HEADER MEMBRANE PROTEIN/AGONIST 14-JUL-19 6PT2 TITLE CRYSTAL STRUCTURE OF THE ACTIVE DELTA OPIOID RECEPTOR IN COMPLEX WITH TITLE 2 THE PEPTIDE AGONIST KGCHM07 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELTA OPIOID RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE AGONIST KGCHM07; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS MEMBRANE PROTEIN, G PROTEIN-COUPLED RECEPTOR, GPCR, DOP, DOR, PEPTIDE KEYWDS 2 AGONIST, ACTIVE DOP-KGCHM07 STRUCTURE, LCP, MEMBRANE PROTEIN-AGONIST KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.CLAFF,J.YU,V.BLAIS,N.PATEL,C.MARTIN,L.WU,G.W.HAN,B.J.HOLLERAN,O.VAN AUTHOR 2 DER POORTEN,M.A.HANSON,P.SARRET,L.GENDRON,V.CHEREZOV,V.KATRITCH, AUTHOR 3 S.BALLET,Z.LIU,C.E.MULLER,R.C.STEVENS REVDAT 4 15-NOV-23 6PT2 1 LINK REVDAT 3 11-OCT-23 6PT2 1 REMARK REVDAT 2 18-DEC-19 6PT2 1 JRNL REVDAT 1 11-DEC-19 6PT2 0 JRNL AUTH T.CLAFF,J.YU,V.BLAIS,N.PATEL,C.MARTIN,L.WU,G.W.HAN, JRNL AUTH 2 B.J.HOLLERAN,O.VAN DER POORTEN,K.L.WHITE,M.A.HANSON, JRNL AUTH 3 P.SARRET,L.GENDRON,V.CHEREZOV,V.KATRITCH,S.BALLET,Z.J.LIU, JRNL AUTH 4 C.E.MULLER,R.C.STEVENS JRNL TITL ELUCIDATING THE ACTIVE DELTA-OPIOID RECEPTOR CRYSTAL JRNL TITL 2 STRUCTURE WITH PEPTIDE AND SMALL-MOLECULE AGONISTS. JRNL REF SCI ADV V. 5 X9115 2019 JRNL REFN ESSN 2375-2548 JRNL PMID 31807708 JRNL DOI 10.1126/SCIADV.AAX9115 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 26050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2461 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2421 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2342 REMARK 3 BIN R VALUE (WORKING SET) : 0.2397 REMARK 3 BIN FREE R VALUE : 0.2913 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.84 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 115.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.36440 REMARK 3 B22 (A**2) : 19.41710 REMARK 3 B33 (A**2) : -0.05270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.470 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.117 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.378 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.166 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.385 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6086 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8290 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2014 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 970 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6086 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 844 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7169 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|999 - A|1106 A|41 - A|329 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.4415 36.1495 -30.5762 REMARK 3 T TENSOR REMARK 3 T11: 0.0571 T22: -0.2990 REMARK 3 T33: -0.3257 T12: 0.0253 REMARK 3 T13: 0.0029 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 0.8351 L22: 0.7218 REMARK 3 L33: 2.6074 L12: 0.1331 REMARK 3 L13: -0.1896 L23: -0.1726 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: -0.0003 S13: 0.0388 REMARK 3 