HEADER HYDROLASE/HYDROLASE INHIBITOR 01-AUG-19 6PZR TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 2 COMPLEXED WITH RESMINOSTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HDAC6 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN 2 (UNP RESIDUES 289-646); COMPND 5 SYNONYM: HISTONE DEACETYLASE 6; COMPND 6 EC: 3.5.1.98; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE DEACETYLASE, METALLOHYDROLASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.OSKO,D.W.CHRISTIANSON REVDAT 2 11-OCT-23 6PZR 1 LINK REVDAT 1 05-FEB-20 6PZR 0 JRNL AUTH J.D.OSKO,N.J.PORTER,P.A.NARAYANA REDDY,Y.C.XIAO,J.ROKKA, JRNL AUTH 2 M.JUNG,J.M.HOOKER,J.M.SALVINO,D.W.CHRISTIANSON JRNL TITL EXPLORING STRUCTURAL DETERMINANTS OF INHIBITOR AFFINITY AND JRNL TITL 2 SELECTIVITY IN COMPLEXES WITH HISTONE DEACETYLASE 6. JRNL REF J.MED.CHEM. V. 63 295 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 31793776 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01540 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 3216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1000243361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 68.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.36100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.29800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5EEM REMARK 200 REMARK 200 REMARK: THICK PLATE-LIKE CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML ZCD2 PROTEIN, 2 MM REMARK 280 RESMINOSTAT INHIBITOR, 0.2 M POTASSIUM IODIDE, 20% W/V PEG3350, REMARK 280 1:1 RATIO PROTEIN TO PRECIPITANT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.94150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.82100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.82100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.94150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 798 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 497 CD OE1 OE2 REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 470 LYS A 518 CG CD CE NZ REMARK 470 ARG A 520 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 577 NZ REMARK 470 ASP A 578 OD1 OD2 REMARK 470 GLU A 602 CD OE1 OE2 REMARK 470 ARG A 660 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 672 CG CD CE NZ REMARK 470 LEU A 769 CD1 CD2 REMARK 470 HIS A 771 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 772 CG CD1 CD2 REMARK 470 ILE B 443 CD1 REMARK 470 LYS B 518 CG CD CE NZ REMARK 470 GLU B 528 CD OE1 OE2 REMARK 470 GLU B 602 CG CD OE1 OE2 REMARK 470 ARG B 660 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 672 CE NZ REMARK 470 LYS B 776 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 531 74.85 60.75 REMARK 500 THR A 600 -101.91 -130.36 REMARK 500 TYR A 637 -55.20 -123.79 REMARK 500 PRO A 644 32.86 -92.28 REMARK 500 LEU A 685 -59.95 -120.13 REMARK 500 ALA A 694 73.72 47.48 REMARK 500 GLU A 742 -115.36 -114.77 REMARK 500 ASP A 770 -114.70 -67.82 REMARK 500 SER B 531 74.11 66.90 REMARK 500 PRO B 571 -179.12 -69.08 REMARK 500 THR B 600 -92.39 -131.43 REMARK 500 LEU B 685 -62.16 -122.63 REMARK 500 ALA B 694 72.68 54.04 REMARK 500 GLN B 716 43.69 -140.20 REMARK 500 GLU B 742 -123.70 -119.