HEADER TRANSCRIPTION 03-DEC-18 6Q36 TITLE TEAD4(216-434) COMPLEXED WITH OPTIMIZED PEPTIDE 9 AND MYRISTOATE TITLE 2 (COVALENTLY BOUND) AT 2.01A RESOLUTION: STRUCTURE-BASED DESIGN OF TITLE 3 POTENT LINEAR PEPTIDE INHIBITORS OF THE YAP-TEAD PROTEIN-PROTEIN TITLE 4 INTERACTION DERIVED FROM THE YAP OMEGA-LOOP SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ENHANCER FACTOR TEF-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, YAP BINDING DOMAIN; COMPND 5 SYNONYM: TEA DOMAIN FAMILY MEMBER 4,TEAD-4,TRANSCRIPTION FACTOR 13- COMPND 6 LIKE 1,TRANSCRIPTION FACTOR RTEF-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACE-PRO-6CW-ARG-LEU-ARG-LYS-2JH-HYP-ASP-SER-PHE-ALN-LYS- COMPND 10 GLU-PRO-NH2; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TEAD4, RTEF1, TCF13L1, TEF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION FACTOR, CO-ACTIVATOR, TRANSCRIPTION REGULATION, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.KALLEN REVDAT 4 24-JAN-24 6Q36 1 REMARK REVDAT 3 15-NOV-23 6Q36 1 LINK ATOM REVDAT 2 21-AUG-19 6Q36 1 JRNL REVDAT 1 03-JUL-19 6Q36 0 JRNL AUTH P.FURET,B.SALEM,Y.MESROUZE,T.SCHMELZLE,I.LEWIS,J.KALLEN, JRNL AUTH 2 P.CHENE JRNL TITL STRUCTURE-BASED DESIGN OF POTENT LINEAR PEPTIDE INHIBITORS JRNL TITL 2 OF THE YAP-TEAD PROTEIN-PROTEIN INTERACTION DERIVED FROM THE JRNL TITL 3 YAP OMEGA-LOOP SEQUENCE. JRNL REF BIOORG.MED.CHEM.LETT. V. 29 2316 2019 JRNL REFN ESSN 1464-3405 JRNL PMID 31235263 JRNL DOI 10.1016/J.BMCL.2019.06.022 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 43018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2265 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.331 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Q36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M NAK PHOSPHATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.43400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.21900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.43400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.21900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 716 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 705 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 215 REMARK 465 ILE A 306 REMARK 465 GLU A 307 REMARK 465 ASP A 308 REMARK 465 GLU A 309 REMARK 465 GLY B 215 REMARK 465 PRO B 216 REMARK 465 ILE B 306 REMARK 465 GLU B 307 REMARK 465 ASP B 308 REMARK 465 GLU B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 243 ND2 ASN B 243 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 15 CD GLU C 15 OE1 0.084 REMARK 500 GLU D 15 CD GLU D 15 OE2 0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 218 -63.59 -96.77 REMARK 500 ASP A 259 82.11 4.24 REMARK 500 ASN A 354 49.82 35.74 REMARK 500 GLU B 276 -162.88 -124.28 REMARK 500 LYS B 277 -145.37 69.69 REMARK 500 GLN B 405 15.82 59.