S21: -0.2132 S22: 0.0044 S23: -0.0211 REMARK 3 S31: 0.0913 S32: 0.1446 S33: 0.1258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1002 - B|1104 B|1107 - B|1399 } REMARK 3 ORIGIN FOR THE GROUP (A): -22.6141 6.4206 -40.0551 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: -0.3174 REMARK 3 T33: -0.3269 T12: 0.0277 REMARK 3 T13: 0.0381 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.5187 L22: 1.6784 REMARK 3 L33: 2.0434 L12: 0.0022 REMARK 3 L13: 0.3393 L23: -0.4139 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: -0.0552 S13: -0.0197 REMARK 3 S21: -0.0467 S22: 0.1469 S23: -0.2479 REMARK 3 S31: -0.2212 S32: -0.0348 S33: 0.0410 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE SOME UNKNOWN DENSITIES REMARK 3 LOCATED NEAR THE TWO FOLD OF THE MOLECULE CLOSE TO THE SIDE REMARK 3 CHAIN OF 152 HIS OF BOTH A AND B CHAINS. THEY HAVE NOT BEEN REMARK 3 MODELLED. REMARK 4 REMARK 4 6PT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27-32% PEG400, 100-120 MM POTASSIUM REMARK 280 CITRATE TRIBASIC MONOHYDRATE AND 100 MM MES PH 6.0, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.32000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.32000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 951 REMARK 465 LYS A 952 REMARK 465 THR A 953 REMARK 465 ILE A 954 REMARK 465 ILE A 955 REMARK 465 ALA A 956 REMARK 465 LEU A 957 REMARK 465 SER A 958 REMARK 465 TYR A 959 REMARK 465 ILE A 960 REMARK 465 PHE A 961 REMARK 465 CYS A 962 REMARK 465 LEU A 963 REMARK 465 VAL A 964 REMARK 465 PHE A 965 REMARK 465 ALA A 966 REMARK 465 ASP A 967 REMARK 465 TYR A 968 REMARK 465 LYS A 969 REMARK 465 ASP A 970 REMARK 465 ASP A 971 REMARK 465 ASP A 972 REMARK 465 ASP A 973 REMARK 465 ALA A 974 REMARK 465 LYS A 975 REMARK 465 LEU A 976 REMARK 465 GLN A 977 REMARK 465 THR A 978 REMARK 465 MET A 979 REMARK 465 HIS A 980 REMARK 465 HIS A 981 REMARK 465 HIS A 982 REMARK 465 HIS A 983 REMARK 465 HIS A 984 REMARK 465 HIS A 985 REMARK 465 HIS A 986 REMARK 465 HIS A 987 REMARK 465 HIS A 988 REMARK 465 HIS A 989 REMARK 465 GLU A 990 REMARK 465 ASN A 991 REMARK 465 LEU A 992 REMARK 465 TYR A 993 REMARK 465 PHE A 994 REMARK 465 GLN A 995 REMARK 465 GLY A 996 REMARK 465 GLY A 997 REMARK 465 THR A 998 REMARK 465 ARG A 330 REMARK 465 GLN A 331 REMARK 465 LEU A 332 REMARK 465 CYS A 333 REMARK 465 ARG A 334 REMARK 465 LYS A 335 REMARK 465 PRO A 336 REMARK 465 CYS A 337 REMARK 465 GLY A 338 REMARK 465 MET B 951 REMARK 465 LYS B 952 REMARK 465 THR B 953 REMARK 465 ILE B 954 REMARK 465 ILE B 955 REMARK 465 ALA B 956 REMARK 465 LEU B 957 REMARK 465 SER B 958 REMARK 465 TYR B 959 REMARK 465 ILE B 960 REMARK 465 PHE B 961 REMARK 465 CYS B 962 REMARK 465 LEU B 963 REMARK 465 VAL B 964 REMARK 465 PHE B 965 REMARK 465 ALA B 966 REMARK 465 ASP B 967 REMARK 465 TYR B 968 REMARK 465 LYS B 969 REMARK 465 ASP B 970 REMARK 465 ASP B 971 REMARK 465 ASP B 972 REMARK 465 ASP B 973 REMARK 465 ALA B 974 REMARK 465 LYS B 975 REMARK 465 LEU B 976 REMARK 465 GLN B 977 REMARK 465 THR B 978 REMARK 465 MET B 979 REMARK 465 HIS B 980 REMARK 465 HIS B 981 