEU TYR SEQRES 17 A 283 THR LEU LEU ASP ARG GLN GLU GLU ALA SER GLY LEU LYS SEQRES 18 A 283 ILE LEU GLN GLU TRP LYS TYR LYS ASN ALA VAL ILE SER SEQRES 19 A 283 PHE PRO ILE LYS THR ILE SER GLY ARG ASP VAL GLY MET SEQRES 20 A 283 GLU GLU ASN TYR THR VAL LYS PHE GLU ASN ASP LEU VAL SEQRES 21 A 283 GLY SER ASP LEU ARG ILE MET GLN LYS LEU LYS LEU GLY SEQRES 22 A 283 ASN GLU MET TYR PHE ILE VAL SER ARG LEU SEQRES 1 B 283 GLY SER MET LYS THR ASN ASP ASN TYR ILE GLU GLU VAL SEQRES 2 B 283 THR ALA LYS VAL LEU THR SER GLY LYS TYR SER THR LEU SEQRES 3 B 283 TYR PRO PRO THR VAL ARG ARG VAL THR GLU ARG LEU PHE SEQRES 4 B 283 ASP ARG TYR PRO PRO LYS GLN LEU GLU LYS GLU VAL ARG SEQRES 5 B 283 LYS LYS LEU HIS GLN ALA TYR GLY ALA TYR ILE GLY GLY SEQRES 6 B 283 ILE ASP GLY LYS ARG LEU GLU LYS LYS ILE GLU LYS ILE SEQRES 7 B 283 ILE HIS GLU ILE PRO ASN PRO THR THR ASP GLU ALA THR SEQRES 8 B 283 ARG THR GLU TRP GLU LYS GLU ILE CYS LEU LYS ILE LEU SEQRES 9 B 283 ASN LEU HIS THR SER THR ASN GLU ARG THR VAL ALA TYR SEQRES 10 B 283 ASP GLU LEU TYR GLN LYS ILE PHE GLU VAL THR GLY VAL SEQRES 11 B 283 PRO THR SER ILE THR ASP ALA GLY CYS ALA LEU ASN PRO SEQRES 12 B 283 PHE SER PHE PRO PHE PHE THR GLU ALA GLY MET LEU GLY SEQRES 13 B 283 GLN TYR ILE GLY PHE ASP LEU ASP LYS GLY MET ILE GLU SEQRES 14 B 283 ALA ILE GLU HIS SER LEU ARG THR LEU ASN ALA PRO GLU SEQRES 15 B 283 GLY ILE VAL VAL LYS GLN GLY ASP ILE LEU SER ASP PRO SEQRES 16 B 283 SER GLY GLU SER ASP LEU LEU LEU MET PHE LYS LEU TYR SEQRES 17 B 283 THR LEU LEU ASP ARG GLN GLU GLU ALA SER GLY LEU LYS SEQRES 18 B 283 ILE LEU GLN GLU TRP LYS TYR LYS ASN ALA VAL ILE SER SEQRES 19 B 283 PHE PRO ILE LYS THR ILE SER GLY ARG ASP VAL GLY MET SEQRES 20 B 283 GLU GLU ASN TYR THR VAL LYS PHE GLU ASN ASP LEU VAL SEQRES 21 B 283 GLY SER ASP LEU ARG ILE MET GLN LYS LEU LYS LEU GLY SEQRES 22 B 283 ASN GLU MET TYR PHE ILE VAL SER ARG LEU SEQRES 1 C 283 GLY SER MET LYS THR ASN ASP ASN TYR ILE GLU GLU VAL SEQRES 2 C 283 THR ALA LYS VAL LEU THR SER GLY LYS TYR SER THR LEU SEQRES 3 C 283 TYR PRO PRO THR VAL ARG ARG VAL THR GLU ARG LEU PHE SEQRES 4 C 283 ASP ARG TYR PRO PRO LYS GLN LEU GLU LYS GLU VAL ARG SEQRES 5 C 283 LYS LYS LEU HIS GLN ALA TYR GLY ALA TYR ILE GLY GLY SEQRES 6 C 283 ILE ASP GLY LYS ARG LEU GLU LYS LYS ILE GLU LYS ILE SEQRES 7 C 283 ILE HIS GLU ILE PRO ASN PRO THR THR ASP GLU ALA THR SEQRES 8 C 283 ARG THR GLU TRP GLU LYS GLU ILE CYS LEU LYS ILE LEU SEQRES 9 C 283 ASN LEU HIS THR SER THR ASN GLU ARG THR VAL ALA