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 4 0.29 SIDE CHAIN REMARK 500 ARG C 6 0.08 SIDE CHAIN REMARK 500 ARG D 4 0.29 SIDE CHAIN REMARK 500 ARG D 6 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYR B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 1 and PRO C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 2 and 6CW C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 6CW C 3 and ARG C 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS C 7 and 2JH C 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 2JH C 8 and HYP C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 9 and ASP C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 12 and ALN C REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALN C 13 and LYS C REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 16 and NH2 C REMARK 800 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 1 and PRO D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO D 2 and 6CW D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 6CW D 3 and ARG D 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LYS D 7 and 2JH D 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 2JH D 8 and HYP D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP D 9 and ASP D 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE D 12 and ALN D REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALN D 13 and LYS D REMARK 800 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO D 16 and NH2 D REMARK 800 17 DBREF 6Q36 A 217 434 UNP Q15561 TEAD4_HUMAN 217 434 DBREF 6Q36 B 217 434 UNP Q15561 TEAD4_HUMAN 217 434 DBREF 6Q36 C 1 17 PDB 6Q36 6Q36 1 17 DBREF 6Q36 D 1 17 PDB 6Q36 6Q36 1 17 SEQADV 6Q36 GLY A 215 UNP Q15561 EXPRESSION TAG SEQADV 6Q36 PRO A 216 UNP Q15561 EXPRESSION TAG SEQADV 6Q36 GLY B 215 UNP Q15561 EXPRESSION TAG SEQADV 6Q36 PRO B 216 UNP Q15561 EXPRESSION TAG SEQRES 1 A 220 GLY PRO ARG SER VAL ALA SER SER LYS LEU TRP MET LEU SEQRES 2 A 220 GLU PHE SER ALA PHE LEU GLU GLN GLN GLN ASP PRO ASP SEQRES 3 A 220 THR TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY GLN SER SEQRES 4 A 220 SER PRO SER TYR SER ASP PRO TYR LEU GLU ALA VAL ASP SEQRES 5 A 220 ILE ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY SEQRES 6 A 220 GLY LEU LYS ASP LEU PHE GLU ARG GLY PRO SER ASN ALA SEQRES 7 A 220 PHE PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN THR ASN SEQRES 8 A 220 ILE GLU ASP GLU GLY SER SER PHE TYR GLY VAL SER SER SEQRES 9 A 220 GLN TYR GLU SER PRO GLU ASN MET ILE ILE THR CYS SER SEQRES 10 A 220 THR LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS SEQRES 11 A 220 VAL GLU THR GLU TYR ALA ARG TYR GLU ASN GLY HIS