REMARK 465 HIS B 982 REMARK 465 HIS B 983 REMARK 465 HIS B 984 REMARK 465 HIS B 985 REMARK 465 HIS B 986 REMARK 465 HIS B 987 REMARK 465 HIS B 988 REMARK 465 HIS B 989 REMARK 465 GLU B 990 REMARK 465 ASN B 991 REMARK 465 LEU B 992 REMARK 465 TYR B 993 REMARK 465 PHE B 994 REMARK 465 GLN B 995 REMARK 465 GLY B 996 REMARK 465 GLY B 997 REMARK 465 THR B 998 REMARK 465 THR B 999 REMARK 465 MET B 1000 REMARK 465 ALA B 1001 REMARK 465 LYS B 1019 REMARK 465 ALA B 1020 REMARK 465 ASP B 1021 REMARK 465 ASN B 1022 REMARK 465 ALA B 1043 REMARK 465 THR B 1044 REMARK 465 PRO B 1045 REMARK 465 PRO B 1046 REMARK 465 LYS B 1047 REMARK 465 LEU B 1048 REMARK 465 GLU B 1049 REMARK 465 ASP B 1050 REMARK 465 LYS B 1051 REMARK 465 SER B 1052 REMARK 465 PRO B 1053 REMARK 465 ASP B 1054 REMARK 465 SER B 1055 REMARK 465 PRO B 1056 REMARK 465 GLU B 1057 REMARK 465 ALA B 1079 REMARK 465 ASN B 1080 REMARK 465 GLU B 1081 REMARK 465 GLY B 1082 REMARK 465 LYS B 1083 REMARK 465 VAL B 1084 REMARK 465 LYS B 1085 REMARK 465 GLU B 1086 REMARK 465 ALA B 1087 REMARK 465 GLN B 1088 REMARK 465 ALA B 1089 REMARK 465 TYR B 1105 REMARK 465 LEU B 1106 REMARK 465 LEU B 245 REMARK 465 LEU B 246 REMARK 465 SER B 247 REMARK 465 GLY B 248 REMARK 465 SER B 249 REMARK 465 ARG B 334 REMARK 465 LYS B 335 REMARK 465 PRO B 336 REMARK 465 CYS B 337 REMARK 465 GLY B 338 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1008 CG CD OE1 OE2 REMARK 470 LYS A1015 CG CD CE NZ REMARK 470 GLU A1049 CG CD OE1 OE2 REMARK 470 LYS A1059 CG CD CE NZ REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ASP A 253 CG OD1 OD2 REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1002 CG OD1 OD2 REMARK 470 LEU B1003 CG CD1 CD2 REMARK 470 GLU B1004 CG CD OE1 OE2 REMARK 470 GLU B1008 CG CD OE1 OE2 REMARK 470 ASP B1012 CG OD1 OD2 REMARK 470 LYS B1015 CG CD CE NZ REMARK 470 ILE B1017 CG1 CG2 CD1 REMARK 470 GLU B1018 CG CD OE1 OE2 REMARK 470 LYS B1027 CG CD CE NZ REMARK 470 LYS B1032 CG CD CE NZ REMARK 470 ARG B1034 CG CD NE CZ NH1 NH2 REMARK 470 LEU B1038 CG CD1 CD2 REMARK 470 MET B1058 CG SD CE REMARK 470 LYS B1059 CG CD CE NZ REMARK 470 ARG B1062 CG CD NE CZ NH1 NH2 REMARK 470 PHE B1065 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B1066 CG OD1 OD2 REMARK 470 LEU B1068 CG CD1 CD2 REMARK 470 GLN B1071 CG CD OE1 NE2 REMARK 470 LYS B1077 CG CD CE NZ REMARK 470 LEU B1078 CG CD1 CD2 REMARK 470 GLU B1092 CG CD OE1 OE2 REMARK 470 GLN B1093 CG CD OE1 NE2 REMARK 470 LEU B1094 CG CD1 CD2 REMARK 470 LYS B1095 CG CD CE NZ REMARK 470 ARG B1098 CG CD NE CZ NH1 NH2 REMARK 470 ASN B1099 CG OD1 ND2 REMARK 470 TYR B1101 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B1102 CG1 CG2 CD1 REMARK 470 GLN B1103 CG CD OE1 NE2 REMARK 470 LYS B1104 CG CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 261 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 291 CD NE CZ NH1 NH2 REMARK 470 ARG B 292 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1106 58.25 -116.52 REMARK 500 TYR A 77 -64.98 -122.27 REMARK 500 MET A 80 74.17 -67.35 REMARK 500 ARG A 160 40.55 -73.24 REMARK 500 PHE A 222 -60.19 -125.59 REMARK 500 ASP A 290 87.84 -68.14 REMARK 500 TYR B1101 -22.50 -141.53 REMARK 500 SER B 42 -72.72 -56.28 REMARK 500 TYR B 77 -61.02 -95.23 REMARK 500 MET B 80 43.99 34.38 REMARK 500 HIS B 152 75.97 -119.16 REMARK 500 ARG B 160 42.31 -75.42 REMARK 500 PHE B 222 -66.62 -131.04 REMARK 500 ASP B 293 124.63 -37.58 REMARK 500 LEU B 313 51.78 -114.65 REMARK 500 DAR C 2 -22.64 154.84 REMARK 500 DAR D 2 -16.54 141.