TYR SEQRES 10 C 283 ASP GLU LEU TYR GLN LYS ILE PHE GLU VAL THR GLY VAL SEQRES 11 C 283 PRO THR SER ILE THR ASP ALA GLY CYS ALA LEU ASN PRO SEQRES 12 C 283 PHE SER PHE PRO PHE PHE THR GLU ALA GLY MET LEU GLY SEQRES 13 C 283 GLN TYR ILE GLY PHE ASP LEU ASP LYS GLY MET ILE GLU SEQRES 14 C 283 ALA ILE GLU HIS SER LEU ARG THR LEU ASN ALA PRO GLU SEQRES 15 C 283 GLY ILE VAL VAL LYS GLN GLY ASP ILE LEU SER ASP PRO SEQRES 16 C 283 SER GLY GLU SER ASP LEU LEU LEU MET PHE LYS LEU TYR SEQRES 17 C 283 THR LEU LEU ASP ARG GLN GLU GLU ALA SER GLY LEU LYS SEQRES 18 C 283 ILE LEU GLN GLU TRP LYS TYR LYS ASN ALA VAL ILE SER SEQRES 19 C 283 PHE PRO ILE LYS THR ILE SER GLY ARG ASP VAL GLY MET SEQRES 20 C 283 GLU GLU ASN TYR THR VAL LYS PHE GLU ASN ASP LEU VAL SEQRES 21 C 283 GLY SER ASP LEU ARG ILE MET GLN LYS LEU LYS LEU GLY SEQRES 22 C 283 ASN GLU MET TYR PHE ILE VAL SER ARG LEU SEQRES 1 D 283 GLY SER MET LYS THR ASN ASP ASN TYR ILE GLU GLU VAL SEQRES 2 D 283 THR ALA LYS VAL LEU THR SER GLY LYS TYR SER THR LEU SEQRES 3 D 283 TYR PRO PRO THR VAL ARG ARG VAL THR GLU ARG LEU PHE SEQRES 4 D 283 ASP ARG TYR PRO PRO LYS GLN LEU GLU LYS GLU VAL ARG SEQRES 5 D 283 LYS LYS LEU HIS GLN ALA TYR GLY ALA TYR ILE GLY GLY SEQRES 6 D 283 ILE ASP GLY LYS ARG LEU GLU LYS LYS ILE GLU LYS ILE SEQRES 7 D 283 ILE HIS GLU ILE PRO ASN PRO THR THR ASP GLU ALA THR SEQRES 8 D 283 ARG THR GLU TRP GLU LYS GLU ILE CYS LEU LYS ILE LEU SEQRES 9 D 283 ASN LEU HIS THR SER THR ASN GLU ARG THR VAL ALA TYR SEQRES 10 D 283 ASP GLU LEU TYR GLN LYS ILE PHE GLU VAL THR GLY VAL SEQRES 11 D 283 PRO THR SER ILE THR ASP ALA GLY CYS ALA LEU ASN PRO SEQRES 12 D 283 PHE SER PHE PRO PHE PHE THR GLU ALA GLY MET LEU GLY SEQRES 13 D 283 GLN TYR ILE GLY PHE ASP LEU ASP LYS GLY MET ILE GLU SEQRES 14 D 283 ALA ILE GLU HIS SER LEU ARG THR LEU ASN ALA PRO GLU SEQRES 15 D 283 GLY ILE VAL VAL LYS GLN GLY ASP ILE LEU SER ASP PRO SEQRES 16 D 283 SER GLY GLU SER ASP LEU LEU LEU MET PHE LYS LEU TYR SEQRES 17 D 283 THR LEU LEU ASP ARG GLN GLU GLU ALA SER GLY LEU LYS SEQRES 18 D 283 ILE LEU GLN GLU TRP LYS TYR LYS ASN ALA VAL ILE SER SEQRES 19 D 283 PHE PRO ILE LYS THR ILE SER GLY ARG ASP VAL GLY MET SEQRES 20 D 283 GLU GLU ASN TYR THR VAL LYS PHE GLU ASN ASP LEU VAL SEQRES 21 D 283 GLY SER ASP LEU ARG ILE MET GLN LYS LEU LYS LEU GLY SEQRES 22 D 283 ASN GLU MET TYR PHE ILE VAL SER ARG LEU HET SAH A 301 26 HET SAH B 301 26 HET SAH C 301 26 HET SAH D 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 9 HOH *9(H2 