HEADER DNA BINDING PROTEIN 06-DEC-18 6Q4U TITLE KLENTAQ DNA POL IN A CLOSED TERNARY COMPLEX WITH 7-DEAZA-7-(2-(2- TITLE 2 HYDROXYETHOXY)-N-(PROP-2-YN-1-YL)ACETAMIDE)-2-DATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAQ POLYMERASE 1; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*(DOC))-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*AP*AP*CP*TP*GP*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)- COMPND 13 3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POLA, POL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE ARCHAEAL B-FAMILY MODIFIED NUCLEOTIDE NEXT-GENERATION KEYWDS 2 SEQUENCING, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KROPP,K.DIEDERICHS,A.MARX REVDAT 5 24-JAN-24 6Q4U 1 LINK REVDAT 4 14-AUG-19 6Q4U 1 REMARK REVDAT 3 10-APR-19 6Q4U 1 JRNL REVDAT 2 20-MAR-19 6Q4U 1 JRNL REVDAT 1 27-FEB-19 6Q4U 0 JRNL AUTH H.M.KROPP,K.DIEDERICHS,A.MARX JRNL TITL THE STRUCTURE OF AN ARCHAEAL B-FAMILY DNA POLYMERASE IN JRNL TITL 2 COMPLEX WITH A CHEMICALLY MODIFIED NUCLEOTIDE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 58 5457 2019 JRNL REFN ESSN 1521-3773 JRNL PMID 30761722 JRNL DOI 10.1002/ANIE.201900315 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3283: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3670 - 6.1571 0.99 2641 155 0.1498 0.1670 REMARK 3 2 6.1571 - 4.8887 1.00 2653 144 0.1411 0.1989 REMARK 3 3 4.8887 - 4.2712 1.00 2706 123 0.1264 0.1784 REMARK 3 4 4.2712 - 3.8809 1.00 2633 169 0.1355 0.1440 REMARK 3 5 3.8809 - 3.6028 1.00 2637 179 0.1574 0.2192 REMARK 3 6 3.6028 - 3.3905 0.99 2603 140 0.1672 0.1801 REMARK 3 7 3.3905 - 3.2207 1.00 2655 144 0.1750 0.2485 REMARK 3 8 3.2207 - 3.0805 1.00 2669 148 0.1988 0.2056 REMARK 3 9 3.0805 - 2.9620 1.00 2671 129 0.2106 0.2694 REMARK 3 10 2.9620 - 2.8598 1.00 2687 152 0.2269 0.2777 REMARK 3 11 2.8598 - 2.7704 1.00 2656 150 0.2246 0.2762 REMARK 3 12 2.7704 - 2.6912 1.00 2655 139 0.2184 0.2162 REMARK 3 13 2.6912 - 2.6203 1.00 2679 152 0.2211 0.2874 REMARK 3 14 2.6203 - 2.5564 1.00 2675 144 0.2209 0.2546 REMARK 3 15 2.5564 - 2.4983 1.00 2584 164 0.2197 0.2628 REMARK 3 16 2.4983 - 2.4451 1.00 2693 130 0.2231 0.2878 REMARK 3 17 2.4451 - 2.3962 1.00 2706 129 0.2342 0.2000 REMARK 3 18 2.3962 - 2.3510 1.00 2703 116 0.2243 0.2879 REMARK 3 19 2.3510 - 2.3090 1.00 2675 131 0.2410 0.2641 REMARK 3 20 2.3090 - 2.2699 1.00 2672 140 0.2479 0.2892 REMARK 3 21 2.2699 - 2.2333 1.00 2615 135 0.2450 0.2859 REMARK 3 22 2.2333 - 2.1989 1.00 2758 117 0.2552 0.2983 REMARK 3 23 2.1989 - 2.1666 1.00 2621 141 0.2539 0.2803 REMARK 3 24 2.1666 - 2.1361 1.00 2716 122 0.2593 0.3409 REMARK 3 25 2.1361 - 2.1072 1.00 2666 123 0.2732 0.3341 REMARK 3 26 2.1072 - 2.0798 1.00 2683 140 0.2825 0.2858 REMARK 3 27 2.0798 - 2.0538 1.00 2688 147 0.2728 0.2656 REMARK 3 28 2.0538 - 2.0291 1.00 2649 141 0.2963 0.2762 REMARK 3 29 2.0291 - 2.0055 0.99 2638 150 0.3339 0.3761 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5136 REMARK 3 ANGLE : 0.615 7072 REMARK 3 CHIRALITY : 0.040 769 REMARK 3 PLANARITY : 0.003 843 REMARK 3 DIHEDRAL : 17.392 3040 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8473 -41.1178 -18.