HEADER BIOSYNTHETIC PROTEIN 03-DEC-18 6Q32 TITLE THE STRUCTURE OF THE MO-INSERTASE DOMAIN CNX1E (VARIANT S269DD274S) TITLE 2 FROM ARABIDOPSIS THALIANA IN COMPLEX WITH MOCO-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN CNX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLYBDENUM COFACTOR BIOSYNTHESIS ENZYME CNX1; COMPND 5 EC: 2.10.1.1,2.7.7.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CNX1, AT5G20990, F22D1.6, T10F18.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RK5206; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGPLUS-CNX1E KEYWDS MOLYBDENUM COFACTOR, MOCO BIOSYNTHESIS, MO INSERTASE, MOCO-AMP, KEYWDS 2 ACCUMULATING VARIANT, MOLYBDATE BINDING, HYDROLASE, BIOSYNTHETIC KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.KRAUSZE REVDAT 3 24-JAN-24 6Q32 1 REMARK REVDAT 2 01-SEP-21 6Q32 1 JRNL REVDAT 1 17-FEB-21 6Q32 0 JRNL AUTH C.PROBST,J.YANG,J.KRAUSZE,T.W.HERCHER,C.P.RICHERS,T.SPATZAL, JRNL AUTH 2 K.KC,L.J.GILES,D.C.REES,R.R.MENDEL,M.L.KIRK,T.KRUSE JRNL TITL MECHANISM OF MOLYBDATE INSERTION INTO PTERIN-BASED JRNL TITL 2 MOLYBDENUM COFACTORS. JRNL REF NAT.CHEM. V. 13 758 2021 JRNL REFN ESSN 1755-4349 JRNL PMID 34183818 JRNL DOI 10.1038/S41557-021-00714-1 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.6 REMARK 3 NUMBER OF REFLECTIONS : 80115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3902 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.24 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 564 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2869 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 546 REMARK 3 BIN R VALUE (WORKING SET) : 0.2877 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.19 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04340 REMARK 3 B22 (A**2) : 0.94610 REMARK 3 B33 (A**2) : 0.09730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.170 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.061 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.060 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.058 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6552 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11948 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1441 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 990 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6552 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7466 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.69 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.8853 42.2335 1.1382 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: -0.0724 REMARK 3 T33: -0.0306 T12: 0.0072 REMARK 3 T13: -0.0125 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.3401 L22: 0.3087 REMARK 3 L33: 0.9089 L12: -0.0141 REMARK 3 L13: -0.1098 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: -0.0173 S13: -0.0880 REMARK 3 S21: 0.0073 S22: -0.0515 S23: -0.0171 REMARK 3 S31: 0.1512 S32: 0.0267 S33: 0.0028 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200012883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-14; 02-OCT-14; 02-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL; SSRL REMARK 200 BEAMLINE : BL12-2; BL12-2; BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99987; 0.99987; 1.74262 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111); LIQUID NITROGEN- REMARK 200 COOLED DOUBLE CRYSTAL SI(111); REMARK 200 LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : RH COATED COLLIMATING MIRRORS, K REMARK 200 -B FOCUSING