TYR SEQRES 12 A 220 SER TYR ARG ILE HIS ARG SER PRO LEU CYS GLU TYR MET SEQRES 13 A 220 ILE ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS SEQRES 14 A 220 TYR MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU SEQRES 15 A 220 GLN VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU SEQRES 16 A 220 CYS ILE ALA TYR VAL PHE GLU VAL SER ALA SER GLU HIS SEQRES 17 A 220 GLY ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS GLU SEQRES 1 B 220 GLY PRO ARG SER VAL ALA SER SER LYS LEU TRP MET LEU SEQRES 2 B 220 GLU PHE SER ALA PHE LEU GLU GLN GLN GLN ASP PRO ASP SEQRES 3 B 220 THR TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY GLN SER SEQRES 4 B 220 SER PRO SER TYR SER ASP PRO TYR LEU GLU ALA VAL ASP SEQRES 5 B 220 ILE ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY SEQRES 6 B 220 GLY LEU LYS ASP LEU PHE GLU ARG GLY PRO SER ASN ALA SEQRES 7 B 220 PHE PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN THR ASN SEQRES 8 B 220 ILE GLU ASP GLU GLY SER SER PHE TYR GLY VAL SER SER SEQRES 9 B 220 GLN TYR GLU SER PRO GLU ASN MET ILE ILE THR CYS SER SEQRES 10 B 220 THR LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS SEQRES 11 B 220 VAL GLU THR GLU TYR ALA ARG TYR GLU ASN GLY HIS TYR SEQRES 12 B 220 SER TYR ARG ILE HIS ARG SER PRO LEU CYS GLU TYR MET SEQRES 13 B 220 ILE ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS SEQRES 14 B 220 TYR MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU SEQRES 15 B 220 GLN VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU SEQRES 16 B 220 CYS ILE ALA TYR VAL PHE GLU VAL SER ALA SER GLU HIS SEQRES 17 B 220 GLY ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS GLU SEQRES 1 C 17 ACE PRO 6CW ARG LEU ARG LYS 2JH HYP ASP SER PHE ALN SEQRES 2 C 17 LYS GLU PRO NH2 SEQRES 1 D 17 ACE PRO 6CW ARG LEU ARG LYS 2JH HYP ASP SER PHE ALN SEQRES 2 D 17 LYS GLU PRO NH2 HET ACE C 1 3 HET 6CW C 3 15 HET 2JH C 8 9 HET HYP C 9 8 HET ALN C 13 15 HET NH2 C 17 1 HET ACE D 1 3 HET 6CW D 3 15 HET 2JH D 8 9 HET HYP D 9 8 HET ALN D 13 15 HET NH2 D 17 1 HET MYR A 501 15 HET PO4 A 502 5 HET PO4 A 503 5 HET MYR B 501 15 HET PO4 B 502 5 HET PO4 B 503 5 HETNAM ACE ACETYL GROUP HETNAM 6CW 6-CHLORO-L-TRYPTOPHAN HETNAM 2JH 3-CYCLOBUTYL-L-ALANINE HETNAM HYP 4-HYDROXYPROLINE HETNAM ALN NAPHTHALEN-2-YL-3-ALANINE HETNAM NH2 AMINO GROUP HETNAM MYR MYRISTIC ACID HETNAM PO4 PHOSPHATE ION HETSYN HYP HYDROXYPROLINE FORMUL 3 ACE 2(C2 H4 O) FORMUL 3 6CW 2(C11 H11 CL N2 O2) FORMUL 3 2JH 2(C7 H13 N O2) FORMUL 3 HYP 2(C5 H9 N O3) FORMUL 3 ALN 2(C13 H13 N O2) FORMUL 3 NH2 2(H2 N) FORMUL 5 MYR 2(C14 H28 O2) FORMUL 6 PO4 4(O4 P 3-) FORMUL 11 HOH *243(H2 O) HELIX 1 AA1 PRO A 255 ASP A 259 5 5 HELIX 2 AA2 ARG A 268 PHE A 274 5 7 HELIX 3 AA3 GLY A 280 GLY