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.4819 T22: 0.4065 REMARK 3 T33: 0.5188 T12: -0.1292 REMARK 3 T13: 0.0920 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.0074 L22: 2.2697 REMARK 3 L33: 1.6021 L12: -0.4522 REMARK 3 L13: -0.0594 L23: 0.0502 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: 0.0162 S13: -0.4333 REMARK 3 S21: -0.2922 S22: 0.0157 S23: -0.3976 REMARK 3 S31: 0.3749 S32: 0.0202 S33: 0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 453 THROUGH 562 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7262 -8.7322 6.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.6122 T22: 0.2577 REMARK 3 T33: 0.3650 T12: -0.0305 REMARK 3 T13: 0.0340 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.8132 L22: 1.7010 REMARK 3 L33: 3.6698 L12: 1.0079 REMARK 3 L13: -0.8860 L23: -0.2923 REMARK 3 S TENSOR REMARK 3 S11: 0.3538 S12: -0.1662 S13: 0.2596 REMARK 3 S21: 0.2250 S22: -0.1794 S23: 0.0550 REMARK 3 S31: -1.1989 S32: -0.1167 S33: -0.1736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 832 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0317 -20.8754 -11.7811 REMARK 3 T TENSOR REMARK 3 T11: 0.3417 T22: 0.6643 REMARK 3 T33: 0.3186 T12: 0.1124 REMARK 3 T13: -0.0339 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.4317 L22: 1.6616 REMARK 3 L33: 3.5975 L12: 0.5534 REMARK 3 L13: -0.1002 L23: -0.5239 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: 0.0665 S13: 0.0989 REMARK 3 S21: -0.1080 S22: 0.1940 S23: 0.2216 REMARK 3 S31: -0.5403 S32: -1.1963 S33: -0.0802 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1167 -23.5451 5.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.2963 T22: 0.3505 REMARK 3 T33: 0.4222 T12: -0.0536 REMARK 3 T13: 0.0084 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.8937 L22: 6.3105 REMARK 3 L33: 3.6684 L12: -4.2123 REMARK 3 L13: 1.9260 L23: -2.4503 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: 0.5360 S13: -0.1943 REMARK 3 S21: 0.0989 S22: -0.4906 S23: -0.3864 REMARK 3 S31: -0.0868 S32: 0.4267 S33: 0.2997 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 201 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1213 -21.7614 7.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.6351 T22: 0.6512 REMARK 3 T33: 0.3312 T12: 0.0311 REMARK 3 T13: -0.0872 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 8.3397 L22: 7.8178 REMARK 3 L33: 3.0931 L12: 0.5578 REMARK 3 L13: -1.1019 L23: 0.3678 REMARK 3 S TENSOR REMARK 3 S11: 0.2769 S12: 0.0161 S13: 0.0010 REMARK 3 S21: 1.6343 S22: -0.5920 S23: -0.6328 REMARK 3 S31: -0.6652 S32: -1.3779 S33: 0.2496 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 206 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3881 -23.1540 5.2264 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.2001 REMARK 3 T33: 0.3197 T12: 0.0341 REMARK 3 T13: -0.0167 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.1410 L22: 4.1977 REMARK 3 L33: 2.9767 L12: 1.6304 REMARK 3 L13: -2.8736 L23: 0.7864 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.2200 S13: -0.4300 REMARK 3 S21: 0.3470 S22: 0.4132 S23: -0.4128 REMARK 3 S31: -0.1429 S32: 0.6348 S33: -0.2932 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 216 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6298 -33.7310 13.7305 REMARK 3 T TENSOR REMARK 3 T11: 0.5009 T22: 0.8991 REMARK 3 T33: 1.0485 T12: 0.2376 REMARK 3 T13: 0.1403 T23: 0.4871 REMARK 3 L TENSOR REMARK 3 L11: 8.4855 L22: 4.2765 REMARK 3 L33: 8.4716 L12: 5.3870 