MIRRORS; RH COATED REMARK 200 COLLIMATING MIRRORS, K-B REMARK 200 FOCUSING MIRRORS; RH COATED REMARK 200 COLLIMATING MIRRORS, K-B REMARK 200 FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M; DECTRIS REMARK 200 PILATUS 6M; DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80156 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 39.267 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 2.02800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH; SINGLE REMARK 200 WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G2S REMARK 200 REMARK 200 REMARK: ISOMETRIC TETRAGONAL PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 24 % (V/V) PEG 400; REMARK 280 IN AN ANOXIC ATMOSPHERE CONTAINING A 95 % ARGON AND 5 % HYDROGEN REMARK 280 GAS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.50500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.64500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.57000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.50500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.64500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.57000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.50500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.64500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.57000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.50500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.64500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 CYS A 6 REMARK 465 CYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 THR A 14 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 THR A 132 REMARK 465 THR A 309 REMARK 465 GLU A 310 REMARK 465 SER A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 LYS A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 LEU A 447 REMARK 465 SER A 448 REMARK 465 GLU A 449 REMARK 465 PRO A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 ALA A 458 REMARK 465 TRP A 459 REMARK 465 SER A 460 REMARK 465 HIS A 461 REMARK 465 PRO A 462 REMARK 465 GLN A 463 REMARK 465 PHE A 464 REMARK 465 GLU A 465 REMARK 465 LYS A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 135 CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 245 CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 364 CE NZ REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 ILE A 436 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ILE A 436 CB ILE A 436 3555 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 269 -118.33 -111.12 REMARK 500 ASP A 435 112.82 -24.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1029 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1034 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1035 DISTANCE = 7.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NWS A 501 O7 REMARK 620 2 HOH A 676 O 167.8 REMARK 620 3 HOH A 763 O 95.7 91.0 REMARK 620 4 HOH A 779 O 90.5 80.1 83.3 REMARK 620 5 HOH A 781 O 100.1 89.7 93.0 169.1 REMARK 620 6 HOH A 942 O 93.0 83.1 163.5 110.7 71.6 REMARK 620 7 HOH A 970 O 113.5 54.9 132.1 60.5 116.4 55.