HEADER IMMUNE SYSTEM 01-AUG-19 6PZP TITLE CRYSTAL STRUCTURE OF CASPASE-1 IN COMPLEX WITH VX-765 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CASP-1, INTERLEUKIN-1 BETA CONVERTASE, IL-1BC, INTERLEUKIN-1 COMPND 5 BETA-CONVERTING ENZYME, IL-1 BETA-CONVERTING ENZYME, P45; COMPND 6 EC: 3.4.22.36; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CASPASE-1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: CASP-1, INTERLEUKIN-1 BETA CONVERTASE, IL-1BC, INTERLEUKIN-1 COMPND 12 BETA-CONVERTING ENZYME, IL-1 BETA-CONVERTING ENZYME, P45; COMPND 13 EC: 3.4.22.36; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CASP1, IL1BC, IL1BCE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CASP1, IL1BC, IL1BCE; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, COMPLEX, INHIBITOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.YANG,Z.LIU,T.S.XIAO REVDAT 2 11-OCT-23 6PZP 1 REMARK REVDAT 1 05-AUG-20 6PZP 0 JRNL AUTH J.YANG,Z.LIU,T.S.XIAO JRNL TITL CRYSTAL STRUCTURE OF CASPASE-1 IN COMPLEX WITH VX-765 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8850 - 4.6585 1.00 1872 159 0.1694 0.2135 REMARK 3 2 4.6585 - 3.7000 1.00 1740 148 0.1344 0.1853 REMARK 3 3 3.7000 - 3.2330 1.00 1717 145 0.1548 0.1760 REMARK 3 4 3.2330 - 2.9377 1.00 1713 145 0.1743 0.2130 REMARK 3 5 2.9377 - 2.7273 1.00 1665 143 0.1733 0.2264 REMARK 3 6 2.7273 - 2.5666 1.00 1692 143 0.1804 0.2155 REMARK 3 7 2.5666 - 2.4382 1.00 1667 142 0.1779 0.1996 REMARK 3 8 2.4382 - 2.3321 1.00 1684 143 0.1788 0.2084 REMARK 3 9 2.3321 - 2.2423 1.00 1658 140 0.1758 0.2270 REMARK 3 10 2.2423 - 2.1650 1.00 1665 142 0.1798 0.2162 REMARK 3 11 2.1650 - 2.0973 1.00 1644 139 0.1838 0.2552 REMARK 3 12 2.0973 - 2.0374 1.00 1640 140 0.2075 0.2394 REMARK 3 13 2.0374 - 1.9838 1.00 1652 139 0.2208 0.2904 REMARK 3 14 1.9838 - 1.9400 0.92 1529 130 0.2743 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2158 REMARK 3 ANGLE : 0.842 2910 REMARK 3 CHIRALITY : 0.055 320 REMARK 3 PLANARITY : 0.005 373 REMARK 3 DIHEDRAL : 4.789 1658 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5092 -49.8720 -9.5846 REMARK 3 T TENSOR REMARK 3 T11: 0.5654 T22: 0.2487 REMARK 3 T33: 0.4945 T12: -0.0221 REMARK 3 T13: 0.1660 T23: -0.1114 REMARK 3 L TENSOR REMARK 3 L11: 1.0504 L22: 0.1754 REMARK 3 L33: 0.4631 L12: -0.1518 REMARK 3 L13: 0.6517 L23: -0.2454 REMARK 3 S TENSOR REMARK 3 S11: -0.2977 S12: 0.6791 S13: -0.8357 REMARK 3 S21: -0.0519 S22: 0.0251 S23: 0.2523 REMARK 3 S31: 0.7584 S32: 0.3421 S33: -0.0063 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5815 -39.7780 -10.1734 REMARK 3 T TENSOR REMARK 3 T11: 0.3842 T22: 0.8030 REMARK 3 T33: 1.2290 T12: -0.3825 REMARK 3 T13: -0.0066 T23: -0.1809 REMARK 3 L TENSOR REMARK 3 L11: 1.4371 L22: 0.6228 REMARK 3 L33: 1.9360 L12: 0.7732 REMARK 3 L13: -0.6028 L23: -0.3448 REMARK 3 S TENSOR REMARK 3 S11: 0.3370 S12: -0.2716 S13: -0.7176 REMARK 3 S21: -0.1334 S22: 0.3402 S23: 1.2753 REMARK 3 S31: -0.5786 S32: -1.3007 S33: 0.1779 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3224 -36.9039 -19.8362 REMARK 3 T TENSOR REMARK 3 T11: 0.3623 T22: 0.4747 REMARK 3 T33: 0.2931 T12: -0.0479 REMARK 3 T13: -0.0049 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 0.0165 L22: 0.1893 REMARK 3 L33: 0.0504 L12: -0.0027 REMARK 3 L13: -0.1441 L23: -0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.3022 S12: 0.6401 