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA B 1201 REMARK 610 OLA B 1202 REMARK 610 OLA B 1203 REMARK 610 OLA B 1204 REMARK 610 OLA B 1205 REMARK 610 OLC B 1206 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA B 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA B 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1206 DBREF 6PT2 A 951 338 PDB 6PT2 6PT2 951 338 DBREF 6PT2 B 951 338 PDB 6PT2 6PT2 951 338 DBREF 6PT2 C 1 5 PDB 6PT2 6PT2 1 5 DBREF 6PT2 D 1 5 PDB 6PT2 6PT2 1 5 SEQRES 1 A 454 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 A 454 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP ALA LYS LEU SEQRES 3 A 454 GLN THR MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 4 A 454 GLU ASN LEU TYR PHE GLN GLY GLY THR THR MET ALA ASP SEQRES 5 A 454 LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS SEQRES 6 A 454 VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP SEQRES 7 A 454 ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN SEQRES 8 A 454 LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SEQRES 9 A 454 SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE SEQRES 10 A 454 LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN SEQRES 11 A 454 GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN SEQRES 12 A 454 LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU SEQRES 13 A 454 ARG SER ALA SER SER LEU ALA LEU ALA ILE ALA ILE THR SEQRES 14 A 454 ALA LEU TYR SER ALA VAL CYS ALA VAL GLY LEU LEU GLY SEQRES 15 A 454 ASN VAL LEU VAL MET PHE VAL ILE VAL ARG TYR THR LYS SEQRES 16 A 454 MET LYS THR ALA THR ASN ILE TYR ILE PHE SER LEU ALA SEQRES 17 A 454 LEU ALA GLY ALA LEU ALA THR SER THR LEU PRO PHE GLN SEQRES 18 A 454 SER ALA ASP TYR LEU MET GLU THR TRP PRO PHE GLY GLU SEQRES 19 A 454 LEU LEU CYS LYS ALA VAL LEU SER ILE ASP TYR TYR SER SEQRES 20 A 454 MET PHE THR SER ILE PHE THR LEU THR MET MET CYS VAL SEQRES 21 A 454 ASP ARG TYR ILE ALA VAL CYS HIS PRO VAL LYS ALA LEU SEQRES 22 A 454 ASP PHE ARG THR PRO ALA LYS ALA LYS LEU ILE ASN ILE SEQRES 23 A 454 CYS ILE TRP VAL LEU ALA SER GLY VAL GLY VAL PRO ILE SEQRES 24 A 454 MET VAL MET ALA VAL THR ARG PRO ARG ASP GLY ALA VAL SEQRES 25 A 454 VAL CYS MET LEU GLN PHE PRO SER PRO SER TRP TYR TRP SEQRES 26 A 454 ASP THR VAL THR LYS ILE CYS VAL PHE LEU PHE ALA PHE SEQRES 27 A 454 VAL VAL PRO ILE LEU ILE ILE THR VAL CYS TYR GLY LEU SEQRES 28 A 454 MET LEU LEU ARG LEU ARG SER VAL ARG LEU LEU SER GLY SEQRES 29 A 454 SER LYS GLU LYS ASP ARG SER LEU ARG ARG ILE THR ARG SEQRES 30 A 454 MET VAL LEU VAL VAL VAL VAL ALA PHE VAL VAL CYS TRP SEQRES 31 A 454 ALA PRO ILE HIS ILE PHE VAL ILE VAL TRP THR LEU VAL