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NWS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCM8 RELATED DB: SASBDB DBREF 6Q32 A 1 452 UNP Q39054 CNX1_ARATH 1 452 SEQADV 6Q32 MET A -4 UNP Q39054 INITIATING METHIONINE SEQADV 6Q32 SER A -3 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 ARG A -2 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 GLY A -1 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 SER A 0 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 ASP A 269 UNP Q39054 SER 269 ENGINEERED MUTATION SEQADV 6Q32 SER A 274 UNP Q39054 ASP 274 ENGINEERED MUTATION SEQADV 6Q32 THR A 453 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 SER A 454 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 GLY A 455 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 GLY A 456 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 SER A 457 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 ALA A 458 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 TRP A 459 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 SER A 460 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 HIS A 461 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 PRO A 462 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 GLN A 463 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 PHE A 464 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 GLU A 465 UNP Q39054 EXPRESSION TAG SEQADV 6Q32 LYS A 466 UNP Q39054 EXPRESSION TAG SEQRES 1 A 471 MET SER ARG GLY SER MET GLU GLY GLN GLY CYS CYS GLY SEQRES 2 A 471 GLY GLY GLY GLY LYS THR GLU MET ILE PRO THR GLU GLU SEQRES 3 A 471 ALA LEU ARG ILE VAL PHE GLY VAL SER LYS ARG LEU PRO SEQRES 4 A 471 PRO VAL ILE VAL SER LEU TYR GLU ALA LEU GLY LYS VAL SEQRES 5 A 471 LEU ALA GLU ASP ILE ARG ALA PRO ASP PRO LEU PRO PRO SEQRES 6 A 471 TYR PRO ALA SER VAL LYS ASP GLY TYR ALA VAL VAL ALA SEQRES 7 A 471 SER ASP GLY PRO GLY GLU TYR PRO VAL ILE THR GLU SER SEQRES 8 A 471 ARG ALA GLY ASN ASP GLY LEU GLY VAL THR VAL THR PRO SEQRES 9 A 471 GLY THR VAL ALA TYR VAL THR THR GLY GLY PRO ILE PRO SEQRES 10 A 471 ASP GLY ALA ASP ALA VAL VAL GLN VAL GLU ASP THR LYS SEQRES 11 A 471 VAL ILE GLY ASP VAL SER THR GLU SER LYS ARG VAL LYS SEQRES 12 A 471 ILE LEU ILE GLN THR LYS LYS GLY THR ASP ILE ARG ARG SEQRES 13 A 471 VAL GLY CYS ASP ILE GLU LYS ASP ALA THR VAL LEU THR SEQRES 14 A 471 THR GLY GLU ARG ILE GLY ALA SER GLU ILE GLY LEU LEU SEQRES 15 A 471 ALA THR ALA GLY VAL THR MET VAL LYS VAL TYR PRO MET SEQRES 16 A 471 PRO ILE VAL ALA ILE LEU SER THR GLY ASP GLU LEU VAL SEQRES 17 A 471 GLU PRO THR ALA GLY THR LEU GLY ARG GLY GLN ILE ARG SEQRES 18 A 471 ASP SER ASN ARG ALA MET LEU VAL ALA ALA VAL MET GLN SEQRES 19 A 471 GLN GLN CYS LYS VAL VAL ASP LEU GLY ILE VAL ARG ASP SEQRES 20 A 471 ASP ARG LYS GLU LEU GLU LYS VAL LEU ASP GLU ALA VAL SEQRES 21 A 471 SER SER GLY VAL ASP ILE ILE LEU THR SER GLY GLY VAL SEQRES 22 A 471 ASP MET GLY ASP ARG SER PHE VAL LYS PRO LEU LEU GLU SEQRES 23 A 471 GLU LYS GLY LYS VAL TYR PHE SER LYS VAL LEU MET LYS SEQRES 24 A 471 PRO GLY LYS PRO LEU THR PHE ALA GLU ILE ARG ALA LYS SEQRES 25 A 471 PRO THR GLU SER MET LEU GLY LYS THR VAL LEU ALA PHE SEQRES 26 A 471 GLY LEU PRO GLY ASN PRO VAL SER CYS LEU VAL CYS PHE SEQRES 27 A 471 ASN ILE PHE VAL VAL PRO THR ILE ARG GLN LEU ALA GLY SEQRES 28 A 471 TRP THR SER PRO HIS PRO LEU ARG VAL ARG LEU ARG LEU SEQRES 29 A 471 GLN GLU PRO ILE LYS SER ASP PRO ILE ARG PRO GLU PHE SEQRES 30 A 471 HIS ARG ALA ILE ILE LYS TRP LYS ASP ASN ASP GLY SER SEQRES 31 A 471 GLY THR PRO GLY PHE VAL ALA GLU SER THR GLY HIS GLN SEQRES 32 A 471 MET SER SER ARG LEU LEU SER MET ARG SER ALA ASN ALA SEQRES 33 A 471 LEU LEU GLU LEU PRO ALA THR GLY ASN VAL LEU SER ALA SEQRES 34 A 471 GLY SER SER VAL SER ALA ILE ILE VAL SER ASP ILE SER SEQRES 35 A 471 ALA PHE SER ILE ASP LYS LYS ALA SER LEU SER GLU PRO SEQRES 36 A 471 GLY SER THR SER GLY GLY SER ALA TRP SER HIS PRO GLN SEQRES 37 A 471 PHE GLU LYS HET NWS A 501 