data_6PUP # _entry.id 6PUP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6PUP pdb_00006pup 10.2210/pdb6pup/pdb WWPDB D_1000243095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-29 2 'Structure model' 1 1 2022-06-22 3 'Structure model' 1 2 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 2 'Structure model' struct 5 3 'Structure model' chem_comp_atom 6 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_volume' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 2 'Structure model' '_citation_author.identifier_ORCID' 9 2 'Structure model' '_citation_author.name' 10 2 'Structure model' '_database_2.pdbx_DOI' 11 2 'Structure model' '_database_2.pdbx_database_accession' 12 2 'Structure model' '_struct.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6PUP _pdbx_database_status.recvd_initial_deposition_date 2019-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sjekloca, L.' 1 0000-0002-4508-1743 ;Ferre D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'MicroPubl Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2022 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.17912/micropub.biology.000570 _citation.pdbx_database_id_PubMed 35693892 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sjekloca, L.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Wybutosine biosynthesis protein Tyw1' 19750.379 1 ? ? 'Flavodoxin-like domain, residues 76-251' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 3 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 4 water nat water 18.015 46 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSRKLTDISACSINIFYSTLGGSTQKFAEHVADRIRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSI DYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGDFEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEA MEAWTDLFLQYAKEKA ; _entity_poly.pdbx_seq_one_letter_code_can ;SSRKLTDISACSINIFYSTLGGSTQKFAEHVADRIRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSI DYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGDFEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEA MEAWTDLFLQYAKEKA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'FLAVIN MONONUCLEOTIDE' FMN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 ARG n 1 4 LYS n 1 5 LEU n 1 6 THR n 1 7 ASP n 1 8 ILE n 1 9 SER n 1 10 ALA n 1 11 CYS n 1 12 SER n 1 13 ILE n 1 14 ASN n 1 15 ILE n 1 16 PHE n 1 17 TYR n 1 18 SER n 1 19 THR n 1 20 LEU n 1 21 GLY n 1 22 GLY n 1 23 SER n 1 24 THR n 1 25 GLN n 1 26 LYS n 1 27 PHE n 1 28 ALA n 1 29 GLU n 1 30 HIS n 1 31 VAL n 1 32 ALA n 1 33 ASP n 1 34 ARG n 1 35 ILE n 1 36 ARG n 1 37 SER n 1 38 SER n 1 39 LEU n 1 40 GLN n 1 41 THR n 1 42 GLU n 1 43 LEU n 1 44 VAL n 1 45 GLU n 1 46 ILE n 1 47 LEU n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 TYR n 1 52 ILE n 1 53 ASP n 1 54 LEU n 1 55 ASP n 1 56 GLU n 1 57 TYR n 1 58 PHE n 1 59 SER n 1 60 LYS n 1 61 GLY n 1 62 ASN n 1 63 SER n 1 64 ASN n 1 65 THR n 1 66 VAL n 1 67 TYR n 1 68 LEU n 1 69 VAL n 1 70 LEU n 1 71 LEU n 1 72 PRO n 1 73 SER n 1 74 TYR n 1 75 ALA n 1 76 ILE n 1 77 GLU n 1 78 SER n 1 79 SER n 1 80 ILE n 1 81 ASP n 1 82 TYR n 1 83 PHE n 1 84 LEU n 1 85 SER n 1 86 ALA n 1 87 LEU n 1 88 GLN n 1 89 THR n 1 90 THR n 1 91 ILE n 1 92 ASP n 1 93 ASP n 1 94 PHE n 1 95 ARG n 1 96 ILE n 1 97 VAL n 1 98 ALA n 1 99 ARG n 1 100 PRO n 1 101 LEU n 1 102 GLU n 1 103 LYS n 1 104 LEU n 1 105 ARG n 1 106 GLY n 1 107 PHE n 1 108 ALA n 1 109 VAL n 1 110 LEU n 1 111 GLY n 1 112 PHE n 1 113 GLY n 1 114 ASP n 1 115 PHE n 1 116 GLU n 1 117 GLN n 1 118 TYR n 1 119 ALA n 1 120 GLY n 1 121 ASP n 1 122 LEU n 1 123 PHE n 1 124 CYS n 1 125 TYR n 1 126 GLN n 1 127 ALA n 1 128 ILE n 1 129 ALA n 1 130 ALA n 1 131 ASP n 1 132 GLN n 1 133 ARG n 1 134 LEU n 1 135 ALA n 1 136 LYS n 1 137 LEU n 1 138 GLY n 1 139 ALA n 1 140 GLN n 1 141 ARG n 1 142 ILE n 1 143 ALA n 1 144 PRO n 1 145 LEU n 1 146 GLY n 1 147 VAL n 1 148 VAL n 1 149 ASN n 1 150 VAL n 1 151 LYS n 1 152 LEU n 1 153 GLU n 1 154 LYS n 1 155 ALA n 1 156 GLN n 1 157 VAL n 1 158 TYR n 1 159 GLU n 1 160 ALA n 1 161 MET n 1 162 GLU n 1 163 ALA n 1 164 TRP n 1 165 THR n 1 166 ASP n 1 167 LEU n 1 168 PHE n 1 169 LEU n 1 170 GLN n 1 171 TYR n 1 172 ALA n 1 173 LYS n 1 174 GLU n 1 175 LYS n 1 176 