HEADER HYDROLASE/HYDROLASE INHIBITOR 24-JUL-19 6PX5 TITLE CRYSTAL STRUCTURE OF HUMAN MEIZOTHROMBIN DESF1 MUTANT S195A BOUND WITH TITLE 2 PPACK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTHROMBIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: COAGULATION FACTOR II; COMPND 11 EC: 3.4.21.5; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL: BABY HAMSTER KIDNEY CELLS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F2; SOURCE 14 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 16 EXPRESSION_SYSTEM_CELL: BABY HAMSTER KIDNEY CELLS KEYWDS HYDROLASE, SERINE PROTEASE, INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.A.PELC,S.K.KOESTER,Z.CHEN,N.GISTOVER,E.DI CERA REVDAT 5 23-OCT-24 6PX5 1 REMARK REVDAT 4 11-OCT-23 6PX5 1 HETSYN REVDAT 3 29-JUL-20 6PX5 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 11-DEC-19 6PX5 1 REMARK REVDAT 1 04-SEP-19 6PX5 0 JRNL AUTH L.A.PELC,S.K.KOESTER,Z.CHEN,N.E.GISTOVER,E.DI CERA JRNL TITL RESIDUES W215, E217 AND E192 CONTROL THE ALLOSTERIC E*-E JRNL TITL 2 EQUILIBRIUM OF THROMBIN. JRNL REF SCI REP V. 9 12304 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31444378 JRNL DOI 10.1038/S41598-019-48839-1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 24293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1782 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.4380 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -7.27000 REMARK 3 B12 (A**2) : 1.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3269 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2936 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4416 ; 1.714 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6828 ; 2.268 ; 1.611 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 9.220 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;35.279 ;22.032 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 542 ;20.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;21.024 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3E6P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM ZINC SULFATE, 100 MM MES, PH REMARK 280 6.5, 25% PEG 550 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.11933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.55967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.55967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.11933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN X 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA X 267 REMARK 465 ILE X 268 REMARK 465 GLU X 269 REMARK 465 GLY X 270 REMARK 465 ARG X 271 REMARK 465 THR X 272 REMARK 465 ALA X 273 REMARK 465 THR X 274 REMARK 465 SER X 275 REMARK 465 GLU X 276 REMARK 465 GLY X 319 REMARK 465 ARG X 320 REMARK 465 LYS B 144A REMARK 465 GLU B 144B REMARK 465 THR B 144C REMARK 465 TRP B 144D REMARK 465 THR B 144E REMARK 465 ALA B 144F REMARK 465 ASN B 144G REMARK 465 VAL B 144H REMARK 465 GLY B 144I REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN X 278 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG X 174 44.60 35.49 REMARK 500 GLU X 216 -113.86 56.80 REMARK 500 CYS X 219 108.75 -39.49 REMARK 500 ALA X 234 -156.30 -152.49 REMARK 500 PHE X 299 -85.65 -145.87 REMARK 500 LYS B 36 -70.76 -59.49 REMARK 500 GLN B 38 109.38 -52.17 REMARK 500 TYR B 60A 82.40 -159.53 REMARK 500 SER B 72 84.93 74.43 REMARK 500 ARG B 73 102.79 -51.73 REMARK 500 THR B 74 67.67 -69.00 REMARK 500 TYR B 76 68.69 26.24 REMARK 500 ARG B 77A 118.13 46.86 REMARK 500 GLU B 97A -87.09 -116.25 REMARK 500 ARG B 187 -162.12 -119.98 REMARK 500 ASN B 204B 11.02 -144.74 REMARK 500 SER B 214 -68.81 -130.97 REMARK 500 ASP B 221 57.74 38.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 187 NE2 REMARK 620 2 HIS X 187 NE2 0.0 REMARK 620 3 GLU B 97A OE2 86.2 86.2 REMARK 620 4 GLU B 97A OE2 86.2 86.2 0.0 REMARK 620 5 HOH B 901 O 170.6 170.6 96.9 96.9 REMARK 620 6 HOH B 901 O 92.7 92.7 75.4 75.4 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 226 OE1 REMARK 620 2 GLU X 254 OE1 144.9 REMARK 620 3 HOH X 503 O 95.9 118.0 REMARK 620 4 ASP B 178 OD2 74.1 111.7 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 802 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 184A O REMARK 620 2 ARG B 221A O 145.6 REMARK 620 3 LYS B 224 O 121.6 77.8 REMARK 620 4 HOH B 904 