O) HELIX 1 AA1 THR A 3 SER A 18 1 16 HELIX 2 AA2 GLY A 19 SER A 22 5 4 HELIX 3 AA3 TYR A 25 TYR A 40 1 16 HELIX 4 AA4 GLN A 44 TYR A 57 1 14 HELIX 5 AA5 GLY A 66 ILE A 77 1 12 HELIX 6 AA6 ARG A 90 ASN A 103 1 14 HELIX 7 AA7 HIS A 105 GLU A 110 1 6 HELIX 8 AA8 ALA A 114 GLY A 127 1 14 HELIX 9 AA9 LEU A 139 PHE A 142 5 4 HELIX 10 AB1 SER A 143 THR A 148 1 6 HELIX 11 AB2 ASP A 162 LEU A 176 1 15 HELIX 12 AB3 LEU A 205 GLU A 213 1 9 HELIX 13 AB4 SER A 216 TRP A 224 1 9 HELIX 14 AB5 TYR A 249 LEU A 257 1 9 HELIX 15 AB6 ASN B 4 SER B 18 1 15 HELIX 16 AB7 TYR B 25 LEU B 36 1 12 HELIX 17 AB8 PRO B 41 LYS B 43 5 3 HELIX 18 AB9 GLN B 44 TYR B 57 1 14 HELIX 19 AC1 GLY B 58 ILE B 61 5 4 HELIX 20 AC2 GLY B 66 HIS B 78 1 13 HELIX 21 AC3 GLU B 87 ASN B 103 1 17 HELIX 22 AC4 ARG B 111 TYR B 115 5 5 HELIX 23 AC5 GLU B 117 GLY B 127 1 11 HELIX 24 AC6 LEU B 139 PHE B 142 5 4 HELIX 25 AC7 SER B 143 ALA B 150 1 8 HELIX 26 AC8 ASP B 162 LEU B 176 1 15 HELIX 27 AC9 LEU B 205 GLU B 213 1 9 HELIX 28 AD1 ALA B 215 TRP B 224 1 10 HELIX 29 AD2 TYR B 249 VAL B 258 1 10 HELIX 30 AD3 ASP C 5 LEU C 16 1 12 HELIX 31 AD4 TYR C 25 LEU C 36 1 12 HELIX 32 AD5 GLN C 44 TYR C 57 1 14 HELIX 33 AD6 ASP C 65 ILE C 77 1 13 HELIX 34 AD7 ASP C 86 ASN C 103 1 18 HELIX 35 AD8 HIS C 105 THR C 112 1 8 HELIX 36 AD9 ALA C 114 GLY C 127 1 14 HELIX 37 AE1 LEU C 139 PHE C 142 5 4 HELIX 38 AE2 SER C 143 THR C 148 1 6 HELIX 39 AE3 ASP C 162 LEU C 176 1 15 HELIX 40 AE4 LEU C 205 GLU C 213 1 9 HELIX 41 AE5 ALA C 215 TRP C 224 1 10 HELIX 42 AE6 ASN C 248 LEU C 257 1 10 HELIX 43 AE7 TYR D 7 LEU D 16 1 10 HELIX 44 AE8 TYR D 25 TYR D 40 1 16 HELIX 45 AE9 LYS D 43 ALA D 56 1 14 HELIX 46 AF1 LYS D 67 LYS D 75 1 9 HELIX 47 AF2 ALA D 88 LEU D 102 1 15 HELIX 48 AF3 HIS D 105 ARG D 111 1 7 HELIX 49 AF4 ALA D 114 GLY D 127 1 14 HELIX 50 AF5 LEU D 139 PHE D 142 5 4 HELIX 51 AF6 SER D 143 GLY D 151 1 9 HELIX 52 AF7 ASP D 162 THR D 175 1 14 HELIX 53 AF8 LEU D 205 GLU D 213 1 9 HELIX 54 AF9 ALA D 215 TRP D 224 1 10 HELIX 55 AG1 GLU D 247 LEU D 257 1 11 SHEET 1 AA1 7 ILE A 182 GLN A 186 0 SHEET 2 AA1 7 GLN A 155 ASP A 160 1 N TYR A 156 O VAL A 183 SHEET 3 AA1 7 SER A 131 ALA A 135 1 N ILE A 132 O ILE A 157 SHEET 4 AA1 7 GLU A 196 PHE A 203 1 O LEU A 201 N THR A 133 SHEET 5 AA1 7 LYS A 225 PRO A 234 1 O VAL A 230 N MET A 202 SHEET 6 AA1 7 GLU A 273 SER A 279 -1 O VAL A 278 N ALA A 229 SHEET 7 AA1 7 ARG A 263 LEU A 270 -1 N LEU A 268 O TYR A 275 SHEET 1 AA2 7 ILE B 182 GLN B 186 0 SHEET 2 AA2 7 GLN B 155 