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 176 _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SJAG_04265 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'yFS275 / FY16936' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces japonicus (strain yFS275 / FY16936)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 402676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 76 ? ? ? A . n A 1 2 SER 2 77 ? ? ? A . n A 1 3 ARG 3 78 ? ? ? A . n A 1 4 LYS 4 79 ? ? ? A . n A 1 5 LEU 5 80 ? ? ? A . n A 1 6 THR 6 81 81 THR THR A . n A 1 7 ASP 7 82 82 ASP ASP A . n A 1 8 ILE 8 83 83 ILE ILE A . n A 1 9 SER 9 84 84 SER SER A . n A 1 10 ALA 10 85 85 ALA ALA A . n A 1 11 CYS 11 86 86 CYS CYS A . n A 1 12 SER 12 87 87 SER SER A . n A 1 13 ILE 13 88 88 ILE ILE A . n A 1 14 ASN 14 89 89 ASN ASN A . n A 1 15 ILE 15 90 90 ILE ILE A . n A 1 16 PHE 16 91 91 PHE PHE A . n A 1 17 TYR 17 92 92 TYR TYR A . n A 1 18 SER 18 93 93 SER SER A . n A 1 19 THR 19 94 94 THR THR A . n A 1 20 LEU 20 95 95 LEU LEU A . n A 1 21 GLY 21 96 96 GLY GLY A . n A 1 22 GLY 22 97 97 GLY GLY A . n A 1 23 SER 23 98 98 SER SER A . n A 1 24 THR 24 99 99 THR THR A . n A 1 25 GLN 25 100 100 GLN GLN A . n A 1 26 LYS 26 101 101 LYS LYS A . n A 1 27 PHE 27 102 102 PHE PHE A . n A 1 28 ALA 28 103 103 ALA ALA A . n A 1 29 GLU 29 104 104 GLU GLU A . n A 1 30 HIS 30 105 105 HIS HIS A . n A 1 31 VAL 31 106 106 VAL VAL A . n A 1 32 ALA 32 107 107 ALA ALA A . n A 1 33 ASP 33 108 108 ASP ASP A . n A 1 34 ARG 34 109 109 ARG ARG A . n A 1 35 ILE 35 110 110 ILE ILE A . n A 1 36 ARG 36 111 111 ARG ARG A . n A 1 37 SER 37 112 112 SER SER A . n A 1 38 SER 38 113 113 SER SER A . n A 1 39 LEU 39 114 114 LEU LEU A . n A 1 40 GLN 40 115 115 GLN GLN A . n A 1 41 THR 41 116 116 THR THR A . n A 1 42 GLU 42 117 117 GLU GLU A . n A 1 43 LEU 43 118 118 LEU LEU A . n A 1 44 VAL 44 119 119 VAL VAL A . n A 1 45 GLU 45 120 120 GLU GLU A . n A 1 46 ILE 46 121 121 ILE ILE A . n A 1 47 LEU 47 122 122 LEU LEU A . n A 1 48 ASN 48 123 123 ASN ASN A . n A 1 49 LEU 49 124 124 LEU LEU A . n A 1 50 ASP 50 125 125 ASP ASP A . n A 1 51 TYR 51 126 126 TYR TYR A . n A 1 52 ILE 52 127 127 ILE ILE A . n A 1 53 ASP 53 128 128 ASP ASP A . n A 1 54 LEU 54 129 129 LEU LEU A . n A 1 55 ASP 55 130 130 ASP ASP A . n A 1 56 GLU 56 131 131 GLU GLU A . n A 1 57 TYR 57 132 132 TYR TYR A . n A 1 58 PHE 58 133 133 PHE PHE A . n A 1 59 SER 59 134 134 SER SER A . n A 1 60 LYS 60 135 135 LYS LYS A . n A 1 61 GLY 61 136 136 GLY GLY A . n A 1 62 ASN 62 137 137 ASN ASN A . n A 1 63 SER 63 138 138 SER SER A . n A 1 64 ASN 64 139 139 ASN ASN A . n A 1 65 THR 65 140 140 THR THR A . n A 1 66 VAL 66 141 141 VAL VAL A . n A 1 67 TYR 67 142 142 TYR TYR A . n A 1 68 LEU 68 143 143 LEU LEU A . n A 1 69 VAL 69 144 144 VAL VAL A . n A 1 70 LEU 70 145 145 LEU LEU A . n A 1 71 LEU 71 146 146 LEU LEU A . n A 1 72 PRO 72 147 147 PRO PRO A . n A 1 73 SER 73 148 148 SER SER A . n A 1 74 TYR 74 149 149 TYR TYR A . n A 1 75 ALA 75 150 150 ALA ALA A . n A 1 76 ILE 76 151 151 ILE ILE A . n A 1 77 GLU 77 152 152 GLU GLU A . n A 1 78 SER 78 153 153 SER SER A . n A 1 79 SER 79 154 154 SER SER A . n A 1 80 ILE 80 155 155 ILE ILE A . n A 1 81 ASP 81 156 156 ASP ASP A . n A 1 82 TYR 82 157 157 TYR TYR A . n A 1 83 PHE 83 158 158 PHE PHE A . n A 1 84 LEU 84 159 159 LEU LEU A . n A 1 85 SER 85 160 160 SER SER A . n A 1 86 ALA 86 161 161 ALA ALA A . n A 1 87 LEU 87 162 162 LEU LEU A . n A 1 88 GLN 88 163 163 GLN GLN A . n A 1 89 THR 89 164 164 THR THR A . n A 1 90 THR 90 165 165 THR THR A . n A 1 91 ILE 91 166 166 ILE ILE A . n A 1 92 ASP 92 167 167 ASP ASP A . n A 1 93 ASP 93 168 168 ASP ASP A . n A 1 94 PHE 94 169 169 PHE PHE A . n A 1 95 ARG 95 170 170 ARG ARG A . n A 1 96 ILE 96 171 171 ILE ILE A . n A 1 97 VAL 97 172 172 VAL VAL A . n A 1 98 ALA 98 173 173 ALA ALA A . n A 1 99 ARG 99 174 174 ARG ARG A . n A 1 100 PRO 100 175 175 PRO PRO A . n A 1 101 LEU 101 176 176 LEU LEU A . n A 1 102 GLU 102 177 177 GLU GLU A . n A 1 103 LYS 103 178 178 LYS LYS A . n A 1 104 LEU 104 179 179 LEU LEU A . n A 1 105 ARG 105 180 180 ARG ARG A . n A 1 106 GLY 106 181 181 GLY GLY A . n A 1 107 PHE 107 182 182 PHE PHE A . n A 1 108 ALA 108 183 183 ALA ALA A . n A 1 109 VAL 109 184 184 VAL VAL A . n A 1 110 