A 288 1 9 HELIX 4 AA4 PRO A 289 ASN A 291 5 3 HELIX 5 AA5 CYS A 367 HIS A 379 1 13 HELIX 6 AA6 GLU A 382 GLU A 391 1 10 HELIX 7 AA7 ARG B 268 PHE B 274 5 7 HELIX 8 AA8 GLY B 280 GLY B 288 1 9 HELIX 9 AA9 PRO B 289 ASN B 291 5 3 HELIX 10 AB1 CYS B 367 HIS B 379 1 13 HELIX 11 AB2 GLU B 382 GLU B 391 1 10 HELIX 12 AB3 PRO C 2 ARG C 6 5 5 HELIX 13 AB4 HYP C 9 LYS C 14 5 6 HELIX 14 AB5 PRO D 2 ARG D 6 5 5 HELIX 15 AB6 HYP D 9 LYS D 14 5 6 SHEET 1 AA110 ARG A 351 GLU A 353 0 SHEET 2 AA110 HIS A 356 PRO A 365 -1 O SER A 358 N ARG A 351 SHEET 3 AA110 SER A 311 SER A 322 -1 N TYR A 320 O TYR A 359 SHEET 4 AA110 TRP A 225 ASP A 238 -1 N GLU A 234 O PHE A 313 SHEET 5 AA110 THR A 241 ILE A 250 -1 O ASN A 243 N GLN A 235 SHEET 6 AA110 THR B 241 ILE B 250 -1 O LYS B 244 N TYR A 242 SHEET 7 AA110 TRP B 225 ASP B 238 -1 N GLN B 235 O ASN B 243 SHEET 8 AA110 SER B 312 SER B 322 -1 O PHE B 313 N GLU B 234 SHEET 9 AA110 HIS B 356 PRO B 365 -1 O TYR B 357 N SER B 322 SHEET 10 AA110 ARG B 351 GLU B 353 -1 N GLU B 353 O HIS B 356 SHEET 1 AA2 7 ALA A 264 ASP A 266 0 SHEET 2 AA2 7 GLN A 425 VAL A 432 1 O VAL A 432 N VAL A 265 SHEET 3 AA2 7 PHE A 293 ALA A 300 -1 N TRP A 299 O GLN A 425 SHEET 4 AA2 7 THR A 407 VAL A 417 1 O ALA A 412 N VAL A 296 SHEET 5 AA2 7 PHE A 393 ASN A 401 -1 N VAL A 399 O LEU A 409 SHEET 6 AA2 7 ILE A 328 SER A 336 -1 N CYS A 335 O THR A 394 SHEET 7 AA2 7 LYS A 339 GLU A 348 -1 O GLU A 346 N CYS A 330 SHEET 1 AA3 7 GLU B 263 ASP B 266 0 SHEET 2 AA3 7 GLN B 425 VAL B 432 1 O VAL B 432 N VAL B 265 SHEET 3 AA3 7 PHE B 293 ALA B 300 -1 N LEU B 295 O TYR B 429 SHEET 4 AA3 7 THR B 407 VAL B 417 1 O ALA B 412 N VAL B 296 SHEET 5 AA3 7 PHE B 393 ASN B 401 -1 N VAL B 399 O LEU B 409 SHEET 6 AA3 7 ILE B 327 SER B 336 -1 N CYS B 335 O THR B 394 SHEET 7 AA3 7 LYS B 339 TYR B 349 -1 O GLU B 346 N CYS B 330 LINK SG CYS A 367 C1 MYR A 501 1555 1555 1.77 LINK SG CYS B 367 C1 MYR B 501 1555 1555 1.78 LINK C ACE C 1 N PRO C 2 1555 1555 1.37 LINK C PRO C 2 N 6CW C 3 1555 1555 1.36 LINK C 6CW C 3 N ARG C 4 1555 1555 1.36 LINK C LYS C 7 N 2JH C 8 1555 1555 1.35 LINK C 2JH C 8 N HYP C 9 1555 1555 1.37 LINK C HYP C 9 N ASP C 10 1555 1555 1.36 LINK C PHE C 12 N ALN C 13 1555 1555 1.36 LINK C ALN C 13 N LYS C 14 1555 1555 1.36 LINK C PRO C 16 N NH2 C 17 1555 1555 1.35 LINK C ACE D 1 N PRO D 2 1555 1555 1.37 LINK C PRO D 2 N 6CW D 3 1555 1555 1.36 LINK C 6CW D 3 N ARG D 4 1555 1555 1.36 LINK C LYS D 7 N 2JH D 8 1555 1555 1.36 LINK C 2JH D 8 N HYP D 9 1555 1555 1.37 LINK C HYP D 9 N ASP D 10 1555 1555 1.36 LINK C PHE D 12 N ALN D 13 1555 1555 1.36 LINK C ALN D 13 N LYS D 14 1555 1555 1.36 LINK C PRO D 16 N NH2 D 17 1555 1555 1.35 CISPEP 1 GLY A 288 PRO A 289 0 -2.31 CISPEP 2 GLY B 288 PRO B 289 0 1.45 SITE 1 