O 61.9 84.2 117.2 REMARK 620 5 HOH B 905 O 146.6 64.6 67.2 147.4 REMARK 620 6 HOH B 907 O 67.1 147.1 84.8 128.7 83.0 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 B 801 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E6P RELATED DB: PDB DBREF 6PX5 X 169 320 UNP P00734 THRB_HUMAN 212 363 DBREF 6PX5 B 16 247 UNP P00734 THRB_HUMAN 364 622 SEQADV 6PX5 ALA B 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 X 152 GLN CYS VAL PRO ASP ARG GLY GLN GLN TYR GLN GLY ARG SEQRES 2 X 152 LEU ALA VAL THR THR HIS GLY LEU PRO CYS LEU ALA TRP SEQRES 3 X 152 ALA SER ALA GLN ALA LYS ALA LEU SER LYS HIS GLN ASP SEQRES 4 X 152 PHE ASN SER ALA VAL GLN LEU VAL GLU ASN PHE CYS ARG SEQRES 5 X 152 ASN PRO ASP GLY ASP GLU GLU GLY VAL TRP CYS TYR VAL SEQRES 6 X 152 ALA GLY LYS PRO GLY ASP PHE GLY TYR CYS ASP LEU ASN SEQRES 7 X 152 TYR CYS GLU GLU ALA VAL GLU GLU GLU THR GLY ASP GLY SEQRES 8 X 152 LEU ASP GLU ASP SER ASP ARG ALA ILE GLU GLY ARG THR SEQRES 9 X 152 ALA THR SER GLU TYR GLN THR PHE PHE ASN PRO ARG THR SEQRES 10 X 152 PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU SEQRES 11 X 152 PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU SEQRES 12 X 152 LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU HET NAG A 1 14 HET NAG A 2 14 HET ZN X 401 1 HET ZN X 402 1 HET 0G6 B 801 30 HET NA B 802 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 0G6 PPACK FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 0G6 C21 H34 CL N6 O3 1+ FORMUL 7 NA NA 1+ FORMUL 8 HOH *53(H2 O) HELIX 1 AA1 PRO X 172 GLN X 176 5 5 HELIX 2 AA2 SER X 196 LYS X 204 1 9 HELIX 3 AA3 ASN X 282 GLY X 287 1 6 HELIX 4 AA4 THR X 308 TYR X 316 1 9 HELIX 5 AA5 ALA B 55 CYS B 58 5 4 HELIX 6 AA6 PRO B 60B ASP B 60E 5 4 HELIX 7 AA7 THR B 60I ASN B 62 5 3 HELIX 8 AA8 ASP B 125 LEU B 130 1 9 HELIX 9 AA9 GLU B 164 SER B 171 1 8 HELIX 10 AB1 LEU B 234 GLN B 244 1 11 SHEET 1 AA1 2 TRP X 230 TYR X 232 0 SHEET 2 AA1 2 PHE X 240 TYR X 242 -1 O GLY X 241 N CYS X 231 SHEET 1 AA2 3 SER B 20 ASP B 21 0 SHEET 2 AA2 3 LEU B 155 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 AA2 3 LYS B 135 TRP B 141 -1 N GLY B 140 O GLN B 156 SHEET 1 AA3 7 LYS B 81 SER B 83 0 SHEET 2 AA3 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 3 AA3 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 4 AA3 7 GLU B 39 LEU B 46 -1 O LEU B 41 N LEU B 33 SHEET 5 AA3 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 6 AA3 7 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 7 AA3 7 LEU B 85 ILE B 90 -1 N TYR B 89 O LEU B 105 SHEET 1 AA4 2 LEU B 60 TYR B 60A 0 SHEET 2 AA4 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 AA5 4 MET B 180 ALA B 183 0 SHEET 2 AA5 4 GLY B 226 HIS B 230 -1 O TYR B 228 N PHE B 181 SHEET 3 AA5 4 TRP B 207 TRP B 215 -1 N TRP B 215 O PHE B 227 SHEET 4 AA5 4 PRO B 198 LYS B 202 -1 N MET B 201 O TYR B 208 SSBOND 1 CYS X 170 CYS X 248 1555 1555 2.07 SSBOND 2 CYS X 191 CYS X 231 1555 1555 2.05 SSBOND 3 CYS X 219 CYS X 243 1555 1555 2.08 SSBOND 4 CYS X 293 CYS B 122 1555 1555 2.08 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.00 SSBOND 6 CYS B 168 CYS B 182 1555 1555 2.04 SSBOND 7 CYS B 191 CYS B 220 1555 1555 2.02 LINK NE2 HIS B 57 C3 0G6 B 801 1555 1555 1.47 LINK ND2 ASN B 60G C1 NAG A 1 1555 1555 1.48 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.47 LINK NE2 HIS X 187 ZN ZN X 402 1555 1555 1.99 LINK NE2 HIS X 187 ZN ZN X 402 1555 6555 1.98 LINK OE1 GLU X 226 ZN ZN X 401 1555 1555 2.06 LINK OE1 GLU X 254 ZN ZN X 401 1555 1555 1.96 LINK ZN ZN X 401 O HOH X 503 1555 1555 2.15 LINK ZN ZN X 401 OD2 ASP B 178 1555 1555 2.02 LINK ZN ZN X 402 OE2 GLU B 97A 1555 1555 2.08 LINK ZN ZN X 402 OE2 GLU B 97A 6555 1555 2.13 LINK ZN ZN X 402 O HOH B 901 1555 1555 2.31 LINK ZN ZN X 402 O HOH B 901 1555 6555 2.32 LINK O TYR B 184A NA NA B 802 1555 1555 2.41 LINK O ARG B 221A NA NA B 802 1555 1555 2.37 LINK O LYS B 224 NA NA B 802 1555 1555 2.35 LINK NA NA B 802 O HOH B 904 1555 1555 2.55 LINK NA NA B 802 O HOH B 905 1555 1555 2.42 LINK NA NA B 802 O HOH B 907 1555 1555 2.45 CISPEP 1 SER B 36A PRO B 37 0 -1.50 CRYST1 100.134 100.134 118.679 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009987 0.005766 0.000000 0.00000 SCALE2 0.000000 0.011532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008426 0.00000