S13: 0.2078 REMARK 3 S21: -0.3998 S22: -0.1611 S23: 0.0931 REMARK 3 S31: 0.0640 S32: -0.5213 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2794 -30.8492 -5.4297 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.5045 REMARK 3 T33: 0.4858 T12: 0.0798 REMARK 3 T13: 0.0182 T23: -0.1254 REMARK 3 L TENSOR REMARK 3 L11: 0.5285 L22: 0.2368 REMARK 3 L33: 1.2796 L12: -0.2164 REMARK 3 L13: 0.3907 L23: 0.2622 REMARK 3 S TENSOR REMARK 3 S11: 0.5269 S12: 0.2170 S13: 0.2118 REMARK 3 S21: -0.2151 S22: 0.0126 S23: -0.3836 REMARK 3 S31: 0.9384 S32: 0.5410 S33: 0.0996 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5079 -30.5246 -12.4451 REMARK 3 T TENSOR REMARK 3 T11: 0.2857 T22: 0.3916 REMARK 3 T33: 0.3307 T12: -0.0196 REMARK 3 T13: 0.0376 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.7184 L22: 0.8131 REMARK 3 L33: 1.4954 L12: -0.3386 REMARK 3 L13: -0.6994 L23: 0.4135 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.1148 S13: 0.0596 REMARK 3 S21: -0.0216 S22: 0.0015 S23: -0.1077 REMARK 3 S31: 0.1283 S32: 0.3972 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3966 -20.9364 -10.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.3551 REMARK 3 T33: 0.3614 T12: -0.0660 REMARK 3 T13: 0.0384 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.6204 L22: 0.2007 REMARK 3 L33: 0.9443 L12: -0.1531 REMARK 3 L13: -0.5886 L23: 0.5586 REMARK 3 S TENSOR REMARK 3 S11: 0.1719 S12: -0.0331 S13: 0.1585 REMARK 3 S21: -0.1286 S22: -0.0124 S23: -0.1334 REMARK 3 S31: -0.2027 S32: 0.1270 S33: -0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2176 -25.3187 16.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.4637 REMARK 3 T33: 0.3873 T12: -0.0639 REMARK 3 T13: -0.0353 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.3624 L22: 0.3146 REMARK 3 L33: 0.3252 L12: -0.2965 REMARK 3 L13: 0.2683 L23: 0.2916 REMARK 3 S TENSOR REMARK 3 S11: 0.1531 S12: -0.3715 S13: 0.0171 REMARK 3 S21: 0.0910 S22: -0.0228 S23: 0.0408 REMARK 3 S31: -0.0759 S32: 0.6891 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 317 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9470 -17.4838 -16.5767 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.3955 REMARK 3 T33: 0.2771 T12: -0.0484 REMARK 3 T13: 0.0313 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: -0.0262 L22: 0.0949 REMARK 3 L33: 0.0305 L12: 0.0486 REMARK 3 L13: -0.0465 L23: -0.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.0980 S12: 0.2614 S13: -0.0209 REMARK 3 S21: 0.0902 S22: 0.1259 S23: -0.1053 REMARK 3 S31: -0.0903 S32: 0.0208 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 329 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3292 -31.0675 5.2043 REMARK 3 T TENSOR REMARK 3 T11: 0.3976 T22: 0.3900 REMARK 3 T33: 0.3475 T12: 0.0371 REMARK 3 T13: -0.0558 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.5487 L22: 0.1927 REMARK 3 L33: 0.3392 L12: 0.4579 REMARK 3 L13: -0.5856 L23: -0.3910 REMARK 3 S TENSOR REMARK 3 S11: 0.0836 S12: -0.0591 S13: 0.0464 REMARK 3 S21: 0.2263 S22: -0.0590 S23: -0.0335 REMARK 3 S31: 0.2169 S32: 0.3639 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 348 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3765 -40.0215 0.