HEADER OXIDOREDUCTASE 30-JUL-19 6PYP TITLE BINARY COMPLEX OF HUMAN GLYCEROL 3-PHOSPHATE DEHYDROGENASE, R269A TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)], CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GPDH-C; COMPND 5 EC: 1.1.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK REVDAT 4 03-APR-24 6PYP 1 REMARK REVDAT 3 13-MAR-24 6PYP 1 REMARK REVDAT 2 28-OCT-20 6PYP 1 JRNL LINK REVDAT 1 08-JUL-20 6PYP 0 JRNL AUTH A.R.MHASHAL,A.ROMERO-RIVERA,L.S.MYDY,J.R.CRISTOBAL, JRNL AUTH 2 A.M.GULICK,J.P.RICHARD,S.C.L.KAMERLIN JRNL TITL MODELING THE ROLE OF A FLEXIBLE LOOP AND ACTIVE SITE SIDE JRNL TITL 2 CHAINS IN HYDRIDE TRANSFER CATALYZED BY GLYCEROL-3-PHOSPHATE JRNL TITL 3 DEHYDROGENASE. JRNL REF ACS CATALYSIS V. 10 11253 2020 JRNL REFN ESSN 2155-5435 JRNL PMID 33042609 JRNL DOI 10.1021/ACSCATAL.0C02757 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0000 - 1.9500 1.00 2820 126 0.1900 0.2600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1000243306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : APS 23IDB REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: STARTING MODEL WAS AN IN-HOUSE MODEL OF OPEN REMARK 200 CONFORMATION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 20000 175 MM KCL 0.1M BIS-TRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 GLU B 124 REMARK 465 GLY B 125 REMARK 465 PRO B 126 REMARK 465 ASN B 127 REMARK 465 GLY B 128 REMARK 465 LEU B 291 REMARK 465 LEU B 292 REMARK 465 ASN B 293 REMARK 465 GLY B 294 REMARK 465 GLN B 295 REMARK 465 LYS B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 VAL A 61 CG1 CG2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLN A 81 CG CD OE1 NE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 ASN A 293 CG OD1 ND2 REMARK 470 GLN A 295 CG CD OE1 NE2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLN A 298 CG CD OE1 NE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ASN B 112 CG OD1 ND2 REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 LEU B 129 CG CD1 CD2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 SER B 283 OG REMARK 470 ILE B 284 CG1 CG2 CD1 REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 LYS B 289 CG CD CE NZ REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 GLN B 298 CG CD OE1 NE2 REMARK 470 ARG B 304 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 LYS B 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 284 H GLU B 288 1.59 REMARK 500 HH12 ARG B 279 O HOH B 510 1.60 REMARK 500 O HOH B 621 O HOH B 624 1.95 REMARK 500 O HOH A 665 O HOH A 690 2.05 REMARK 500 O HOH A 501 O HOH A 507 2.08 REMARK 500 O HOH B 666 O HOH B 679 2.10 REMARK 500 O HOH B 667 O HOH B 672 2.12 REMARK 500 O HOH A 557 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE B 142 HE22 GLN B 286 2543 1.26 REMARK 500 HH22 ARG A 304 OD2 ASP B 103 1556 1.58 REMARK 500 O ILE B 142 NE2 GLN B 286 2543 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 214 CB CYS A 214 SG -0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 30.04 -154.64 REMARK 500 LEU A 64 56.87 -142.04 REMARK 500 VAL A 92 52.70 -146.29 REMARK 500 ASN A 293 23.27 49.85 REMARK 500 SER B 11 28.69 -154.78 REMARK 500 VAL B 92 58.86 -144.74 REMARK 500 ILE B 284 -67.13 148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 26 O REMARK 620 2 ALA B 27 O 75.0 REMARK 620 3 LEU B 29 O 80.7 103.8 REMARK 620 4 PHE B 32 O 79.1 153.6 76.8 REMARK 620 5 HOH B 526 O 114.5 60.9 151.5 128.1 REMARK 620 6 HOH B 614 O 142.8 140.8 95.2 64.1 86.4 REMARK 620 7 HOH B 634 O 128.2 64.8 78.8 139.1 72.9 86.