HEADER STRUCTURAL PROTEIN/DNA 22-JUL-19 6PWE TITLE CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A; COMPND 11 CHAIN: C, G; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HISTONE H2B; COMPND 15 CHAIN: D, H; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: DNA (147-MER); COMPND 19 CHAIN: I; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: DNA (147-MER); COMPND 23 CHAIN: J; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: HIS3, HIS3:CG31613, CG31613, HIS3:CG33803, CG33803, SOURCE 6 HIS3:CG33806, CG33806, HIS3:CG33809, CG33809, HIS3:CG33812, CG33812, SOURCE 7 HIS3:CG33815, CG33815, HIS3:CG33818, CG33818, HIS3:CG33821, CG33821, SOURCE 8 HIS3:CG33824, CG33824, HIS3:CG33827, CG33827, HIS3:CG33830, CG33830, SOURCE 9 HIS3:CG33833, CG33833, HIS3:CG33836, CG33836, HIS3:CG33839, CG33839, SOURCE 10 HIS3:CG33842, CG33842, HIS3:CG33845, CG33845, HIS3:CG33848, CG33848, SOURCE 11 HIS3:CG33851, CG33851, HIS3:CG33854, CG33854, HIS3:CG33857, CG33857, SOURCE 12 HIS3:CG33860, CG33860, HIS3:CG33863, CG33863, HIS3:CG33866, CG33866; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 2; SOURCE 16 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 17 ORGANISM_COMMON: FRUIT FLY; SOURCE 18 ORGANISM_TAXID: 7227; SOURCE 19 GENE: HIS4R, BCDNA:RH52884, CG3379, DMEL\CG3379, FBTR0082962, H4R, SOURCE 20 HIS4-88CD, HIS4R, CG3379, DMEL_CG3379; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 25 ORGANISM_COMMON: FRUIT FLY; SOURCE 26 ORGANISM_TAXID: 7227; SOURCE 27 GENE: HIS2A, H2A, HIS2A:CG31618, CG31618, HIS2A:CG33808, CG33808, SOURCE 28 HIS2A:CG33814, CG33814, HIS2A:CG33817, CG33817, HIS2A:CG33820, SOURCE 29 CG33820, HIS2A:CG33823, CG33823, HIS2A:CG33826, CG33826, SOURCE 30 HIS2A:CG33829, CG33829, HIS2A:CG33832, CG33832, HIS2A:CG33835, SOURCE 31 CG33835, HIS2A:CG33838, CG33838, HIS2A:CG33841, CG33841, SOURCE 32 HIS2A:CG33844, CG33844, HIS2A:CG33847, CG33847, HIS2A:CG33850, SOURCE 33 CG33850, HIS2A:CG33862, CG33862, HIS2A:CG33865, CG33865; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 36 MOL_ID: 4; SOURCE 37 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 38 ORGANISM_COMMON: FRUIT FLY; SOURCE 39 ORGANISM_TAXID: 7227; SOURCE 40 GENE: HIS2B, HIS2B:CG17949, CG17949, HIS2B:CG33868, CG33868, SOURCE 41 HIS2B:CG33870, CG33870, HIS2B:CG33872, CG33872, HIS2B:CG33874, SOURCE 42 CG33874, HIS2B:CG33876, CG33876, HIS2B:CG33878, CG33878, SOURCE 43 HIS2B:CG33880, CG33880, HIS2B:CG33882, CG33882, HIS2B:CG33884, SOURCE 44 CG33884, HIS2B:CG33886, CG33886, HIS2B:CG33888, CG33888, SOURCE 45 HIS2B:CG33890, CG33890, HIS2B:CG33892, CG33892, HIS2B:CG33894, SOURCE 46 CG33894, HIS2B:CG33896, CG33896, HIS2B:CG33898, CG33898, SOURCE 47 HIS2B:CG33900, CG33900, HIS2B:CG33902, CG33902, HIS2B:CG33904, SOURCE 48 CG33904, HIS2B:CG33906, CG33906, HIS2B:CG33908, CG33908, SOURCE 49 HIS2B:CG33910, CG33910; SOURCE 50 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 51 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 52 MOL_ID: 5; SOURCE 53 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 54 ORGANISM_TAXID: 32630; SOURCE 55 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 56 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 57 MOL_ID: 6; SOURCE 58 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 59 ORGANISM_TAXID: 32630; SOURCE 60 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 61 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSOME, HISTONE, DNA, DNA-BINDING PROTEIN, STRUCTURAL PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.CHITTORI,S.SUBRAMANIAM REVDAT 5 20-MAR-24 6PWE 1 REMARK REVDAT 4 04-DEC-19 6PWE 1 REMARK REVDAT 3 02-OCT-19 6PWE 1 JRNL REVDAT 2 28-AUG-19 6PWE 1 JRNL REVDAT 1 21-AUG-19 6PWE 0 JRNL AUTH S.CHITTORI,J.HONG,Y.BAI,S.SUBRAMANIAM JRNL TITL STRUCTURE OF THE PRIMED STATE OF THE ATPASE DOMAIN OF JRNL TITL 2 CHROMATIN REMODELING FACTOR ISWI BOUND TO THE NUCLEOSOME. JRNL REF NUCLEIC ACIDS RES. V. 47 9400 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31402386 JRNL DOI 10.1093/NAR/GKZ670 REMARK 2 REMARK 2 RESOLUTION. 