LEU 110 185 185 LEU LEU A . n A 1 111 GLY 111 186 186 GLY GLY A . n A 1 112 PHE 112 187 187 PHE PHE A . n A 1 113 GLY 113 188 188 GLY GLY A . n A 1 114 ASP 114 189 189 ASP ASP A . n A 1 115 PHE 115 190 190 PHE PHE A . n A 1 116 GLU 116 191 191 GLU GLU A . n A 1 117 GLN 117 192 192 GLN GLN A . n A 1 118 TYR 118 193 193 TYR TYR A . n A 1 119 ALA 119 194 194 ALA ALA A . n A 1 120 GLY 120 195 195 GLY GLY A . n A 1 121 ASP 121 196 196 ASP ASP A . n A 1 122 LEU 122 197 197 LEU LEU A . n A 1 123 PHE 123 198 198 PHE PHE A . n A 1 124 CYS 124 199 199 CYS CYS A . n A 1 125 TYR 125 200 200 TYR TYR A . n A 1 126 GLN 126 201 201 GLN GLN A . n A 1 127 ALA 127 202 202 ALA ALA A . n A 1 128 ILE 128 203 203 ILE ILE A . n A 1 129 ALA 129 204 204 ALA ALA A . n A 1 130 ALA 130 205 205 ALA ALA A . n A 1 131 ASP 131 206 206 ASP ASP A . n A 1 132 GLN 132 207 207 GLN GLN A . n A 1 133 ARG 133 208 208 ARG ARG A . n A 1 134 LEU 134 209 209 LEU LEU A . n A 1 135 ALA 135 210 210 ALA ALA A . n A 1 136 LYS 136 211 211 LYS LYS A . n A 1 137 LEU 137 212 212 LEU LEU A . n A 1 138 GLY 138 213 213 GLY GLY A . n A 1 139 ALA 139 214 214 ALA ALA A . n A 1 140 GLN 140 215 215 GLN GLN A . n A 1 141 ARG 141 216 216 ARG ARG A . n A 1 142 ILE 142 217 217 ILE ILE A . n A 1 143 ALA 143 218 218 ALA ALA A . n A 1 144 PRO 144 219 219 PRO PRO A . n A 1 145 LEU 145 220 220 LEU LEU A . n A 1 146 GLY 146 221 221 GLY GLY A . n A 1 147 VAL 147 222 222 VAL VAL A . n A 1 148 VAL 148 223 223 VAL VAL A . n A 1 149 ASN 149 224 224 ASN ASN A . n A 1 150 VAL 150 225 225 VAL VAL A . n A 1 151 LYS 151 226 226 LYS LYS A . n A 1 152 LEU 152 227 227 LEU LEU A . n A 1 153 GLU 153 228 228 GLU GLU A . n A 1 154 LYS 154 229 229 LYS LYS A . n A 1 155 ALA 155 230 230 ALA ALA A . n A 1 156 GLN 156 231 231 GLN GLN A . n A 1 157 VAL 157 232 232 VAL VAL A . n A 1 158 TYR 158 233 233 TYR TYR A . n A 1 159 GLU 159 234 234 GLU GLU A . n A 1 160 ALA 160 235 235 ALA ALA A . n A 1 161 MET 161 236 236 MET MET A . n A 1 162 GLU 162 237 237 GLU GLU A . n A 1 163 ALA 163 238 238 ALA ALA A . n A 1 164 TRP 164 239 239 TRP TRP A . n A 1 165 THR 165 240 240 THR THR A . n A 1 166 ASP 166 241 241 ASP ASP A . n A 1 167 LEU 167 242 242 LEU LEU A . n A 1 168 PHE 168 243 243 PHE PHE A . n A 1 169 LEU 169 244 244 LEU LEU A . n A 1 170 GLN 170 245 245 GLN GLN A . n A 1 171 TYR 171 246 246 TYR TYR A . n A 1 172 ALA 172 247 247 ALA ALA A . n A 1 173 LYS 173 248 248 LYS LYS A . n A 1 174 GLU 174 249 249 GLU GLU A . n A 1 175 LYS 175 250 ? ? ? A . n A 1 176 ALA 176 251 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 301 1 MN MN A . C 2 MN 1 302 2 MN MN A . D 3 FMN 1 303 276 FMN FMN A . E 4 HOH 1 401 3 HOH HOH A . E 4 HOH 2 402 25 HOH HOH A . E 4 HOH 3 403 23 HOH HOH A . E 4 HOH 4 404 50 HOH HOH A . E 4 HOH 5 405 51 HOH HOH A . E 4 HOH 6 406 20 HOH HOH A . E 4 HOH 7 407 6 HOH HOH A . E 4 HOH 8 408 42 HOH HOH A . E 4 HOH 9 409 39 HOH HOH A . E 4 HOH 10 410 14 HOH HOH A . E 4 HOH 11 411 49 HOH HOH A . E 4 HOH 12 412 35 HOH HOH A . E 4 HOH 13 413 30 HOH HOH A . E 4 HOH 14 414 47 HOH HOH A . E 4 HOH 15 415 26 HOH HOH A . E 4 HOH 16 416 9 HOH HOH A . E 4 HOH 17 417 36 HOH HOH A . E 4 HOH 18 418 12 HOH HOH A . E 4 HOH 19 419 13 HOH HOH A . E 4 HOH 20 420 46 HOH HOH A . E 4 HOH 21 421 5 HOH HOH A . E 4 HOH 22 422 11 HOH HOH A . E 4 HOH 23 423 41 HOH HOH A . E 4 HOH 24 424 38 HOH HOH A . E 4 HOH 25 425 4 HOH HOH A . E 4 HOH 26 426 44 HOH HOH A . E 4 HOH 27 427 34 HOH HOH A . E 4 HOH 28 428 21 HOH HOH A . E 4 HOH 29 429 28 HOH HOH A . E 4 HOH 30 430 40 HOH HOH A . E 4 HOH 31 431 31 HOH HOH A . E 4 HOH 32 432 37 HOH HOH A . E 4 HOH 33 433 48 HOH HOH A . E 4 HOH 34 434 43 HOH HOH A . E 4 HOH 35 435 24 HOH HOH A . E 4 HOH 36 436 27 HOH HOH A . E 4 HOH 37 437 29 HOH HOH A . E 4 HOH 38 438 33 HOH HOH A . E 4 HOH 39 439 53 HOH HOH A . E 4 HOH 40 440 55 HOH HOH A . E 4 HOH 41 441 7 HOH HOH A . E 4 HOH 42 442 45 HOH HOH A . E 4 HOH 43 443 15 HOH HOH A . E 4 HOH 44 444 54 HOH HOH A . E 4 HOH 45 445 52 HOH HOH A . E 4 HOH 46 446 22 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.27 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 118.710 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6PUP _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.268 _cell.length_a_esd ? _cell.length_b 58.632 _cell.length_b_esd ? _cell.length_c 62.520 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6PUP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.46 _exptl_crystal.description 'yellow tetragonal crystals, 150 x 50 x 50 um3' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;100 mM Hepes-NaOH pH 7.5, 100 mM MOPS pH 7.5, 9.37% v/v MPD, 9.37% PEG1000, 9.37% w/v PEG 3350, 300 mM MgCl2 x 6 H20; 300 mM CaCl2 x 2 H20 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6PUP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.89 _reflns.d_resolution_low 54.83 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10359 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 77.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.000 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.126 _reflns.pdbx_Rpim_I_all 0.051 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.000 2.050 ? ? ? ? ? ? 274 28.500 ? ? ? ? 0.978 ? ? ? ? ? ? ? ? 3.600 ? ? ? ? 1.140 0.571 ? 1 1 0.476 ? 1.89 8.98 ? ? ? ? ? ? 162 99.300 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 6.000 ? ? ? ? 0.054 0.022 ? 2 1 0.999 ? # _refine.aniso_B[1][1] -1.9900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.4100 _refine.aniso_B[2][2] -0.7200 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 1.9800 _refine.B_iso_max 86.180 _refine.B_iso_mean 27.3570 _refine.B_iso_min 4.560 _refine.correlation_coeff_Fo_to_Fc 0.9600 _refine.correlation_coeff_Fo_to_Fc_free 0.9350 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6PUP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.8900 _refine.ls_d_res_low 54.8300 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9600 _refine.ls_number_reflns_R_free 1081 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 67.2900 _refine.ls_percent_reflns_R_free 10.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1754 _refine.ls_R_factor_R_free 0.2180 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1704 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.2300 _refine.pdbx_overall_ESU_R_Free 0.1880 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.1460 _refine.overall_SU_ML 0.1140 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.8900 _refine_hist.d_res_low 54.8300 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1418 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 169 _refine_hist.pdbx_B_iso_mean_ligand 17.44 _refine_hist.pdbx_B_iso_mean_solvent 33.22 _refine_hist.pdbx_number_atoms_protein 1339 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.013 1404 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 1282 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.551 1.667 1910 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.358 1.589 2964 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.428 5.000 170 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 32.885 23.151 73 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 14.858 15.000 230 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 17.022 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.074 0.200 184 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 0.020 1568 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 303 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.8910 _refine_ls_shell.d_res_low 1.9400 _refine_ls_shell.number_reflns_all 111 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.number_reflns_R_work 99 _refine_ls_shell.percent_reflns_obs 9.4900 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3590 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.3250 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6PUP _struct.title ;1.9 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6PUP _struct_keywords.text 'tRNA, hypermodification, wyosine, metal binding, FLAVOPROTEIN' _struct_keywords.pdbx_keywords FLAVOPROTEIN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B6K6D6_SCHJY _struct_ref.pdbx_db_accession B6K6D6 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSRKLTDISACSINIFYSTLGGSTQKFAEHVADRIRSSLQTELVEILNLDYIDLDEYFSKGNSNTVYLVLLPSYAIESSI DYFLSALQTTIDDFRIVARPLEKLRGFAVLGFGDFEQYAGDLFCYQAIAADQRLAKLGAQRIAPLGVVNVKLEKAQVYEA MEAWTDLFLQYAKEKA ; _struct_ref.pdbx_align_begin 76 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6PUP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 176 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B6K6D6 _struct_ref_seq.db_align_beg 76 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 251 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 76 _struct_ref_seq.pdbx_auth_seq_align_end 251 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 7 ? CYS A 11 ? ASP A 82 CYS A 86 5 ? 