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3SY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 DBREF 6PYP A 1 349 UNP P21695 GPDA_HUMAN 1 349 DBREF 6PYP B 1 349 UNP P21695 GPDA_HUMAN 1 349 SEQADV 6PYP ALA A 269 UNP P21695 ARG 269 ENGINEERED MUTATION SEQADV 6PYP ALA B 269 UNP P21695 ARG 269 ENGINEERED MUTATION SEQRES 1 A 349 MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN SEQRES 2 A 349 TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA SEQRES 3 A 349 ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP SEQRES 4 A 349 VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU SEQRES 5 A 349 ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO SEQRES 6 A 349 GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP SEQRES 7 A 349 VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE SEQRES 8 A 349 VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN SEQRES 9 A 349 LEU LYS GLY HIS LEU LYS ALA ASN ALA THR GLY ILE SER SEQRES 10 A 349 LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS SEQRES 11 A 349 LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO SEQRES 12 A 349 MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL SEQRES 13 A 349 ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS SEQRES 14 A 349 ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN SEQRES 15 A 349 THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP SEQRES 16 A 349 THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA SEQRES 17 A 349 VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP SEQRES 18 A 349 ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU SEQRES 19 A 349 MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL SEQRES 20 A 349 SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP SEQRES 21 A 349 LEU ILE THR THR CYS TYR GLY GLY ALA ASN ARG LYS VAL SEQRES 22 A 349 ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN SEQRES 23 A 349 LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY SEQRES 24 A 349 PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS SEQRES 25 A 349 LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL SEQRES 26 A 349 TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE SEQRES 27 A 349 ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET SEQRES 1 B 349 MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN SEQRES 2 B 349 TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA SEQRES 3 B 349 ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP SEQRES 4 B 349 VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU SEQRES 5 B 349 ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO SEQRES 6 B 349 GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP SEQRES 7 B 349 VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE SEQRES 8 B 349 VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN SEQRES 9 B 349 LEU LYS GLY HIS LEU LYS ALA ASN ALA THR GLY ILE SER SEQRES 10 B 349 LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS SEQRES 11 B 349 LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO SEQRES 12 B 349 MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL SEQRES 13 B 349 ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS SEQRES 14 B 349 ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN SEQRES 15 B 349 THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP SEQRES 16 B 349 THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA SEQRES 17 B 349 VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP SEQRES 18 B 349 ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU SEQRES 19 B 349 MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL SEQRES 20 B 349 SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP SEQRES 21 B 349 LEU ILE THR THR CYS TYR GLY GLY ALA ASN ARG LYS VAL SEQRES 22 B 349 ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN SEQRES 23 B 349 LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY SEQRES 24 B 349 PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS SEQRES 25 B 349 LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL SEQRES 26 B 349 TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE SEQRES 27 B 349 ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET HET NAD A 401 70 HET PO4 A 402 5 HET 3SY A 403 21 HET POP B 401 9 HET K B 402 