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 66.0 REMARK 620 3 ASP A 612 O 97.4 98.0 REMARK 620 4 HIS A 614 O 166.6 101.1 80.6 REMARK 620 5 SER A 633 OG 77.1 104.9 151.4 110.8 REMARK 620 6 LEU A 634 O 74.7 136.5 68.6 116.2 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 98.1 REMARK 620 3 ASP A 705 OD2 101.0 108.1 REMARK 620 4 P7D A 804 N22 108.5 96.5 138.2 REMARK 620 5 P7D A 804 O21 153.0 105.1 84.7 56.0 REMARK 620 6 P7D A 804 O23 83.3 124.7 126.0 35.0 72.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 72.8 REMARK 620 3 VAL A 629 O 116.8 77.2 REMARK 620 4 TYR A 662 O 158.5 115.7 84.7 REMARK 620 5 HOH A 931 O 69.5 141.9 124.9 98.3 REMARK 620 6 HOH A 940 O 81.9 84.9 148.0 79.4 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 610 O REMARK 620 2 ASP B 610 OD2 69.3 REMARK 620 3 ASP B 612 O 99.3 97.7 REMARK 620 4 HIS B 614 O 166.0 96.9 79.6 REMARK 620 5 SER B 633 OG 80.7 110.7 149.3 107.5 REMARK 620 6 LEU B 634 O 73.6 135.9 65.5 117.7 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 612 OD1 REMARK 620 2 HIS B 614 ND1 101.6 REMARK 620 3 ASP B 705 OD2 97.2 98.6 REMARK 620 4 P7D B 804 N22 121.6 90.3 137.6 REMARK 620 5 P7D B 804 O21 163.0 95.2 82.2 55.6 REMARK 620 6 P7D B 804 O23 92.7 112.0 145.2 32.4 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 623 O REMARK 620 2 ASP B 626 O 75.0 REMARK 620 3 VAL B 629 O 115.4 80.3 REMARK 620 4 TYR B 662 O 153.9 115.8 90.4 REMARK 620 5 HOH B 914 O 64.7 139.2 122.0 99.0 REMARK 620 6 HOH B 950 O 80.5 88.8 157.1 76.3 79.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P7D A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P7D B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 810 DBREF 6PZR A 441 798 UNP A7YT55 A7YT55_DANRE 289 646 DBREF 6PZR B 441 798 UNP A7YT55 A7YT55_DANRE 289 646 SEQRES 1 A 358 SER PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET MET SEQRES 2 A 358 LEU HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU LEU SEQRES 3 A 358 PRO GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU GLU SEQRES 4 A 358 LEU ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA ARG SEQRES 5 A 358 LEU ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SER SEQRES 6 A 358 LYS HIS ILE SER ILE ILE LYS SER SER GLU HIS MET LYS SEQRES 7 A 358 PRO ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SER SEQRES 8 A 358 ILE PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU LEU SEQRES 9 A 358 ALA ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE LEU SEQRES 10 A 358 THR GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG PRO SEQRES 11 A 358 PRO GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY PHE SEQRES 12 A 358 CYS PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR ALA SEQRES 13 A 358 GLN SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE VAL SEQRES 14 A 358 ASP TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS ILE SEQRES 15 A 358 PHE GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU HIS SEQRES 16 A 358 ARG TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU ASP SEQRES 17 A 358 ALA ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG GLY SEQRES 18 A 358 TYR ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET GLY SEQRES 19 A 358 ASP PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL MET SEQRES 20 A 358 PRO ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU VAL SEQRES 21 A 358 SER ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU GLY SEQRES 22 A 358 GLY PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU THR SEQRES 23 A 358 HIS GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU ILE SEQRES 24 A 358 ILE LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER GLU SEQRES 25 A 358 SER MET SER MET CYS THR SER MET LEU LEU GLY ASP SER SEQRES 26 A 358 PRO PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SER SEQRES 27 A 358 ALA THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS ALA SEQRES 28 A 358 PRO PHE TRP SER SER LEU ARG SEQRES 1 B 358 SER PRO ILE THR GLY LEU VAL TYR ASP GLN ARG MET MET SEQRES 2 B 358 LEU HIS HIS ASN MET TRP ASP SER HIS HIS PRO GLU LEU SEQRES 3 B 358 PRO GLN ARG ILE SER ARG ILE PHE SER ARG HIS GLU GLU SEQRES 4 B 358 LEU ARG LEU LEU SER ARG CYS HIS ARG ILE PRO ALA ARG SEQRES 5 B 358 LEU ALA THR GLU GLU GLU LEU ALA LEU CYS HIS SER SER SEQRES 6 B 358 LYS HIS ILE SER ILE ILE LYS SER SER GLU HIS MET LYS SEQRES 7 B 358 PRO ARG ASP LEU ASN ARG LEU GLY ASP GLU TYR ASN SER SEQRES 8 B 358 ILE PHE ILE SER ASN GLU SER TYR THR CYS ALA LEU LEU SEQRES 9 B 358 ALA ALA GLY SER CYS PHE ASN SER ALA GLN ALA ILE LEU SEQRES 10 B 358 THR GLY GLN VAL ARG ASN ALA VAL ALA ILE VAL ARG PRO SEQRES 11 B 358 PRO GLY HIS HIS ALA GLU LYS ASP THR ALA CYS GLY PHE SEQRES 12 B 358 CYS PHE PHE ASN THR ALA ALA LEU THR ALA ARG TYR ALA SEQRES 13 B 358 GLN SER ILE THR ARG GLU SER LEU ARG VAL LEU ILE VAL SEQRES 14 B 358 ASP TRP ASP VAL HIS HIS GLY ASN GLY THR GLN HIS ILE SEQRES 15 B 358 PHE GLU GLU ASP ASP SER VAL LEU TYR ILE SER LEU HIS SEQRES 16 B 358 ARG TYR GLU ASP GLY ALA PHE PHE PRO ASN SER GLU ASP SEQRES 17 B 358 ALA ASN TYR ASP LYS VAL GLY LEU GLY LYS GLY ARG GLY SEQRES 18 B 358 TYR ASN VAL ASN ILE PRO TRP ASN GLY GLY LYS MET GLY SEQRES 19 B 358 ASP PRO GLU TYR MET ALA ALA PHE HIS HIS LEU VAL MET SEQRES 20 B 358 PRO ILE ALA ARG GLU PHE ALA PRO GLU LEU VAL LEU VAL SEQRES 21 B 358 SER ALA GLY PHE ASP ALA ALA ARG GLY ASP PRO LEU GLY SEQRES 22 B 358 GLY PHE GLN VAL THR PRO GLU GLY TYR ALA HIS LEU THR SEQRES 23 B 358 HIS GLN LEU MET SER LEU ALA ALA GLY ARG VAL LEU ILE SEQRES 24 B 358 ILE LEU GLU GLY GLY TYR ASN LEU THR SER ILE SER GLU SEQRES 25 B 358 SER MET SER MET CYS THR SER MET LEU LEU GLY ASP SER SEQRES 