ASP B 160 1 N TYR B 156 O VAL B 183 SHEET 3 AA2 7 SER B 131 ALA B 135 1 N ILE B 132 O ILE B 157 SHEET 4 AA2 7 GLU B 196 MET B 202 1 O LEU B 201 N THR B 133 SHEET 5 AA2 7 LYS B 225 PRO B 234 1 O VAL B 230 N LEU B 200 SHEET 6 AA2 7 GLU B 273 SER B 279 -1 O VAL B 278 N ALA B 229 SHEET 7 AA2 7 ARG B 263 LEU B 270 -1 N LEU B 268 O TYR B 275 SHEET 1 AA3 7 ILE C 182 GLN C 186 0 SHEET 2 AA3 7 GLN C 155 ASP C 160 1 N TYR C 156 O VAL C 183 SHEET 3 AA3 7 SER C 131 ALA C 135 1 N ILE C 132 O ILE C 157 SHEET 4 AA3 7 GLU C 196 PHE C 203 1 O LEU C 201 N THR C 133 SHEET 5 AA3 7 LYS C 225 PRO C 234 1 O VAL C 230 N MET C 202 SHEET 6 AA3 7 GLU C 273 SER C 279 -1 O VAL C 278 N ALA C 229 SHEET 7 AA3 7 ARG C 263 LEU C 270 -1 N LEU C 268 O TYR C 275 SHEET 1 AA4 7 VAL D 183 GLN D 186 0 SHEET 2 AA4 7 GLN D 155 ASP D 160 1 N TYR D 156 O VAL D 183 SHEET 3 AA4 7 SER D 131 ALA D 135 1 N ILE D 132 O ILE D 157 SHEET 4 AA4 7 GLU D 196 MET D 202 1 O LEU D 201 N THR D 133 SHEET 5 AA4 7 LYS D 225 PRO D 234 1 O LYS D 225 N SER D 197 SHEET 6 AA4 7 GLU D 273 SER D 279 -1 O PHE D 276 N ILE D 231 SHEET 7 AA4 7 ARG D 263 GLN D 266 -1 N GLN D 266 O ILE D 277 SHEET 1 AA5 7 VAL D 183 GLN D 186 0 SHEET 2 AA5 7 GLN D 155 ASP D 160 1 N TYR D 156 O VAL D 183 SHEET 3 AA5 7 SER D 131 ALA D 135 1 N ILE D 132 O ILE D 157 SHEET 4 AA5 7 GLU D 196 MET D 202 1 O LEU D 201 N THR D 133 SHEET 5 AA5 7 LYS D 225 PRO D 234 1 O LYS D 225 N SER D 197 SHEET 6 AA5 7 GLU D 273 SER D 279 -1 O PHE D 276 N ILE D 231 SHEET 7 AA5 7 LYS D 269 LEU D 270 -1 N LEU D 270 O GLU D 273 SITE 1 AC1 14 TYR A 60 SER A 107 THR A 108 ARG A 111 SITE 2 AC1 14 GLY A 136 CYS A 137 ALA A 138 ASP A 160 SITE 3 AC1 14 LEU A 161 ASP A 188 ILE A 189 PHE A 203 SITE 4 AC1 14 LEU A 205 GLN A 212 SITE 1 AC2 13 TYR B 60 SER B 107 THR B 108 ARG B 111 SITE 2 AC2 13 GLY B 136 CYS B 137 ALA B 138 ASP B 160 SITE 3 AC2 13 LEU B 161 ASP B 188 ILE B 189 PHE B 203 SITE 4 AC2 13 GLN B 212 SITE 1 AC3 12 TYR C 60 SER C 107 THR C 108 ARG C 111 SITE 2 AC3 12 GLY C 136 CYS C 137 ALA C 138 ASP C 160 SITE 3 AC3 12 LEU C 161 ASP C 188 PHE C 203 GLN C 212 SITE 1 AC4 14 TYR D 60 SER D 107 THR D 108 ARG D 111 SITE 2 AC4 14 GLY D 136 CYS D 137 ASP D 160 GLY D 187 SITE 3 AC4 14 ASP D 188 ILE D 189 PHE D 203 LEU D 205 SITE 4 AC4 14 LEU D 208 GLN D 212 CRYST1 163.540 163.540 122.550 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006115 0.003530 0.000000 0.00000 SCALE2 0.000000 0.007061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008160 0.00000