5 HELX_P HELX_P2 AA2 GLY A 22 ? GLN A 40 ? GLY A 97 GLN A 115 1 ? 19 HELX_P HELX_P3 AA3 ASP A 50 ? ILE A 52 ? ASP A 125 ILE A 127 5 ? 3 HELX_P HELX_P4 AA4 ASP A 53 ? SER A 59 ? ASP A 128 SER A 134 1 ? 7 HELX_P HELX_P5 AA5 SER A 78 ? ASP A 93 ? SER A 153 ASP A 168 1 ? 16 HELX_P HELX_P6 AA6 ASP A 114 ? ALA A 119 ? ASP A 189 ALA A 194 1 ? 6 HELX_P HELX_P7 AA7 CYS A 124 ? LEU A 137 ? CYS A 199 LEU A 212 1 ? 14 HELX_P HELX_P8 AA8 GLU A 153 ? GLU A 174 ? GLU A 228 GLU A 249 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 53 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 128 A MN 301 1_555 ? ? ? ? ? ? ? 2.295 ? ? metalc2 metalc ? ? A ASP 53 OD2 ? ? ? 1_555 C MN . MN ? ? A ASP 128 A MN 302 1_555 ? ? ? ? ? ? ? 2.589 ? ? metalc3 metalc ? ? A ASP 55 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 130 A MN 301 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc4 metalc ? ? A ASP 55 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 130 A MN 301 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc5 metalc ? ? A ASP 55 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 130 A MN 302 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc6 metalc ? ? A GLU 56 OE2 ? ? ? 1_555 C MN . MN ? ? A GLU 131 A MN 302 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc7 metalc ? ? B MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 301 A HOH 405 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc8 metalc ? ? B MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 301 A HOH 440 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc9 metalc ? ? B MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 301 A HOH 444 2_556 ? ? ? ? ? ? ? 2.746 ? ? metalc10 metalc ? ? B MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 301 A HOH 445 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 302 A HOH 405 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc12 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 302 A HOH 439 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc13 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 302 A HOH 440 1_555 ? ? ? ? ? ? ? 2.072 ? ? metalc14 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 302 A HOH 445 1_555 ? ? ? ? ? ? ? 2.705 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 74.7 ? 2 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 95.3 ? 3 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 50.9 ? 4 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 65.9 ? 5 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 98.8 ? 6 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 148.9 ? 7 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 132.0 ? 8 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 69.5 ? 9 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 86.2 ? 10 O ? E HOH . ? A HOH 405 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 89.0 ? 11 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 444 ? 2_556 134.4 ? 12 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 444 ? 2_556 148.0 ? 13 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 444 ? 2_556 122.8 ? 14 O ? E HOH . ? A HOH 405 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 444 ? 2_556 86.1 ? 15 O ? E HOH . ? A HOH 440 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 444 ? 2_556 79.1 ? 16 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 124.6 ? 17 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 112.8 ? 18 OD2 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 133.4 ? 19 O ? E HOH . ? A HOH 405 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 58.7 ? 20 O ? E HOH . ? A HOH 440 ? 1_555 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 50.2 ? 21 O ? E HOH . ? A HOH 444 ? 