26 B 358 PRO PRO SER LEU ASP HIS LEU THR PRO LEU LYS THR SER SEQRES 27 B 358 ALA THR VAL SER ILE ASN ASN VAL LEU ARG ALA HIS ALA SEQRES 28 B 358 PRO PHE TRP SER SER LEU ARG HET ZN A 801 1 HET K A 802 1 HET K A 803 1 HET P7D A 804 24 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET IOD A 808 1 HET IOD A 809 1 HET IOD A 810 1 HET IOD A 811 1 HET ZN B 801 1 HET K B 802 1 HET K B 803 1 HET P7D B 804 24 HET EDO B 805 4 HET EDO B 806 4 HET EDO B 807 4 HET IOD B 808 1 HET IOD B 809 1 HET IOD B 810 1 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM P7D RESMINOSTAT HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN P7D (2E)-3-[1-({4-[(DIMETHYLAMINO)METHYL]PHENYL}SULFONYL)- HETSYN 2 P7D 1H-PYRROL-3-YL]-N-HYDROXYPROP-2-ENAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 K 4(K 1+) FORMUL 6 P7D 2(C16 H19 N3 O4 S) FORMUL 7 EDO 6(C2 H6 O2) FORMUL 10 IOD 7(I 1-) FORMUL 24 HOH *157(H2 O) HELIX 1 AA1 ASP A 449 HIS A 455 5 7 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 514 1 11 HELIX 6 AA6 GLU A 515 MET A 517 5 3 HELIX 7 AA7 LYS A 518 GLU A 528 1 11 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 ILE A 599 1 13 HELIX 10 AB1 GLY A 616 GLU A 624 1 9 HELIX 11 AB2 SER A 646 ASN A 650 5 5 HELIX 12 AB3 LEU A 656 ARG A 660 5 5 HELIX 13 AB4 GLY A 674 LEU A 685 1 12 HELIX 14 AB5 LEU A 685 ALA A 694 1 10 HELIX 15 AB6 THR A 718 MET A 730 1 13 HELIX 16 AB7 SER A 731 GLY A 735 5 5 HELIX 17 AB8 ASN A 746 LEU A 762 1 17 HELIX 18 AB9 LYS A 776 ALA A 791 1 16 HELIX 19 AC1 ASP B 449 HIS B 455 5 7 HELIX 20 AC2 PRO B 467 LEU B 480 1 14 HELIX 21 AC3 LEU B 482 CYS B 486 5 5 HELIX 22 AC4 THR B 495 ALA B 500 1 6 HELIX 23 AC5 SER B 504 SER B 514 1 11 HELIX 24 AC6 GLU B 515 MET B 517 5 3 HELIX 25 AC7 LYS B 518 GLU B 528 1 11 HELIX 26 AC8 GLU B 537 THR B 558 1 22 HELIX 27 AC9 ASN B 587 ILE B 599 1 13 HELIX 28 AD1 GLY B 616 PHE B 623 1 8 HELIX 29 AD2 SER B 646 ASN B 650 5 5 HELIX 30 AD3 LEU B 656 ARG B 660 5 5 HELIX 31 AD4 GLY B 674 LEU B 685 1 12 HELIX 32 AD5 LEU B 685 ALA B 694 1 10 HELIX 33 AD6 THR B 718 MET B 730 1 13 HELIX 34 AD7 SER B 731 GLY B 735 5 5 HELIX 35 AD8 ASN B 746 LEU B 762 1 17 HELIX 36 AD9 LYS B 776 ALA B 791 1 16 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 VAL A 447 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ALA A 566 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N ALA A 702 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O LEU A 630 N ILE A 608 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 SHEET 1 AA2 8 HIS B 487 ARG B 488 0 SHEET 2 AA2 8 THR B 444 VAL B 447 1 N THR B 444 O HIS B 487 SHEET 3 AA2 8 ASN B 563 ALA B 566 1 O ASN B 563 N GLY B 445 SHEET 4 AA2 8 VAL B 737 LEU B 741 1 O ILE B 739 N ALA B 566 SHEET 5 AA2 8 LEU B 697 ALA B 702 1 N ALA B 702 O ILE B 740 SHEET 6 AA2 8 VAL B 606 ASP B 610 1 N LEU B 607 O LEU B 699 SHEET 7 AA2 8 VAL B 629 ARG B 636 1 O ILE B 632 N ILE B 608 SHEET 8 AA2 8 ASN B 663 TRP B 668 1 O VAL B 664 N