3.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.950 REMARK 3 NUMBER OF PARTICLES : 52917 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6PWE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000241415. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME CORE PARTICLE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3900.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 ARG A 134 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 LYS C 8 REMARK 465 VAL C 9 REMARK 465 LYS C 10 REMARK 465 GLY C 11 REMARK 465 LYS C 12 REMARK 465 ALA C 13 REMARK 465 LYS C 117 REMARK 465 LYS C 118 REMARK 465 THR C 119 REMARK 465 GLU C 120 REMARK 465 LYS C 121 REMARK 465 LYS C 122 REMARK 465 ALA C 123 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 PRO D 2 REMARK 465 LYS D 3 REMARK 465 THR D 4 REMARK 465 SER D 5 REMARK 465 GLY D 6 REMARK 465 LYS D 7 REMARK 465 ALA D 8 REMARK 465 ALA D 9 REMARK 465 LYS D 10 REMARK 465 LYS D 11 REMARK 465 ALA D 12 REMARK 465 GLY D 13 REMARK 465 LYS D 14 REMARK 465 ALA D 15 REMARK 465 GLN D 16 REMARK 465 LYS D 17 REMARK 465 ASN D 18 REMARK 465 ILE D 19 REMARK 465 THR D 20 REMARK 465 LYS D 21 REMARK 465 THR D 22 REMARK 465 ASP D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 LYS D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 122 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ARG E 134 REMARK 465 ALA E 135 REMARK 465 MET F 0 REMARK 465 THR F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 MET G 0 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLY G 6 REMARK 465 GLY G 7 REMARK 465 LYS G 8 REMARK 465 VAL G 9 REMARK 465 LYS G 10 REMARK 465 GLY G 11 REMARK 465 LYS G 12 REMARK 465 ALA G 13 REMARK 465 LYS G 117 REMARK 465 LYS G 118 REMARK 465 THR G 119 REMARK 465 GLU G 120 REMARK 465 LYS G 121 REMARK 465 LYS G 122 REMARK 465 ALA G 123 REMARK 465 MET H 0 REMARK 465 PRO H 1 REMARK 465 PRO H 2 REMARK 465 LYS H 3 REMARK 465 THR H 4 REMARK 465 SER H 5 REMARK 465 GLY H 6 REMARK 465 LYS H 7 REMARK 465 ALA H 8 REMARK 465 ALA H 9 REMARK 465 LYS H 10 REMARK 465 LYS H 11 REMARK 465 ALA H 12 REMARK 465 GLY H 13 REMARK 465 LYS H 14 REMARK 465 ALA H 15 REMARK 465 GLN H 16 REMARK 465 LYS H 17 REMARK 465 ASN H 18 REMARK 465 ILE H 19 REMARK 465 THR H 20 REMARK 465 LYS H 21 REMARK 465 THR H 22 REMARK 465 ASP H 23 REMARK 465 LYS H 24 REMARK 465 LYS H 25 REMARK 465 LYS H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA I -55 O3' DA I -55 C3' -0.036 REMARK 500 DG I 27 O3' DG I 27 C3' -0.043 REMARK 500 DG I 38 O3' DG I 38 C3' -0.046 REMARK 500 DA J 16 O3' DA J 16 C3' -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I -57 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC I -52 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC I -25 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT I 22 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC J -27 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA J -9 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC J -4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA J 59 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA J 63 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 63.78 60.14 REMARK 500 PRO A 121 0.47 -64.16 REMARK 500 VAL B 65 -53.34 -122.69 REMARK 500 ARG C 34 -30.38 -131.94 REMARK 500 GLN C 103 47.51 38.54 REMARK 500 LYS D 31 178.82 167.23 REMARK 500 GLU D 102 -7.46 71.62 REMARK 500 LYS E 56 -30.01 -130.74 REMARK 500 ASP E 81 63.78 60.19 REMARK 500 PRO E 121 0.54 -64.23 REMARK 500 VAL F 65 -53.29 -122.75 REMARK 500 ARG G 34 -30.48 -131.85 REMARK 500 GLN G 103 47.61 38.45 REMARK 500 LYS H 31 178.83 167.25 REMARK 500 GLU H 102 -7.47 71.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS D 29 ARG D 30 -127.05 REMARK 500 ARG D 30 LYS D 31 140.19 REMARK 500 LYS H 29 ARG H 30 -127.10 REMARK 500 ARG H 30 LYS H 31 140.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-20506 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF NUCLEOSOME CORE PARTICLE REMARK 900 RELATED ID: EMD-20507 RELATED DB: EMDB DBREF 6PWE A 0 135 UNP P02299 H3_DROME 1 136 DBREF1 6PWE B 0 102 UNP A0A0B4KFZ9_DROME DBREF2 6PWE B A0A0B4KFZ9 1 103 DBREF 6PWE C 0 123 UNP P84051 H2A_DROME 1 124 DBREF 6PWE D 0 122 UNP P02283 H2B_DROME 1 123 DBREF 6PWE E 0 135 UNP P02299 H3_DROME 1 136 DBREF1 6PWE F 0 102 UNP A0A0B4KFZ9_DROME DBREF2 6PWE F A0A0B4KFZ9 1 103 DBREF 6PWE G 0 123 UNP P84051 H2A_DROME 1 124 DBREF 6PWE H 0 122 UNP P02283 H2B_DROME 1 123 DBREF 6PWE I -73 73 PDB 6PWE 6PWE -73 73 DBREF 6PWE J -73 73 PDB 6PWE 6PWE -73 73 SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET THR GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 124 MET SER GLY ARG GLY LYS GLY GLY LYS VAL LYS GLY LYS SEQRES 2 C 124 ALA LYS SER ARG SER ASN ARG ALA GLY LEU GLN PHE PRO SEQRES 3 C 124 VAL GLY ARG ILE HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 C 124 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 C 124 ALA VAL MET GLU TYR LEU ALA ALA GLU VAL LEU GLU LEU SEQRES 6 C 124 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 C 124 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 8 C 124 GLU LEU ASN LYS LEU LEU SER GLY VAL THR ILE ALA GLN SEQRES 9 C 124 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 10 C 124 LYS LYS THR GLU LYS LYS ALA SEQRES 1 D 123 MET PRO PRO LYS THR SER GLY LYS ALA ALA LYS LYS ALA SEQRES 2 D 123 GLY LYS ALA GLN LYS ASN ILE THR LYS THR ASP LYS LYS SEQRES 3 D 123 LYS LYS ARG LYS ARG LYS GLU SER TYR ALA ILE TYR ILE SEQRES 4 D 123 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 5 D 123 SER SER LYS ALA MET SER ILE MET ASN SER PHE VAL ASN SEQRES 6 D 123 ASP ILE PHE GLU ARG ILE ALA ALA GLU ALA SER ARG LEU SEQRES 7 D 123 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 8 D 123 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 9 D 123 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 10 D 123 LYS TYR THR SER SER LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET THR GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 124 MET SER GLY ARG GLY LYS GLY GLY LYS VAL LYS GLY LYS SEQRES 2 G 124 ALA LYS SER ARG SER ASN ARG ALA GLY LEU GLN PHE PRO SEQRES 3 G 124 VAL GLY ARG ILE HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 G 124 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 G 124 ALA VAL MET GLU TYR LEU ALA ALA GLU VAL LEU GLU LEU SEQRES 6 G 124 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 G 124 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 8 G 124 GLU LEU ASN LYS LEU LEU SER GLY VAL THR ILE ALA GLN SEQRES 9 G 124 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 