2_556 MN ? B MN . ? A MN 301 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 44.1 ? 22 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 80.9 ? 23 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 82.3 ? 24 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 99.1 ? 25 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 70.1 ? 26 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 147.6 ? 27 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 405 ? 1_555 63.5 ? 28 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 439 ? 1_555 145.5 ? 29 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 439 ? 1_555 127.6 ? 30 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 439 ? 1_555 74.9 ? 31 O ? E HOH . ? A HOH 405 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 439 ? 1_555 76.6 ? 32 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 142.8 ? 33 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 91.8 ? 34 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 134.9 ? 35 O ? E HOH . ? A HOH 405 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 120.1 ? 36 O ? E HOH . ? A HOH 439 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 440 ? 1_555 64.1 ? 37 OD2 ? A ASP 53 ? A ASP 128 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 116.1 ? 38 OD1 ? A ASP 55 ? A ASP 130 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 143.6 ? 39 OE2 ? A GLU 56 ? A GLU 131 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 114.3 ? 40 O ? E HOH . ? A HOH 405 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 66.0 ? 41 O ? E HOH . ? A HOH 439 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 54.6 ? 42 O ? E HOH . ? A HOH 440 ? 1_555 MN ? C MN . ? A MN 302 ? 1_555 O ? E HOH . ? A HOH 445 ? 1_555 54.6 ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 44 ? ASN A 48 ? VAL A 119 ASN A 123 AA1 2 SER A 12 ? TYR A 17 ? SER A 87 TYR A 92 AA1 3 THR A 65 ? PRO A 72 ? THR A 140 PRO A 147 AA1 4 GLY A 106 ? GLY A 113 ? GLY A 181 GLY A 188 AA1 5 GLY A 146 ? ASN A 149 ? GLY A 221 ASN A 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 45 ? O GLU A 120 N ILE A 15 ? N ILE A 90 AA1 2 3 N PHE A 16 ? N PHE A 91 O LEU A 70 ? O LEU A 145 AA1 3 4 N VAL A 69 ? N VAL A 144 O LEU A 110 ? O LEU A 185 AA1 4 5 N GLY A 111 ? N GLY A 186 O GLY A 146 ? O GLY A 221 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 301 ? 8 'binding site for residue MN A 301' AC2 Software A MN 302 ? 8 'binding site for residue MN A 302' AC3 Software A FMN 303 ? 22 'binding site for residue FMN A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASP A 53 ? ASP A 128 . ? 1_555 ? 2 AC1 8 ASP A 55 ? ASP A 130 . ? 1_555 ? 3 AC1 8 MN C . ? MN A 302 . ? 1_555 ? 4 AC1 8 HOH E . ? HOH A 401 . ? 1_555 ? 5 AC1 8 HOH E . ? HOH A 405 . ? 1_555 ? 6 AC1 8 HOH E . ? HOH A 440 . ? 1_555 ? 7 AC1 8 HOH E . ? HOH A 444 . ? 2_556 ? 8 AC1 8 HOH E . ? HOH A 445 . ? 1_555 ? 9 AC2 8 ASP A 53 ? ASP A 128 . ? 1_555 ? 10 AC2 8 ASP A 55 ? ASP A 130 . ? 1_555 ? 11 AC2 8 GLU A 56 ? GLU A 131 . ? 1_555 ? 12 AC2 8 MN B . ? MN A 301 . ? 1_555 ? 13 AC2 8 HOH E . ? HOH A 405 . ? 1_555 ? 14 AC2 8 HOH E . ? HOH A 439 . ? 1_555 ? 15 AC2 8 HOH E . ? HOH A 440 . ? 1_555 ? 16 AC2 8 HOH E . ? HOH A 445 . ? 1_555 ? 17 AC3 22 THR A 19 ? THR A 94 . ? 1_555 ? 18 AC3 22 LEU A 20 ? LEU A 95 . ? 1_555 ? 19 AC3 22 GLY A 21 ? GLY A 96 . ? 1_555 ? 20 AC3 22 GLY A 22 ? GLY A 97 . ? 1_555 ? 21 AC3 22 SER A 23 ? SER A 98 . ? 1_555 ? 22 AC3 22 THR A 24 ? THR A 99 . ? 1_555 ? 23 AC3 22 PRO A 72 ? PRO A 147 . ? 1_555 ? 24 AC3 22 SER A 73 ? SER A 148 . ? 1_555 ? 25 AC3 22 TYR A 74 ? TYR A 149 . ? 1_555 ? 26 AC3 22 ALA A 75 ? ALA A 150 . ? 1_555 ? 27 AC3 22 GLY A 113 ? GLY A 188 . ? 1_555 ? 28 AC3 22 ASP A 114 ? ASP A 189 . ? 1_555 ? 29 AC3 22 TYR A 118 ? TYR A 193 . ? 1_555 ? 30 AC3 22 LEU A 122 ? LEU A 197 . ? 1_555 ? 31 AC3 22 PHE A 123 ? PHE A 198 . ? 1_555 ? 32 AC3 22 CYS A 124 ? CYS A 199 . ? 1_555 ? 33 AC3 22 TYR A 125 ? TYR A 200 . ? 1_555 ? 34 AC3 22 VAL A 150 ? VAL A 225 . ? 1_555 ? 35 AC3 22 HOH E . ? HOH A 403 . ? 1_555 ? 36 AC3 22 HOH E . ? HOH A 408 . ? 1_555 ? 37 AC3 22 HOH E . ? HOH A 428 . ? 1_555 ? 38 AC3 22 HOH E . ? HOH A 435 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 MN A MN 302 ? ? O A HOH 401 ? ? 