TYR B 631 LINK O ASP A 610 K K A 802 1555 1555 2.98 LINK OD1 ASP A 610 K K A 802 1555 1555 2.64 LINK OD1 ASP A 612 ZN ZN A 801 1555 1555 2.19 LINK O ASP A 612 K K A 802 1555 1555 2.65 LINK ND1 HIS A 614 ZN ZN A 801 1555 1555 2.21 LINK O HIS A 614 K K A 802 1555 1555 2.70 LINK O PHE A 623 K K A 803 1555 1555 2.72 LINK O ASP A 626 K K A 803 1555 1555 2.99 LINK O VAL A 629 K K A 803 1555 1555 2.81 LINK OG SER A 633 K K A 802 1555 1555 2.81 LINK O LEU A 634 K K A 802 1555 1555 2.61 LINK O TYR A 662 K K A 803 1555 1555 2.93 LINK OD2 ASP A 705 ZN ZN A 801 1555 1555 1.99 LINK ZN ZN A 801 N22 P7D A 804 1555 1555 2.38 LINK ZN ZN A 801 O21 P7D A 804 1555 1555 2.26 LINK ZN ZN A 801 O23 P7D A 804 1555 1555 1.85 LINK K K A 803 O HOH A 931 1555 1555 3.22 LINK K K A 803 O HOH A 940 1555 1555 2.67 LINK O ASP B 610 K K B 802 1555 1555 3.01 LINK OD2 ASP B 610 K K B 802 1555 1555 2.94 LINK OD1 ASP B 612 ZN ZN B 801 1555 1555 2.04 LINK O ASP B 612 K K B 802 1555 1555 2.62 LINK ND1 HIS B 614 ZN ZN B 801 1555 1555 2.25 LINK O HIS B 614 K K B 802 1555 1555 2.66 LINK O PHE B 623 K K B 803 1555 1555 2.74 LINK O ASP B 626 K K B 803 1555 1555 3.07 LINK O VAL B 629 K K B 803 1555 1555 2.70 LINK OG SER B 633 K K B 802 1555 1555 3.02 LINK O LEU B 634 K K B 802 1555 1555 2.80 LINK O TYR B 662 K K B 803 1555 1555 2.63 LINK OD2 ASP B 705 ZN ZN B 801 1555 1555 2.12 LINK ZN ZN B 801 N22 P7D B 804 1555 1555 2.53 LINK ZN ZN B 801 O21 P7D B 804 1555 1555 2.09 LINK ZN ZN B 801 O23 P7D B 804 1555 1555 1.82 LINK K K B 803 O HOH B 914 1555 1555 3.46 LINK K K B 803 O HOH B 950 1555 1555 2.74 CISPEP 1 ARG A 569 PRO A 570 0 -4.42 CISPEP 2 PHE A 643 PRO A 644 0 6.70 CISPEP 3 ARG B 569 PRO B 570 0 -3.17 CISPEP 4 PHE B 643 PRO B 644 0 4.47 SITE 1 AC1 4 ASP A 612 HIS A 614 ASP A 705 P7D A 804 SITE 1 AC2 5 ASP A 610 ASP A 612 HIS A 614 SER A 633 SITE 2 AC2 5 LEU A 634 SITE 1 AC3 5 PHE A 623 ASP A 626 VAL A 629 TYR A 662 SITE 2 AC3 5 HOH A 940 SITE 1 AC4 12 SER A 531 HIS A 573 HIS A 574 PHE A 583 SITE 2 AC4 12 ASP A 612 HIS A 614 ASN A 645 ASP A 705 SITE 3 AC4 12 GLY A 743 TYR A 745 ZN A 801 ASP B 627 SITE 1 AC5 2 ARG A 691 HIS A 727 SITE 1 AC6 3 TYR A 448 GLN A 450 ARG A 488 SITE 1 AC7 5 ALA A 791 TRP A 794 SER A 795 LEU A 797 SITE 2 AC7 5 ASN B 523 SITE 1 AC8 1 ARG A 520 SITE 1 AC9 4 ASP B 612 HIS B 614 ASP B 705 P7D B 804 SITE 1 AD1 5 ASP B 610 ASP B 612 HIS B 614 SER B 633 SITE 2 AD1 5 LEU B 634 SITE 1 AD2 5 PHE B 623 ASP B 626 VAL B 629 TYR B 662 SITE 2 AD2 5 HOH B 950 SITE 1 AD3 11 SER B 531 HIS B 573 HIS B 574 PHE B 583 SITE 2 AD3 11 ASP B 612 HIS B 614 PHE B 643 ASN B 645 SITE 3 AD3 11 ASP B 705 TYR B 745 ZN B 801 SITE 1 AD4 6 GLU B 624 ASP B 652 LYS B 653 VAL B 654 SITE 2 AD4 6 GLY B 655 LEU B 656 SITE 1 AD5 2 GLY B 709 PHE B 715 SITE 1 AD6 4 TYR B 448 ASP B 449 GLN B 450 ARG B 488 SITE 1 AD7 1 HIS B 614 SITE 1 AD8 1 ALA B 733 CRYST1 75.883 97.364 97.642 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010241 0.00000