REMARK 3 L13: -7.3728 L23: -4.6244 REMARK 3 S TENSOR REMARK 3 S11: -0.1528 S12: -0.5081 S13: -0.6061 REMARK 3 S21: 0.4320 S22: 0.3885 S23: 0.2887 REMARK 3 S31: 0.4298 S32: 0.0370 S33: -0.1249 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200012591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81414 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.005 REMARK 200 RESOLUTION RANGE LOW (A) : 47.354 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.260 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.36 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 % PEG 8000, 0.1 M TRIS PH 8.0, 0.2 REMARK 280 M MAGNESIUM FORMATE, 10 % GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.29767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.59533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.59533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.29767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1195 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 292 REMARK 465 ALA A 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1043 O HOH A 1149 2.04 REMARK 500 O HOH A 1082 O HOH A 1089 2.04 REMARK 500 O HOH A 1050 O HOH A 1186 2.12 REMARK 500 O HOH A 1155 O HOH A 1183 2.13 REMARK 500 O HOH C 428 O HOH C 430 2.15 REMARK 500 O HOH A 1103 O HOH A 1161 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DOC B 112 O3' - P - OP2 ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 328 146.05 -174.96 REMARK 500 THR A 399 -156.00 -101.75 REMARK 500 VAL A 433 -68.55 -124.15 REMARK 500 ASP A 496 -62.17 -98.97 REMARK 500 TYR A 545 -56.48 -121.93 REMARK 500 VAL A 586 -15.15 -160.32 REMARK 500 PRO A 685 174.53 -55.76 REMARK 500 HIS A 784 -67.01 72.52 REMARK 500 TYR A 811 87.85 -163.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD2 REMARK 620 2 ASP A 785 OD1 112.1 REMARK 620 3 HHZ A 903 O3 108.8 85.1 REMARK 620 4 HOH A1034 O 100.9 87.6 150.1 REMARK 620 5 HOH A1078 O 93.4 153.8 80.9 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 902 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 OD1 REMARK 620 2 TYR A 611 O 74.3 REMARK 620 3 ASP A 785 OD2 90.4 102.1 REMARK 620 4 HHZ A 903 O3 100.7 171.3 84.9 REMARK 620 5 HHZ A 903 O6 169.6 99.0 98.8 85.0 REMARK 620 6 HHZ A 903 O8 88.1 82.1 174.9 90.7 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 107 O6 REMARK 620 2 HOH B 302 O 96.3 REMARK 620 3 HOH B 311 O 93.8 65.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HHZ A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 302 DBREF 6Q4U A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 6Q4U B 101 112 PDB 6Q4U 6Q4U 101 112 DBREF 6Q4U C 201 216 PDB 6Q4U 6Q4U 201 216 SEQADV 6Q4U MET A 292 UNP P19821 INITIATING METHIONINE SEQRES 1 A 541 MET ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY SEQRES 2 A 541 ALA PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET SEQRES 3 A 541 TRP ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY SEQRES 4 A 541 ARG VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG SEQRES 5 A 541 ASP LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SEQRES 6 A 541 SER VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO SEQRES 7 A 541 GLY ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SEQRES 8 A 541 SER ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY SEQRES 9 A 541 GLY GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SEQRES 10 A 541 SER GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU SEQRES 11 A 541 GLY GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU SEQRES 12 A 541 ARG PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR SEQRES 13 A 541 GLY VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER SEQRES 14 A 541 LEU GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU SEQRES 15 A 541 VAL PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER SEQRES 16 A 541 ARG ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY SEQRES 17 A 541 LEU PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SEQRES 18 A 541 SER THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA SEQRES 19 A 541 HIS PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU SEQRES 20 A 541 THR LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP SEQRES 21 A 541 LEU ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE SEQRES 22 A 541 ASN GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER SEQRES 23 A 541 ASP PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU SEQRES 24 A 541 GLY GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY SEQRES 25 A 541 TRP LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU SEQRES 26 A 541 ARG VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE SEQRES 27 A 541 ARG VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR SEQRES 28 A 541 ALA SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP SEQRES 29 A 541 PRO LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY SEQRES 30 A 541 VAL LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU SEQRES 31 A 541 LEU ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU SEQRES 32 A 541 ARG TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE SEQRES 33 A 541 GLU LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL SEQRES 34 A 541 GLU THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU SEQRES 35 A 541 GLU ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG SEQRES 36 A 541 MET ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP SEQRES 37 A 541 LEU MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU SEQRES 38 A 541 GLU GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP SEQRES 39 A 541 GLU LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA SEQRES 40 A 541 VAL ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR SEQRES 41 A 541 PRO LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY SEQRES 42 A 541 GLU ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DC DA DOC SEQRES 1 C 16 DA DA DC DT DG DT DG DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC HET DOC B 112 30 HET MG A 901 1 HET MN A 902 1 HET HHZ A 903 67 HET EDO A 904 10 HET MG B 201 1 HET GOL C 301 14 HET EDO C 302 20 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETNAM HHZ [[(2~{R},3~{S},5~{R})-5-[4-AZANYL-5-[3-[2-(2- HETNAM 2 HHZ HYDROXYETHYLOXY)ETHANOYLAMINO]PROP-1-YNYL]PYRROLO[2,3- HETNAM 3 HHZ D]PYRIMIDIN-7-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY- HETNAM 4 HHZ OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 MG 2(MG 2+) FORMUL 5 MN MN 2+ FORMUL 6 HHZ C18 H26 N5 O15 P3 FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 11 HOH *266(H2 O) HELIX 1 AA1 GLU A 337 ARG A 343 