SEQRES 32 A 454 ASP ILE ASP ARG ARG ASP PRO LEU VAL VAL ALA ALA LEU SEQRES 33 A 454 HIS LEU CYS ILE ALA LEU GLY TYR ILE ASN SER SER LEU SEQRES 34 A 454 ASN PRO VAL LEU TYR ALA PHE LEU ASP LYS ASN PHE LYS SEQRES 35 A 454 ARG CYS PHE ARG GLN LEU CYS ARG LYS PRO CYS GLY SEQRES 1 B 454 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 B 454 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP ALA LYS LEU SEQRES 3 B 454 GLN THR MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 4 B 454 GLU ASN LEU TYR PHE GLN GLY GLY THR THR MET ALA ASP SEQRES 5 B 454 LEU GLU ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS SEQRES 6 B 454 VAL ILE GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP SEQRES 7 B 454 ALA LEU THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN SEQRES 8 B 454 LYS ALA THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SEQRES 9 B 454 SER PRO GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE SEQRES 10 B 454 LEU VAL GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN SEQRES 11 B 454 GLU GLY LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN SEQRES 12 B 454 LEU LYS THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU SEQRES 13 B 454 ARG SER ALA SER SER LEU ALA LEU ALA ILE ALA ILE THR SEQRES 14 B 454 ALA LEU TYR SER ALA VAL CYS ALA VAL GLY LEU LEU GLY SEQRES 15 B 454 ASN VAL LEU VAL MET PHE VAL ILE VAL ARG TYR THR LYS SEQRES 16 B 454 MET LYS THR ALA THR ASN ILE TYR ILE PHE SER LEU ALA SEQRES 17 B 454 LEU ALA GLY ALA LEU ALA THR SER THR LEU PRO PHE GLN SEQRES 18 B 454 SER ALA ASP TYR LEU MET GLU THR TRP PRO PHE GLY GLU SEQRES 19 B 454 LEU LEU CYS LYS ALA VAL LEU SER ILE ASP TYR TYR SER SEQRES 20 B 454 MET PHE THR SER ILE PHE THR LEU THR MET MET CYS VAL SEQRES 21 B 454 ASP ARG TYR ILE ALA VAL CYS HIS PRO VAL LYS ALA LEU SEQRES 22 B 454 ASP PHE ARG THR PRO ALA LYS ALA LYS LEU ILE ASN ILE SEQRES 23 B 454 CYS ILE TRP VAL LEU ALA SER GLY VAL GLY VAL PRO ILE SEQRES 24 B 454 MET VAL MET ALA VAL THR ARG PRO ARG ASP GLY ALA VAL SEQRES 25 B 454 VAL CYS MET LEU GLN PHE PRO SER PRO SER TRP TYR TRP SEQRES 26 B 454 ASP THR VAL THR LYS ILE CYS VAL PHE LEU PHE ALA PHE SEQRES 27 B 454 VAL VAL PRO ILE LEU ILE ILE THR VAL CYS TYR GLY LEU SEQRES 28 B 454 MET LEU LEU ARG LEU ARG SER VAL ARG LEU LEU SER GLY SEQRES 29 B 454 SER LYS GLU LYS ASP ARG SER LEU ARG ARG ILE THR ARG SEQRES 30 B 454 MET VAL LEU VAL VAL VAL VAL ALA PHE VAL VAL CYS TRP SEQRES 31 B 454 ALA PRO ILE HIS ILE PHE VAL ILE VAL TRP THR LEU VAL SEQRES 32 B 454 ASP ILE ASP ARG ARG ASP PRO LEU VAL VAL ALA ALA LEU SEQRES 33 B 454 HIS LEU CYS ILE ALA LEU GLY TYR ILE ASN SER SER LEU SEQRES 34 B 454 ASN PRO VAL LEU TYR ALA PHE LEU ASP LYS ASN PHE LYS SEQRES 35 B 454 ARG CYS PHE ARG GLN LEU CYS ARG LYS PRO CYS GLY SEQRES 1 C 5 DI7 DAR PHE SAR OXJ SEQRES 1 D 5 DI7 DAR PHE SAR OXJ HET DI7 C 1 14 HET DAR C 2 11 HET SAR C 4 5 HET OXJ C 5 17 HET DI7 D 1 14 HET DAR D 2 11 HET SAR D 4 5 HET OXJ D 5 17 HET CLR A1201 28 HET OLA A1202 20 HET OLA A1203 20 HET OLA B1201 13 HET OLA B1202 9 HET OLA B1203 9 HET OLA B1204 9 HET OLA B1205 9 HET OLC