72 HET MG A 502 1 HET MES A 503 12 HET PGE A 504 24 HETNAM NWS MOCO-AMP HETNAM MG MAGNESIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 NWS C20 H26 MO N10 O15 P2 S2 FORMUL 3 MG MG 2+ FORMUL 4 MES C6 H13 N O4 S FORMUL 5 PGE C6 H14 O4 FORMUL 6 HOH *435(H2 O) HELIX 1 AA1 THR A 19 SER A 30 1 12 HELIX 2 AA2 TYR A 41 LEU A 44 5 4 HELIX 3 AA3 VAL A 72 GLY A 76 5 5 HELIX 4 AA4 GLY A 170 ALA A 180 1 11 HELIX 5 AA5 SER A 218 GLN A 230 1 13 HELIX 6 AA6 ASP A 243 SER A 257 1 15 HELIX 7 AA7 PHE A 275 GLY A 284 1 10 HELIX 8 AA8 ASN A 325 ALA A 345 1 21 HELIX 9 AA9 ARG A 402 ARG A 407 5 6 HELIX 10 AB1 ASP A 435 PHE A 439 5 5 SHEET 1 AA1 2 ILE A 17 PRO A 18 0 SHEET 2 AA1 2 VAL A 291 LEU A 292 1 O LEU A 292 N ILE A 17 SHEET 1 AA2 3 VAL A 36 SER A 39 0 SHEET 2 AA2 3 MET A 184 TYR A 188 -1 O VAL A 185 N VAL A 38 SHEET 3 AA2 3 VAL A 47 LEU A 48 -1 N VAL A 47 O TYR A 188 SHEET 1 AA3 2 ILE A 52 ARG A 53 0 SHEET 2 AA3 2 THR A 161 LEU A 163 -1 O LEU A 163 N ILE A 52 SHEET 1 AA4 2 ALA A 63 SER A 64 0 SHEET 2 AA4 2 ILE A 149 ARG A 150 -1 O ARG A 150 N ALA A 63 SHEET 1 AA5 6 ALA A 117 GLN A 120 0 SHEET 2 AA5 6 GLY A 68 VAL A 71 -1 N TYR A 69 O VAL A 119 SHEET 3 AA5 6 VAL A 102 VAL A 105 -1 O VAL A 105 N GLY A 68 SHEET 4 AA5 6 GLY A 78 SER A 86 1 N SER A 86 O TYR A 104 SHEET 5 AA5 6 ARG A 136 ILE A 139 -1 O ILE A 139 N GLY A 78 SHEET 6 AA5 6 THR A 124 ILE A 127 -1 N LYS A 125 O LYS A 138 SHEET 1 AA6 6 VAL A 234 VAL A 240 0 SHEET 2 AA6 6 VAL A 193 THR A 198 1 N ILE A 195 O LEU A 237 SHEET 3 AA6 6 ILE A 261 SER A 265 1 O LEU A 263 N ALA A 194 SHEET 4 AA6 6 THR A 316 LEU A 322 1 O LEU A 318 N ILE A 262 SHEET 5 AA6 6 THR A 300 ARG A 305 -1 N ILE A 304 O VAL A 317 SHEET 6 AA6 6 LYS A 285 PHE A 288 -1 N LYS A 285 O GLU A 303 SHEET 1 AA7 2 LEU A 202 VAL A 203 0 SHEET 2 AA7 2 ILE A 215 ARG A 216 1 O ILE A 215 N VAL A 203 SHEET 1 AA8 6 ARG A 354 LEU A 359 0 SHEET 2 AA8 6 GLY A 389 SER A 394 1 O PHE A 390 N ARG A 358 SHEET 3 AA8 6 GLU A 371 LYS A 380 -1 N LYS A 380 O GLY A 389 SHEET 4 AA8 6 ALA A 411 LEU A 415 -1 O LEU A 413 N HIS A 373 SHEET 5 AA8 6 SER A 427 ILE A 432 -1 O ILE A 431 N LEU A 412 SHEET 6 AA8 6 ARG A 354 LEU A 359 -1 N VAL A 355 O ALA A 430 SHEET 1 AA9 2 ILE A 363 LYS A 364 0 SHEET 2 AA9 2 VAL A 421 LEU A 422 -1 O LEU A 422 N ILE A 363 LINK O7 NWS A 501 MG MG A 502 1555 1555 2.27 LINK MG MG A 502 O HOH A 676 1555 1555 2.40 LINK MG MG A 502 O HOH A 763 1555 1555 2.23 LINK MG MG A 502 O HOH A 779 1555 1555 2.41 LINK MG MG A 502 O HOH A 781 1555 1555 2.40 LINK MG MG A 502 O HOH A 942 1555 1555 2.45 LINK MG MG A 502 O HOH A 970 1555 3555 2.85 CISPEP 1 LEU A 58 PRO A 59 0 -10.85 CISPEP 2 LYS A 294 PRO A 295 0 -13.31 SITE 1 AC1 37 VAL A 65 LYS A 66 ASP A 67 THR A 107 SITE 2 AC1 37 GLY A 108 GLU A 122 ARG A 150 SER A 197 SITE 3 AC1 37 GLU A 201 LEU A 202 ILE A 215 ASP A 217 SITE 4 AC1 37 SER A 218 ASN A 219 GLY A 266 GLY A 267 SITE 5 AC1 37 VAL A 268 ASP A 269 PRO A 295 GLY A 296 SITE 6 AC1 37 LYS A 297 PRO A 323 GLY A 324 ASN A 325 SITE 7 AC1 37 SER A 328 ARG A 369 SER A 400 MG A 502 SITE 8 AC1 37 HOH A 603 HOH A 632 HOH A 634 HOH A 743 SITE 9 AC1 37 HOH A 751 HOH A 762 HOH A 777 HOH A 803 SITE 10 AC1 37 HOH A 837 SITE 1 AC2 7 NWS A 501 HOH A 676 HOH A 763 HOH A 779 SITE 2 AC2 7 HOH A 781 HOH A 942 HOH A 970 SITE 1 AC3 7 GLU A 50 ILE A 52 ARG A 53 MET A 184 SITE 2 AC3 7 HOH A 654 HOH A 660 HOH A 747 SITE 1 AC4 4 ASP A 200 VAL A 203 ARG A 241 HOH A 738 CRYST1 65.010 123.290 133.140 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007511 0.00000