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.4700 T22: 0.2935 REMARK 3 T33: 0.3268 T12: 0.0054 REMARK 3 T13: 0.0700 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.0724 L22: 0.0181 REMARK 3 L33: 0.0394 L12: -0.1315 REMARK 3 L13: 0.0509 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: -0.2762 S12: -0.1538 S13: 0.0023 REMARK 3 S21: 0.4555 S22: 0.0777 S23: 0.2861 REMARK 3 S31: 0.3234 S32: 0.1134 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 361 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5516 -35.3493 1.7119 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.2890 REMARK 3 T33: 0.3245 T12: -0.0470 REMARK 3 T13: 0.0776 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.0622 L22: 0.0169 REMARK 3 L33: 0.3708 L12: -0.2146 REMARK 3 L13: -0.2761 L23: 0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.2192 S12: 0.2470 S13: 0.0718 REMARK 3 S21: 0.4381 S22: -0.0176 S23: 0.1523 REMARK 3 S31: 0.2161 S32: 0.1928 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3553 -30.8127 10.1755 REMARK 3 T TENSOR REMARK 3 T11: 0.4266 T22: 0.3310 REMARK 3 T33: 0.3616 T12: 0.0449 REMARK 3 T13: -0.0239 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.3295 L22: -0.0330 REMARK 3 L33: 0.1825 L12: -0.0047 REMARK 3 L13: -0.0566 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: -0.0177 S13: -0.3776 REMARK 3 S21: -0.0858 S22: 0.1693 S23: 0.2417 REMARK 3 S31: 0.6403 S32: 0.1431 S33: 0.0077 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 391 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8797 -32.2831 -9.7677 REMARK 3 T TENSOR REMARK 3 T11: 0.3146 T22: 0.3059 REMARK 3 T33: 0.3198 T12: -0.0530 REMARK 3 T13: 0.0412 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.1277 L22: 0.0865 REMARK 3 L33: 0.5149 L12: -0.2518 REMARK 3 L13: -0.0602 L23: -0.1007 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0050 S13: 0.0800 REMARK 3 S21: -0.7370 S22: -0.1297 S23: -0.0062 REMARK 3 S31: -0.0025 S32: -0.1830 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25637 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.935 REMARK 200 RESOLUTION RANGE LOW (A) : 28.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.19700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6BZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 20% W/V PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.05350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.80250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.58025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.80250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.52675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.80250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.80250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.58025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.80250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.80250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.52675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.05350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 503 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 120 REMARK 465 PRO A 121 REMARK 465 ALA A 122 REMARK 465 MET A 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 368 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 476 O HOH A 496 1.89 REMARK 500 O HOH A 403 O HOH A 417 2.04 REMARK 500 SD MET B 386 O HOH B 549 2.06 REMARK 500 O HOH B 540 O HOH B 547 2.07 REMARK 500 OG SER A 175 O HOH A 401 2.10 REMARK 500 OD2 ASP A 288 O HOH A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 403 O HOH B 548 5444 1.94 REMARK 500 O HOH A 472 O HOH A 481 5444 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 229 164.60 178.30 REMARK 500 ALA A 284 139.41 -173.86 REMARK 500 ASP B 336 -5.39 80.72 REMARK 500 ASP B 381 37.95 -146.