B1206 19 HETNAM DI7 2,6-DIMETHYL-L-TYROSINE HETNAM DAR D-ARGININE HETNAM SAR SARCOSINE HETNAM OXJ 1-[3,5-BIS(TRIFLUOROMETHYL)PHENYL]-N-METHYLMETHANAMINE HETNAM CLR CHOLESTEROL HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 DI7 2(C11 H15 N O3) FORMUL 3 DAR 2(C6 H15 N4 O2 1+) FORMUL 3 SAR 2(C3 H7 N O2) FORMUL 3 OXJ 2(C10 H9 F6 N) FORMUL 5 CLR C27 H46 O FORMUL 6 OLA 7(C18 H34 O2) FORMUL 13 OLC C21 H40 O4 FORMUL 14 HOH *3(H2 O) HELIX 1 AA1 THR A 999 LYS A 1019 1 21 HELIX 2 AA2 ASN A 1022 GLN A 1041 1 20 HELIX 3 AA3 SER A 1055 GLY A 1082 1 28 HELIX 4 AA4 LYS A 1085 ALA A 1090 1 6 HELIX 5 AA5 ALA A 1091 TYR A 1101 1 11 HELIX 6 AA6 ILE A 1102 LEU A 1106 5 5 HELIX 7 AA7 SER A 45 TYR A 77 1 33 HELIX 8 AA8 THR A 82 SER A 100 1 19 HELIX 9 AA9 THR A 101 GLU A 112 1 12 HELIX 10 AB1 GLY A 117 HIS A 152 1 36 HELIX 11 AB2 LYS A 155 ARG A 160 1 6 HELIX 12 AB3 THR A 161 ALA A 176 1 16 HELIX 13 AB4 ALA A 176 MET A 186 1 11 HELIX 14 AB5 PRO A 205 PHE A 222 1 18 HELIX 15 AB6 PHE A 222 SER A 247 1 26 HELIX 16 AB7 ASP A 253 VAL A 287 1 35 HELIX 17 AB8 ASP A 293 ASP A 322 1 30 HELIX 18 AB9 ASP A 322 PHE A 329 1 8 HELIX 19 AC1 LEU B 1003 GLU B 1018 1 16 HELIX 20 AC2 ALA B 1024 LYS B 1042 1 19 HELIX 21 AC3 LYS B 1059 LEU B 1078 1 20 HELIX 22 AC4 GLU B 1092 ARG B 1098 1 7 HELIX 23 AC5 ASN B 1099 TYR B 1101 5 3 HELIX 24 AC6 SER B 42 TYR B 77 1 36 HELIX 25 AC7 THR B 82 SER B 100 1 19 HELIX 26 AC8 THR B 101 GLU B 112 1 12 HELIX 27 AC9 PHE B 116 HIS B 152 1 37 HELIX 28 AD1 HIS B 152 ARG B 160 1 9 HELIX 29 AD2 THR B 161 ALA B 176 1 16 HELIX 30 AD3 ALA B 176 MET B 186 1 11 HELIX 31 AD4 PRO B 205 ALA B 221 1 17 HELIX 32 AD5 PHE B 222 SER B 242 1 21 HELIX 33 AD6 GLU B 251 VAL B 287 1 37 HELIX 34 AD7 ASP B 293 LEU B 313 1 21 HELIX 35 AD8 ASN B 314 PHE B 325 1 12 HELIX 36 AD9 PHE B 325 PHE B 329 1 5 SHEET 1 AA1 2 SER A 42 SER A 44 0 SHEET 2 AA1 2 ARG B 330 LEU B 332 -1 O GLN B 331 N ALA A 43 SHEET 1 AA2 2 ALA A 187 ARG A 192 0 SHEET 2 AA2 2 ALA A 195 LEU A 200 -1 O MET A 199 N VAL A 188 SHEET 1 AA3 2 ALA B 187 ARG B 192 0 SHEET 2 AA3 2 ALA B 195 LEU B 200 -1 O MET B 199 N VAL B 188 SSBOND 1 CYS A 121 CYS A 198 1555 1555 2.05 SSBOND 2 CYS B 121 CYS B 198 1555 1555 2.04 LINK C DI7 C 1 N DAR C 2 1555 1555 1.34 LINK C DAR C 2 N PHE C 3 1555 1555 1.32 LINK C PHE C 3 N SAR C 4 1555 1555 1.36 LINK C SAR C 4 NBO OXJ C 5 1555 1555 1.35 LINK C DI7 D 1 N DAR D 2 1555 1555 1.33 LINK C DAR D 2 N PHE D 3 1555 1555 1.33 LINK C PHE D 3 N SAR D 4 1555 1555 1.36 LINK C SAR D 4 NBO OXJ D 5 1555 1555 1.34 CISPEP 1 SER A 204 PRO A 205 0 -5.19 CISPEP 2 SER B 204 PRO B 205 0 -1.01 CISPEP 3 PHE C 3 SAR C 4 0 -4.90 CISPEP 4 PHE D 3 SAR D 4 0 -1.20 SITE 1 AC1 4 PRO A 276 ILE A 279 VAL A 283 ILE A 289 SITE 1 AC2 5 SER A 106 ALA A 107 LEU A 110 MET A 111 SITE 2 AC2 5 PHE B 325 SITE 1 AC3 1 TRP A 173 SITE 1 AC4 2 TYR B 318 ASP B 322 SITE 1 AC5 1 TRP B 173 SITE 1 AC6 3 SER A 204 THR B 285 LEU B 286 SITE 1 AC7 3 LYS B 122 MET B 184 VAL B 185 SITE 1 AC8 2 ILE B 289 VAL B 296 CRYST1 48.960 140.880 158.640 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006304 0.00000