0.75 2 1 MN A MN 301 ? ? O A HOH 401 ? ? 1.00 3 1 OD2 A ASP 128 ? ? O A HOH 401 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 402 ? ? 1_555 O A HOH 402 ? ? 2_657 1.94 2 1 O A HOH 444 ? ? 1_555 O A HOH 445 ? ? 2_556 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 118 ? ? -102.20 45.07 2 1 LYS A 135 ? ? -171.36 144.08 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 432 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 6PUP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 76 ? A SER 1 2 1 Y 1 A SER 77 ? A SER 2 3 1 Y 1 A ARG 78 ? A ARG 3 4 1 Y 1 A LYS 79 ? A LYS 4 5 1 Y 1 A LEU 80 ? A LEU 5 6 1 Y 1 A LYS 250 ? A LYS 175 7 1 Y 1 A ALA 251 ? A ALA 176 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FMN N1 N N N 88 FMN C2 C N N 89 FMN O2 O N N 90 FMN N3 N N N 91 FMN C4 C N N 92 FMN O4 O N N 93 FMN C4A C N N 94 FMN N5 N N N 95 FMN C5A C Y N 96 FMN C6 C Y N 97 FMN C7 C Y N 98 FMN C7M C N N 99 FMN C8 C Y N 100 FMN C8M C N N 101 FMN C9 C Y N 102 FMN C9A C Y N 103 FMN N10 N N N 104 FMN C10 C N N 105 FMN "C1'" C N N 106 FMN "C2'" C N S 107 FMN "O2'" O N N 108 FMN "C3'" C N S 109 FMN "O3'" O N N 110 FMN "C4'" C N R 111 FMN "O4'" O N N 112 FMN "C5'" C N N 113 FMN "O5'" O N N 114 FMN P P N N 115 FMN O1P O N N 116 FMN O2P O N N 117 FMN O3P O N N 118 FMN HN3 H N N 119 FMN H6 H N N 120 FMN HM71 H N N 121 FMN HM72 H N N 122 FMN HM73 H N N 123 FMN HM81 H N N 124 FMN HM82 H N N 125 FMN HM83 H N N 126 FMN H9 H N N 127 FMN "H1'1" H N N 128 FMN "H1'2" H N N 129 FMN "H2'" H N N 130 FMN "HO2'" H N N 131 FMN "H3'" H N N 132 FMN "HO3'" H N N 133 FMN "H4'" H N N 134 FMN "HO4'" H N N 135 FMN "H5'1" H N N 136 FMN "H5'2" H N N 137 FMN HOP2 H N N 138 FMN HOP3 H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 LEU N N N N 235 LEU CA C N S 236 LEU C C N N 237 LEU O O N N 238 LEU CB C N N 239 LEU CG C N N 240 LEU CD1 C N N 241 LEU CD2 C N N 242 LEU OXT O N N 243 LEU H H N N 244 LEU H2 H N N 245 LEU HA H N N 246 LEU HB2 H N N 247 LEU HB3 H N N 248 LEU HG H N N 249 LEU HD11 H N N 250 LEU HD12 H N N 251 LEU HD13 H N N 252 LEU HD21 H N N 253 LEU HD22 H N N 254 LEU HD23 H N N 255 LEU HXT H N N 256 LYS N N N N 257 LYS CA C N S 258 LYS C C N N 259 LYS O O N N 260 LYS CB C N N 261 LYS CG C N N 262 LYS CD C N N 263 LYS CE C N N 264 LYS NZ N N N 265 LYS OXT O N N 266 LYS H H N N 267 LYS H2 H N N 268 LYS HA H N N 269 LYS HB2 H N N 270 LYS HB3 H N N 271 LYS HG2 H N N 272 LYS HG3 H N N 273 LYS HD2 H N N 274 LYS HD3 H N N 275 LYS HE2 H N N 276 LYS HE3 H N N 277 LYS HZ1 H N N 278 LYS HZ2 H N N 279 LYS HZ3 H N N 280 LYS HXT H N N 281 MET N N N N 282 MET CA C N S 283 MET C C N N 284 MET O O N N 285 MET CB C N N 286 MET CG C N N 287 MET SD S N N 288 MET CE C N N 289 MET OXT O N N 290 MET H H N N 291 MET H2 H N N 292 MET HA H N N 293 MET HB2 H N N 294 MET HB3 H N N 295 MET HG2 H N N 296 MET HG3 H N N 297 MET HE1 H N N 298 MET HE2 H N N 299 MET HE3 H N N 300 MET HXT H N N 301 MN MN MN N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FMN N1 C2 sing N N 83 FMN N1 C10 doub N N 84 FMN C2 O2 doub N N 85 FMN C2 N3 sing N N 86 FMN N3 C4 sing N N 87 FMN N3 HN3 sing N N 88 FMN C4 O4 doub N N 89 FMN C4 C4A sing N N 90 FMN C4A N5 doub N N 91 FMN C4A C10 sing N N 92 FMN N5 C5A sing N N 93 FMN C5A C6 doub Y N 94 FMN C5A C9A sing Y N 95 FMN C6 C7 sing Y N 96 FMN C6 H6 sing N N 97 FMN C7 C7M sing N N 98 FMN C7 C8 doub Y N 99 FMN C7M HM71 sing N N 100 FMN C7M HM72 sing N N 101 FMN C7M HM73 sing N N 102 FMN C8 C8M sing N N 103 FMN C8 C9 sing Y N 104 FMN C8M HM81 sing N N 105 FMN C8M HM82 sing N N 106 FMN C8M HM83 sing N N 107 FMN C9 C9A doub Y N 108 FMN C9 H9 sing N N 109 FMN C9A N10 sing N N 110 FMN N10 C10 sing N N 111 FMN N10 "C1'" sing N N 112 FMN "C1'" "C2'" sing N N 113 FMN "C1'" "H1'1" sing N N 114 FMN "C1'" "H1'2" sing N N 115 FMN "C2'" "O2'" sing N N 116 FMN "C2'" "C3'" sing N N 117 FMN "C2'" "H2'" sing N N 118 FMN "O2'" "HO2'" sing N N 119 FMN "C3'" "O3'" sing N N 120 FMN "C3'" "C4'" sing N N 121 FMN "C3'" "H3'" sing N N 122 FMN "O3'" "HO3'" sing N N 123 FMN "C4'" "O4'" sing N N 124 FMN "C4'" "C5'" sing N N 125 FMN "C4'" "H4'" sing N N 126 FMN "O4'" "HO4'" sing N N 127 FMN "C5'" "O5'" sing N N 128 FMN "C5'" "H5'1" sing N N 129 FMN "C5'" "H5'2" sing N N 130 FMN "O5'" P sing N N 131 FMN P