10 G 124 LYS LYS THR GLU LYS LYS ALA SEQRES 1 H 123 MET PRO PRO LYS THR SER GLY LYS ALA ALA LYS LYS ALA SEQRES 2 H 123 GLY LYS ALA GLN LYS ASN ILE THR LYS THR ASP LYS LYS SEQRES 3 H 123 LYS LYS ARG LYS ARG LYS GLU SER TYR ALA ILE TYR ILE SEQRES 4 H 123 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 5 H 123 SER SER LYS ALA MET SER ILE MET ASN SER PHE VAL ASN SEQRES 6 H 123 ASP ILE PHE GLU ARG ILE ALA ALA GLU ALA SER ARG LEU SEQRES 7 H 123 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 8 H 123 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 9 H 123 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 10 H 123 LYS TYR THR SER SER LYS SEQRES 1 I 147 DA DT DC DG DG DA DT DG DT DA DT DA DT SEQRES 2 I 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 I 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 I 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 I 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 I 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 I 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 I 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 I 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 I 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 I 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 I 147 DC DG DA DT SEQRES 1 J 147 DA DT DC DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 147 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 147 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 147 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 147 DC DG DA DT HELIX 1 AA1 VAL A 46 GLU A 50 5 5 HELIX 2 AA2 LYS A 64 ALA A 75 1 12 HELIX 3 AA3 ALA A 88 GLU A 105 1 18 HELIX 4 AA4 ASN A 108 HIS A 113 1 6 HELIX 5 AA5 MET A 120 ARG A 128 1 9 HELIX 6 AA6 ASP B 24 ILE B 29 5 6 HELIX 7 AA7 THR B 30 ARG B 39 1 10 HELIX 8 AA8 LEU B 49 GLU B 63 1 15 HELIX 9 AA9 ILE B 66 ALA B 76 1 11 HELIX 10 AB1 THR B 82 GLN B 93 1 12 HELIX 11 AB2 ARG C 16 GLY C 21 1 6 HELIX 12 AB3 ARG C 28 LEU C 33 1 6 HELIX 13 AB4 GLY C 45 ASN C 72 1 28 HELIX 14 AB5 ILE C 78 ASN C 88 1 11 HELIX 15 AB6 ASP C 89 LYS C 94 1 6 HELIX 16 AB7 TYR D 34 LYS D 43 1 10 HELIX 17 AB8 LYS D 54 TYR D 80 1 27 HELIX 18 AB9 THR D 87 ALA D 94 1 8 HELIX 19 AC1 LEU D 103 LYS D 117 1 15 HELIX 20 AC2 VAL E 46 GLU E 50 5 5 HELIX 21 AC3 LYS E 64 ALA E 75 1 12 HELIX 22 AC4 ALA E 88 GLU E 105 1 18 HELIX 23 AC5 ASN E 108 HIS E 113 1 6 HELIX 24 AC6 MET E 120 ARG E 128 1 9 HELIX 25 AC7 ASP F 24 ILE F 29 5 6 HELIX 26 AC8 THR F 30 ARG F 39 1 10 HELIX 27 AC9 LEU F 49 GLU F 63 1 15 HELIX 28 AD1 ILE F 66 ALA F 76 1 11 HELIX 29 AD2 THR F 82 GLN F 93 1 12 HELIX 30 AD3 ARG G 16 GLY G 21 1 6 HELIX 31 AD4 ARG G 28 LEU G 33 1 6 HELIX 32 AD5 GLY G 45 ASN G 72 1 28 HELIX 33 AD6 ILE G 78 ASN G 88 1 11 HELIX 34 AD7 ASP G 89 LYS G 94 1 6 HELIX 35 AD8 TYR H 34 LYS H 43 1 10 HELIX 36 AD9 LYS H 54 TYR H 80 1 27 HELIX 37 AE1 THR H 87 ALA H 94 1 8 HELIX 38 AE2 LEU H 103 LYS H 117 1 15 SHEET 1 AA1 2 THR A 118 ILE A 119 0 SHEET 2 AA1 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA2 2 ARG C 41 VAL C 42 0 SHEET 2 AA2 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 41 SHEET 1 AA3 2 ARG C 76 ILE C 77 0 SHEET 2 AA3 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 77 SHEET 1 AA4 2 THR E 118 ILE E 119 0 SHEET 2 AA4 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA5 2 ARG G 41 VAL G 42 0 SHEET 2 AA5 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 41 SHEET 1 AA6 2 ARG G 76 ILE G 77 0 SHEET 2 AA6 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000