AC1 4 VAL A 334 LYS A 344 LEU A 366 CYS A 367 SITE 1 AC2 7 ARG A 351 GLU A 353 SER A 358 ARG A 360 SITE 2 AC2 7 HOH A 609 ARG B 351 ARG B 360 SITE 1 AC3 6 SER A 317 ARG A 360 HIS A 362 HOH A 611 SITE 2 AC3 6 HIS B 362 PO4 B 503 SITE 1 AC4 4 VAL B 334 CYS B 367 PHE B 415 HOH B 655 SITE 1 AC5 9 HIS B 249 ILE B 250 GLY B 251 GLN B 252 SITE 2 AC5 9 SER B 253 HIS B 426 HOH B 607 HOH B 649 SITE 3 AC5 9 HOH B 670 SITE 1 AC6 8 HIS A 362 ARG A 363 PO4 A 503 LYS B 244 SITE 2 AC6 8 HIS B 362 ARG B 363 HOH B 648 HOH B 673 SITE 1 AC7 7 TYR A 384 HOH A 636 6CW C 3 ARG C 4 SITE 2 AC7 7 LEU C 5 ARG C 6 HOH C 103 SITE 1 AC8 10 LYS A 273 GLU A 391 ACE C 1 ARG C 4 SITE 2 AC8 10 LEU C 5 ARG C 6 PHE C 12 ALN C 13 SITE 3 AC8 10 HOH C 103 HOH C 104 SITE 1 AC9 10 LYS A 273 GLU A 391 ACE C 1 PRO C 2 SITE 2 AC9 10 LEU C 5 ARG C 6 PHE C 12 ALN C 13 SITE 3 AC9 10 HOH C 101 HOH C 104 SITE 1 AD1 7 ASP A 266 GLN A 269 GLU A 434 ARG C 6 SITE 2 AD1 7 HYP C 9 ALN C 13 HOH C 102 SITE 1 AD2 7 ALA A 264 ARG C 6 LYS C 7 ASP C 10 SITE 2 AD2 7 SER C 11 PHE C 12 ALN C 13 SITE 1 AD3 8 ALA A 264 GLU A 368 2JH C 8 SER C 11 SITE 2 AD3 8 PHE C 12 ALN C 13 HOH C 108 HOH C 110 SITE 1 AD4 10 LYS A 297 TRP A 299 TYR A 429 6CW C 3 SITE 2 AD4 10 ARG C 4 2JH C 8 HYP C 9 ASP C 10 SITE 3 AD4 10 SER C 11 LYS C 14 SITE 1 AD5 11 HIS A 427 6CW C 3 ARG C 4 2JH C 8 SITE 2 AD5 11 HYP C 9 ASP C 10 SER C 11 PHE C 12 SITE 3 AD5 11 GLU C 15 PRO C 16 HOH C 107 SITE 1 AD6 5 GLN A 425 HIS A 426 HIS A 427 LYS C 14 SITE 2 AD6 5 GLU C 15 SITE 1 AD7 6 PHE B 373 LYS B 376 6CW D 3 ARG D 4 SITE 2 AD7 6 LEU D 5 ARG D 6 SITE 1 AD8 11 ILE B 270 LYS B 273 PHE B 373 GLU B 391 SITE 2 AD8 11 VAL B 414 ACE D 1 ARG D 4 LEU D 5 SITE 3 AD8 11 ARG D 6 2JH D 8 ALN D 13 SITE 1 AD9 11 ILE B 270 LYS B 273 PHE B 337 GLU B 391 SITE 2 AD9 11 VAL B 414 PRO D 2 LEU D 5 ARG D 6 SITE 3 AD9 11 2JH D 8 ALN D 13 HOH D 101 SITE 1 AE1 7 ASP B 266 GLN B 269 6CW D 3 ARG D 6 SITE 2 AE1 7 HYP D 9 ALN D 13 HOH D 103 SITE 1 AE2 9 ALA B 264 GLU B 368 6CW D 3 ARG D 6 SITE 2 AE2 9 LYS D 7 ASP D 10 SER D 11 PHE D 12 SITE 3 AE2 9 ALN D 13 SITE 1 AE3 7 ALA B 264 GLU B 368 HIS B 375 2JH D 8 SITE 2 AE3 7 SER D 11 PHE D 12 ALN D 13 SITE 1 AE4 11 LYS B 297 TRP B 299 TYR B 429 6CW D 3 SITE 2 AE4 11 ARG D 4 2JH D 8 HYP D 9 ASP D 10 SITE 3 AE4 11 SER D 11 LYS D 14 HOH D 104 SITE 1 AE5 11 HIS B 427 6CW D 3 ARG D 4 2JH D 8 SITE 2 AE5 11 HYP D 9 ASP D 10 SER D 11 PHE D 12 SITE 3 AE5 11 GLU D 15 PRO D 16 HOH D 104 SITE 1 AE6 6 TRP B 299 GLN B 425 HIS B 426 HIS B 427 SITE 2 AE6 6 LYS D 14 GLU D 15 CRYST1 172.868 40.438 98.034 90.00 93.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005785 0.000000 0.000348 0.00000 SCALE2 0.000000 0.024729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010219 0.00000