1 7 HELIX 2 AA2 LEU A 352 GLU A 363 1 12 HELIX 3 AA3 ASP A 372 ASP A 381 1 10 HELIX 4 AA4 THR A 386 GLY A 395 1 10 HELIX 5 AA5 GLU A 401 GLU A 421 1 21 HELIX 6 AA6 GLU A 423 VAL A 433 1 11 HELIX 7 AA7 VAL A 433 GLY A 448 1 16 HELIX 8 AA8 ASP A 452 GLY A 479 1 28 HELIX 9 AA9 SER A 486 ASP A 496 1 11 HELIX 10 AB1 SER A 515 LEU A 522 1 8 HELIX 11 AB2 HIS A 526 TYR A 545 1 20 HELIX 12 AB3 PRO A 548 ILE A 553 5 6 HELIX 13 AB4 THR A 588 ARG A 596 1 9 HELIX 14 AB5 GLN A 613 GLY A 624 1 12 HELIX 15 AB6 ASP A 625 GLU A 634 1 10 HELIX 16 AB7 ASP A 637 GLY A 648 1 12 HELIX 17 AB8 PRO A 650 VAL A 654 5 5 HELIX 18 AB9 ASP A 655 TYR A 671 1 17 HELIX 19 AC1 SER A 674 ALA A 683 1 10 HELIX 20 AC2 PRO A 685 SER A 699 1 15 HELIX 21 AC3 PRO A 701 GLY A 718 1 18 HELIX 22 AC4 PRO A 731 ALA A 735 5 5 HELIX 23 AC5 VAL A 737 MET A 775 1 39 HELIX 24 AC6 LYS A 793 GLY A 809 1 17 HELIX 25 AC7 LEU A 828 GLU A 832 5 5 SHEET 1 AA1 4 GLU A 295 ALA A 297 0 SHEET 2 AA1 4 ARG A 331 ARG A 334 1 O VAL A 332 N ALA A 297 SHEET 3 AA1 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 AA1 4 PHE A 306 LEU A 311 -1 N PHE A 306 O ALA A 327 SHEET 1 AA2 2 ARG A 450 LEU A 451 0 SHEET 2 AA2 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 AA3 2 ARG A 563 ASN A 565 0 SHEET 2 AA3 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 AA4 4 ARG A 778 GLN A 782 0 SHEET 2 AA4 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 AA4 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 AA4 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 AA5 2 TYR A 719 GLU A 721 0 SHEET 2 AA5 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DA B 111 P DOC B 112 1555 1555 1.56 LINK OD2 ASP A 610 MG MG A 901 1555 1555 2.17 LINK OD1 ASP A 610 MN MN A 902 1555 1555 2.18 LINK O TYR A 611 MN MN A 902 1555 1555 2.23 LINK OD1 ASP A 785 MG MG A 901 1555 1555 2.27 LINK OD2 ASP A 785 MN MN A 902 1555 1555 1.97 LINK MG MG A 901 O3 HHZ A 903 1555 1555 2.40 LINK MG MG A 901 O HOH A1034 1555 1555 2.42 LINK MG MG A 901 O HOH A1078 1555 1555 2.32 LINK MN MN A 902 O3 HHZ A 903 1555 1555 2.21 LINK MN MN A 902 O6 HHZ A 903 1555 1555 2.05 LINK MN MN A 902 O8 HHZ A 903 1555 1555 2.13 LINK O6 DG B 107 MG MG B 201 1555 1555 3.00 LINK MG MG B 201 O HOH B 302 1555 1555 2.96 LINK MG MG B 201 O HOH B 311 1555 1555 2.59 CISPEP 1 TRP A 299 PRO A 300 0 6.18 CISPEP 2 ASP A 578 PRO A 579 0 0.24 SITE 1 AC1 7 ASP A 610 ASP A 785 MN A 902 HHZ A 903 SITE 2 AC1 7 HOH A1034 HOH A1078 DOC B 112 SITE 1 AC2 5 ASP A 610 TYR A 611 ASP A 785 MG A 901 SITE 2 AC2 5 HHZ A 903 SITE 1 AC3 24 ARG A 573 ASP A 610 TYR A 611 SER A 612 SITE 2 AC3 24 GLN A 613 ILE A 614 GLU A 615 HIS A 639 SITE 3 AC3 24 ARG A 659 LYS A 663 THR A 664 PHE A 667 SITE 4 AC3 24 ASP A 785 MG A 901 MN A 902 HOH A1038 SITE 5 AC3 24 HOH A1040 HOH A1078 HOH A1080 HOH A1136 SITE 6 AC3 24 DOC B 112 HOH B 308 DT C 204 DG C 205 SITE 1 AC4 5 TYR A 545 PRO A 579 ASN A 580 ASN A 583 SITE 2 AC4 5 DC C 209 SITE 1 AC5 4 DG B 107 DG B 108 HOH B 302 HOH B 311 SITE 1 AC6 7 HOH B 302 DT C 206 DG C 207 DG C 208 SITE 2 AC6 7 HOH C 408 HOH C 415 HOH C 420 SITE 1 AC7 2 DG C 213 DG C 214 CRYST1 109.359 109.359 90.893 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009144 0.005279 0.000000 0.00000 SCALE2 0.000000 0.010559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011002 0.00000