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P7S A 301 DBREF 6PZP A 120 297 UNP P29466 CASP1_HUMAN 120 297 DBREF 6PZP B 317 404 UNP P29466 CASP1_HUMAN 317 404 SEQRES 1 A 178 ASN PRO ALA MET PRO THR SER SER GLY SER GLU GLY ASN SEQRES 2 A 178 VAL LYS LEU CYS SER LEU GLU GLU ALA GLN ARG ILE TRP SEQRES 3 A 178 LYS GLN LYS SER ALA GLU ILE TYR PRO ILE MET ASP LYS SEQRES 4 A 178 SER SER ARG THR ARG LEU ALA LEU ILE ILE CYS ASN GLU SEQRES 5 A 178 GLU PHE ASP SER ILE PRO ARG ARG THR GLY ALA GLU VAL SEQRES 6 A 178 ASP ILE THR GLY MET THR MET LEU LEU GLN ASN LEU GLY SEQRES 7 A 178 TYR SER VAL ASP VAL LYS LYS ASN LEU THR ALA SER ASP SEQRES 8 A 178 MET THR THR GLU LEU GLU ALA PHE ALA HIS ARG PRO GLU SEQRES 9 A 178 HIS LYS THR SER ASP SER THR PHE LEU VAL PHE MET SER SEQRES 10 A 178 HIS GLY ILE ARG GLU GLY ILE CYS GLY LYS LYS HIS SER SEQRES 11 A 178 GLU GLN VAL PRO ASP ILE LEU GLN LEU ASN ALA ILE PHE SEQRES 12 A 178 ASN MET LEU ASN THR LYS ASN CYS PRO SER LEU LYS ASP SEQRES 13 A 178 LYS PRO LYS VAL ILE ILE ILE GLN ALA CYS ARG GLY ASP SEQRES 14 A 178 SER PRO GLY VAL VAL TRP PHE LYS ASP SEQRES 1 B 88 ALA ILE LYS LYS ALA HIS ILE GLU LYS ASP PHE ILE ALA SEQRES 2 B 88 PHE CYS SER SER THR PRO ASP ASN VAL SER TRP ARG HIS SEQRES 3 B 88 PRO THR MET GLY SER VAL PHE ILE GLY ARG LEU ILE GLU SEQRES 4 B 88 HIS MET GLN GLU TYR ALA CYS SER CYS ASP VAL GLU GLU SEQRES 5 B 88 ILE PHE ARG LYS VAL ARG PHE SER PHE GLU GLN PRO ASP SEQRES 6 B 88 GLY ARG ALA GLN MET PRO THR THR GLU ARG VAL THR LEU SEQRES 7 B 88 THR ARG CYS PHE TYR LEU PHE PRO GLY HIS HET P7S A 301 33 HETNAM P7S N-(4-AMINO-3-CHLOROBENZENE-1-CARBONYL)-3-METHYL-L- HETNAM 2 P7S VALYL-N-[(2S)-1-CARBOXY-3-OXOPROPAN-2-YL]-L- HETNAM 3 P7S PROLINAMIDE FORMUL 3 P7S C22 H29 CL N4 O6 FORMUL 4 HOH *156(H2 O) HELIX 1 AA1 SER A 137 LYS A 148 1 12 HELIX 2 AA2 SER A 149 ILE A 152 5 4 HELIX 3 AA3 GLY A 181 LEU A 196 1 16 HELIX 4 AA4 THR A 207 HIS A 220 1 14 HELIX 5 AA5 ARG A 221 SER A 227 5 7 HELIX 6 AA6 GLN A 257 ASN A 266 1 10 HELIX 7 AA7 CYS A 270 LYS A 274 5 5 HELIX 8 AA8 VAL B 348 ALA B 361 1 14 HELIX 9 AA9 ASP B 365 PHE B 377 1 13 SHEET 1 AA1 6 SER A 199 LYS A 204 0 SHEET 2 AA1 6 LEU A 164 CYS A 169 1 N ILE A 167 O ASP A 201 SHEET 3 AA1 6 THR A 230 MET A 235 1 O VAL A 233 N ILE A 168 SHEET 4 AA1 6 LYS A 278 GLN A 283 1 O VAL A 279 N LEU A 232 SHEET 5 AA1 6 PHE B 327 CYS B 331 1 O ILE B 328 N ILE A 280 SHEET 6 AA1 6 THR B 388 GLU B 390 -1 O THR B 388 N CYS B 331 SHEET 1 AA2 3 GLY A 238 ILE A 239 0 SHEET 2 AA2 3 GLY A 242 CYS A 244 -1 O GLY A 242 N ILE A 239 SHEET 3 AA2 3 ILE A 255 LEU A 256 -1 O LEU A 256 N ILE A 243 SHEET 1 AA3 2 ARG B 341 HIS B 342 0 SHEET 2 AA3 2 GLY B 346 SER B 347 -1 O GLY B 346 N HIS B 342 LINK SG CYS A 285 C21 P7S A 301 1555 1555 1.77 SITE 1 AC1 11 ARG A 179 HIS A 237 GLY A 238 GLN A 283 SITE 2 AC1 11 CYS A 285 SER B 339 TRP B 340 ARG B 341 SITE 3 AC1 11 HIS B 342 VAL B 348 ARG B 383 CRYST1 63.605 63.605 162.107 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015722 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006169 0.00000