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM PO4 PHOSPHATE ION HETNAM 3SY 2,2-BIS(HYDROXYMETHYL)PROPANE-1,3-DIOL HETNAM POP PYROPHOSPHATE 2- HETNAM K POTASSIUM ION FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 PO4 O4 P 3- FORMUL 5 3SY C5 H12 O4 FORMUL 6 POP H2 O7 P2 2- FORMUL 7 K K 1+ FORMUL 8 HOH *383(H2 O) HELIX 1 AA1 GLY A 12 LEU A 29 1 18 HELIX 2 AA2 LEU A 50 HIS A 58 1 9 HELIX 3 AA3 ASP A 78 GLU A 84 1 7 HELIX 4 AA4 PRO A 94 LYS A 106 1 13 HELIX 5 AA5 LEU A 131 GLY A 141 1 11 HELIX 6 AA6 ILE A 152 ASP A 158 1 7 HELIX 7 AA7 ASP A 170 GLN A 182 1 13 HELIX 8 AA8 GLU A 193 LEU A 217 1 25 HELIX 9 AA9 GLY A 220 CYS A 243 1 24 HELIX 10 AB1 SER A 248 GLU A 254 5 7 HELIX 11 AB2 GLY A 257 GLY A 267 1 11 HELIX 12 AB3 GLY A 268 GLY A 281 1 14 HELIX 13 AB4 SER A 283 LEU A 292 1 10 HELIX 14 AB5 LEU A 297 GLY A 314 1 18 HELIX 15 AB6 LEU A 315 LYS A 318 5 4 HELIX 16 AB7 PHE A 319 GLU A 331 1 13 HELIX 17 AB8 PRO A 334 GLN A 343 5 10 HELIX 18 AB9 HIS A 345 MET A 349 5 5 HELIX 19 AC1 GLY B 12 LEU B 29 1 18 HELIX 20 AC2 LEU B 50 HIS B 58 1 9 HELIX 21 AC3 ASP B 78 GLU B 84 1 7 HELIX 22 AC4 PRO B 94 LYS B 106 1 13 HELIX 23 AC5 LEU B 131 GLY B 141 1 11 HELIX 24 AC6 ILE B 152 ASP B 158 1 7 HELIX 25 AC7 ASP B 170 GLN B 182 1 13 HELIX 26 AC8 GLU B 193 LEU B 217 1 25 HELIX 27 AC9 GLY B 220 CYS B 243 1 24 HELIX 28 AD1 SER B 248 GLU B 254 5 7 HELIX 29 AD2 GLY B 257 GLY B 267 1 11 HELIX 30 AD3 GLY B 268 GLY B 281 1 14 HELIX 31 AD4 ILE B 284 GLU B 290 1 7 HELIX 32 AD5 GLN B 298 GLY B 314 1 17 HELIX 33 AD6 LEU B 315 LYS B 318 5 4 HELIX 34 AD7 PHE B 319 GLU B 331 1 13 HELIX 35 AD8 PRO B 334 PHE B 338 5 5 HELIX 36 AD9 ILE B 339 GLN B 343 5 5 HELIX 37 AE1 HIS B 345 MET B 349 5 5 SHEET 1 AA1 8 VAL A 73 VAL A 76 0 SHEET 2 AA1 8 PHE A 32 TRP A 39 1 N VAL A 36 O VAL A 74 SHEET 3 AA1 8 LYS A 4 VAL A 9 1 N ILE A 8 O THR A 37 SHEET 4 AA1 8 ILE A 88 PHE A 91 1 O ILE A 90 N VAL A 9 SHEET 5 AA1 8 THR A 114 SER A 117 1 O THR A 114 N LEU A 89 SHEET 6 AA1 8 MET A 144 MET A 148 1 O SER A 145 N SER A 117 SHEET 7 AA1 8 CYS A 162 GLY A 167 -1 O GLY A 167 N VAL A 146 SHEET 8 AA1 8 PHE A 186 VAL A 191 1 O VAL A 191 N ILE A 166 SHEET 1 AA2 2 ASP A 44 ILE A 45 0 SHEET 2 AA2 2 LYS A 48 LYS A 49 -1 O LYS A 48 N ILE A 45 SHEET 1 AA3 2 ASP A 123 GLY A 125 0 SHEET 2 AA3 2 GLY A 128 LYS A 130 -1 O LYS A 130 N ASP A 123 SHEET 1 AA4 8 VAL B 73 VAL B 76 0 SHEET 2 AA4 8 VAL B 36 TRP B 39 1 N VAL B 36 O VAL B 74 SHEET 3 AA4 8 VAL B 6 VAL B 9 1 N ILE B 8 O THR B 37 SHEET 4 AA4 8 ILE B 88 PHE B 91 1 O ILE B 90 N VAL B 9 SHEET 5 AA4 8 THR B 114 SER B 117 1 O ILE B 116 N PHE B 91 SHEET 6 AA4 8 MET B 144 MET B 148 1 O SER B 145 N SER B 117 SHEET 7 AA4 8 CYS B 162 GLY B 167 -1 O THR B 165 N MET B 148 SHEET 8 AA4 8 PHE B 186 VAL B 191 1 O THR B 189 N ILE B 166 SHEET 1 AA5 2 ASP B 44 ILE B 45 0 SHEET 2 AA5 2 LYS B 48 LYS B 49 -1 O LYS B 48 N ILE B 45 LINK O ALA B 26 K K B 402 1555 1555 2.66 LINK O ALA B 27 K K B 402 1555 1555 3.21 LINK O LEU B 29 K K B 402 1555 1555 2.69 LINK O PHE B 32 K K B 402 1555 1555 2.66 LINK K K B 402 O HOH B 526 1555 1655 2.76 LINK K K B 402 O HOH B 614 1555 1555 2.81 LINK K K B 402 O HOH B 634 1555 1555 3.24 SITE 1 AC1 19 SER A 11 GLY A 12 ASN A 13 TRP A 14 SITE 2 AC1 19 PHE A 41 VAL A 93 PRO A 94 PHE A 97 SITE 3 AC1 19 LEU A 118 ILE A 119 LYS A 120 ASN A 151 SITE 4 AC1 19 ILE A 152 ALA A 153 HOH A 502 HOH A 503 SITE 5 AC1 19 HOH A 577 HOH A 596 HOH A 641 SITE 1 AC2 4 LYS A 240 SER A 249 HOH A 505 HOH A 567 SITE 1 AC3 8 LEU A 129 LYS A 130 LEU A 131 GLU A 134 SITE 2 AC3 8 ASP A 195 PHE A 242 CYS A 243 SER A 244 SITE 1 AC4 5 GLY B 12 ASN B 13 TRP B 14 PRO B 94 SITE 2 AC4 5 HOH B 534 SITE 1 AC5 6 ALA B 26 ALA B 27 LEU B 29 PHE B 32 SITE 2 AC5 6 HOH B 526 HOH B 614 CRYST1 63.330 76.560 64.610 90.00 96.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015790 0.000000 0.001819 0.00000 SCALE2 0.000000 0.013062 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015580 0.00000