O1P doub N N 132 FMN P O2P sing N N 133 FMN P O3P sing N N 134 FMN O2P HOP2 sing N N 135 FMN O3P HOP3 sing N N 136 GLN N CA sing N N 137 GLN N H sing N N 138 GLN N H2 sing N N 139 GLN CA C sing N N 140 GLN CA CB sing N N 141 GLN CA HA sing N N 142 GLN C O doub N N 143 GLN C OXT sing N N 144 GLN CB CG sing N N 145 GLN CB HB2 sing N N 146 GLN CB HB3 sing N N 147 GLN CG CD sing N N 148 GLN CG HG2 sing N N 149 GLN CG HG3 sing N N 150 GLN CD OE1 doub N N 151 GLN CD NE2 sing N N 152 GLN NE2 HE21 sing N N 153 GLN NE2 HE22 sing N N 154 GLN OXT HXT sing N N 155 GLU N CA sing N N 156 GLU N H sing N N 157 GLU N H2 sing N N 158 GLU CA C sing N N 159 GLU CA CB sing N N 160 GLU CA HA sing N N 161 GLU C O doub N N 162 GLU C OXT sing N N 163 GLU CB CG sing N N 164 GLU CB HB2 sing N N 165 GLU CB HB3 sing N N 166 GLU CG CD sing N N 167 GLU CG HG2 sing N N 168 GLU CG HG3 sing N N 169 GLU CD OE1 doub N N 170 GLU CD OE2 sing N N 171 GLU OE2 HE2 sing N N 172 GLU OXT HXT sing N N 173 GLY N CA sing N N 174 GLY N H sing N N 175 GLY N H2 sing N N 176 GLY CA C sing N N 177 GLY CA HA2 sing N N 178 GLY CA HA3 sing N N 179 GLY C O doub N N 180 GLY C OXT sing N N 181 GLY OXT HXT sing N N 182 HIS N CA sing N N 183 HIS N H sing N N 184 HIS N H2 sing N N 185 HIS CA C sing N N 186 HIS CA CB sing N N 187 HIS CA HA sing N N 188 HIS C O doub N N 189 HIS C OXT sing N N 190 HIS CB CG sing N N 191 HIS CB HB2 sing N N 192 HIS CB HB3 sing N N 193 HIS CG ND1 sing Y N 194 HIS CG CD2 doub Y N 195 HIS ND1 CE1 doub Y N 196 HIS ND1 HD1 sing N N 197 HIS CD2 NE2 sing Y N 198 HIS CD2 HD2 sing N N 199 HIS CE1 NE2 sing Y N 200 HIS CE1 HE1 sing N N 201 HIS NE2 HE2 sing N N 202 HIS OXT HXT sing N N 203 HOH O H1 sing N N 204 HOH O H2 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 THR N CA sing N N 344 THR N H sing N N 345 THR N H2 sing N N 346 THR CA C sing N N 347 THR CA CB sing N N 348 THR CA HA sing N N 349 THR C O doub N N 350 THR C OXT sing N N 351 THR CB OG1 sing N N 352 THR CB CG2 sing N N 353 THR CB HB sing N N 354 THR OG1 HG1 sing N N 355 THR CG2 HG21 sing N N 356 THR CG2 HG22 sing N N 357 THR CG2 HG23 sing N N 358 THR OXT HXT sing N N 359 TRP N CA sing N N 360 TRP N H sing N N 361 TRP N H2 sing N N 362 TRP CA C sing N N 363 TRP CA CB sing N N 364 TRP CA HA sing N N 365 TRP C O doub N N 366 TRP C OXT sing N N 367 TRP CB CG sing N N 368 TRP CB HB2 sing N N 369 TRP CB HB3 sing N N 370 TRP CG CD1 doub Y N 371 TRP CG CD2 sing Y N 372 TRP CD1 NE1 sing Y N 373 TRP CD1 HD1 sing N N 374 TRP CD2 CE2 doub Y N 375 TRP CD2 CE3 sing Y N 376 TRP NE1 CE2 sing Y N 377 TRP NE1 HE1 sing N N 378 TRP CE2 CZ2 sing Y N 379 TRP CE3 CZ3 doub Y N 380 TRP CE3 HE3 sing N N 381 TRP CZ2 CH2 doub Y N 382 TRP CZ2 HZ2 sing N N 383 TRP CZ3 CH2 sing Y N 384 TRP CZ3 HZ3 sing N N 385 TRP CH2 HH2 sing N N 386 TRP OXT HXT sing N N 387 TYR N CA sing N N 388 TYR N H sing N N 389 TYR N H2 sing N N 390 TYR CA C sing N N 391 TYR CA CB sing N N 392 TYR CA HA sing N N 393 TYR C O doub N N 394 TYR C OXT sing N N 395 TYR CB CG sing N N 396 TYR CB HB2 sing N N 397 TYR CB HB3 sing N N 398 TYR CG CD1 doub Y N 399 TYR CG CD2 sing Y N 400 TYR CD1 CE1 sing Y N 401 TYR CD1 HD1 sing N N 402 TYR CD2 CE2 doub Y N 403 TYR CD2 HD2 sing N N 404 TYR CE1 CZ doub Y N 405 TYR CE1 HE1 sing N N 406 TYR CE2 CZ sing Y N 407 TYR CE2 HE2 sing N N 408 TYR CZ OH sing N N 409 TYR OH HH sing N N 410 TYR OXT HXT sing N N 411 VAL N CA sing N N 412 VAL N H sing N N 413 VAL N H2 sing N N 414 VAL CA C sing N N 415 VAL CA CB sing N N 416 VAL CA HA sing N N 417 VAL C O doub N N 418 VAL C OXT sing N N 419 VAL CB CG1 sing N N 420 VAL CB CG2 sing N N 421 VAL CB HB sing N N 422 VAL CG1 HG11 sing N N 423 VAL CG1 HG12 sing N N 424 VAL CG1 HG13 sing N N 425 VAL CG2 HG21 sing N N 426 VAL CG2 HG22 sing N N 427 VAL CG2 HG23 sing N N 428 VAL OXT HXT sing N N 429 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id FMN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id FMN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6PUP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016060 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008797 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018237 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MN N O P S # loop_