HEADER HYDROLASE 06-DEC-18 6Q50 TITLE STRUCTURE OF MPT-4, A MANNOSE PHOSPHORYLASE FROM LEISHMANIA MEXICANA, TITLE 2 IN COMPLEX WITH PHOSPHATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MPT-4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA (STRAIN SOURCE 3 MHOM/GT/2001/U1103); SOURCE 4 ORGANISM_TAXID: 929439; SOURCE 5 STRAIN: MHOM/GT/2001/U1103; SOURCE 6 GENE: LMXM_10_1260; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS PHOSPHORYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.F.SOBALA,A.MALES,L.M.BASTIDAS,T.WARD,M.F.SERNEE,J.E.RALTON, AUTHOR 2 T.L.NERO,S.COBBOLD,J.KLOEHN,M.VIERA-LARA,L.STANTON,E.HANSSEN, AUTHOR 3 M.W.PARKER,S.J.WILLIAMS,M.J.MCCONVILLE,G.J.DAVIES REVDAT 3 24-JAN-24 6Q50 1 REMARK REVDAT 2 17-FEB-21 6Q50 1 LINK REVDAT 1 25-SEP-19 6Q50 0 JRNL AUTH M.F.SERNEE,J.E.RALTON,T.L.NERO,L.F.SOBALA,J.KLOEHN, JRNL AUTH 2 M.A.VIEIRA-LARA,S.A.COBBOLD,L.STANTON,D.E.V.PIRES,E.HANSSEN, JRNL AUTH 3 A.MALES,T.WARD,L.M.BASTIDAS,P.L.VAN DER PEET,M.W.PARKER, JRNL AUTH 4 D.B.ASCHER,S.J.WILLIAMS,G.J.DAVIES,M.J.MCCONVILLE JRNL TITL A FAMILY OF DUAL-ACTIVITY GLYCOSYLTRANSFERASE-PHOSPHORYLASES JRNL TITL 2 MEDIATES MANNOGEN TURNOVER AND VIRULENCE IN LEISHMANIA JRNL TITL 3 PARASITES. JRNL REF CELL HOST MICROBE V. 26 385 2019 JRNL REFN ESSN 1934-6069 JRNL PMID 31513773 JRNL DOI 10.1016/J.CHOM.2019.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3227 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2651 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2398 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3588 ; 1.742 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5575 ; 1.435 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ;14.669 ; 5.337 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;29.122 ;21.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;13.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3262 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 2.062 ; 2.213 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1285 ; 2.063 ; 2.210 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 2.954 ; 3.306 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 2.954 ; 3.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1364 ; 3.198 ; 2.630 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1362 ; 3.190 ; 2.627 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1973 ; 4.811 ; 3.808 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2998 ; 6.504 ;27.820 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2913 ; 6.385 ;27.043 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Q50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8.1-G1AFCA60C-RELEASE REMARK 200 -HOTFIX1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 67.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 1.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B4W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM PCTP PH 7.0, 25% W/V PEG 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.68300 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.48500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.68300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 SER A 313 REMARK 465 SER A 314 REMARK 465 LEU A 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 53 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 755 O HOH A 755 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 111 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 54.09 38.41 REMARK 500 ARG A 150 73.61 -155.51 REMARK 500 ILE A 183 -59.36 -121.48 REMARK 500 SER A 286 -33.11 -143.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 872 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 PO4 A 401 O1 133.1 REMARK 620 3 HOH A 509 O 111.0 84.7 REMARK 620 4 HOH A 511 O 55.5 88.9 150.8 REMARK 620 5 HOH A 660 O 60.3 159.8 105.1 90.4 REMARK 620 6 HOH A 703 O 58.7 118.1 52.3 107.8 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B4W RELATED DB: PDB REMARK 900 HOMOLOG FROM LEISHMANIA MAJOR DBREF 6Q50 A 1 315 UNP E9ANE0 E9ANE0_LEIMU 1 315 SEQADV 6Q50 MET A -20 UNP E9ANE0 INITIATING METHIONINE SEQADV 6Q50 GLY A -19 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 SER A -18 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 SER A -17 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -16 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -15 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -13 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -12 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -11 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A -10 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 SER A -9 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 SER A -8 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 GLY A -7 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 LEU A -6 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 VAL A -5 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 PRO A -4 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 ARG A -3 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 GLY A -2 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 SER A -1 UNP E9ANE0 EXPRESSION TAG SEQADV 6Q50 HIS A 0 UNP E9ANE0 EXPRESSION TAG SEQRES 1 A 335 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 335 LEU VAL PRO ARG GLY SER HIS MET LYS GLN THR LYS ALA SEQRES 3 A 335 SER PHE GLU ALA ASN LYS ARG VAL TYR GLU SER VAL LEU SEQRES 4 A 335 LEU THR PHE ARG GLY VAL ASP GLY TYR ASP VAL TYR ASN SEQRES 5 A 335 CYS SER VAL PRO PHE PHE TYR LYS GLY LYS MET HIS ILE SEQRES 6 A 335 TYR GLY ARG VAL GLU LYS ARG ASP ILE TRP ALA ALA SER SEQRES 7 A 335 HIS VAL ARG LEU PHE GLU GLU THR GLY LYS ASP GLU PHE SEQRES 8 A 335 THR VAL VAL PRO GLY PHE TYR PHE GLN LEU GLU ASP PRO SEQRES 9 A 335 TYR VAL ALA LYS ILE ASN ASN GLU MET ILE PHE GLY GLY SEQRES 10 A 335 THR HIS VAL ARG LYS ASP LYS GLN GLU ILE SER SER TYR SEQRES 11 A 335 TYR GLY TYR PHE TYR ARG GLY THR PRO ASP GLU LEU THR SEQRES 12 A 335 TYR PHE THR THR GLY PRO ASP CYS MET LYS ASP ILE ARG SEQRES 13 A 335 VAL LEU GLN LEU GLN ASP GLY ARG LEU GLY VAL PHE SER SEQRES 14 A 335 ARG PRO ARG VAL GLY CYS ARG ALA SER ILE GLY PHE VAL SEQRES 15 A 335 ILE LEU ASN SER ILE ASP GLU LEU GLY ALA GLU VAL ILE SEQRES 16 A 335 ALA LYS ALA PRO PRO LEU ASP ILE LEU SER GLU ASN THR SEQRES 17 A 335 TRP GLY GLY VAL ASN GLN ALA TYR LEU LEU SER SER GLY SEQRES 18 A 335 LYS VAL GLY CYS ILE GLY HIS TYR SER TYR GLU ASP THR SEQRES 19 A 335 ASP GLU GLN GLN GLN PRO GLN ARG VAL TYR VAL ASN TYR SEQRES 20 A 335 SER PHE VAL LEU ASP PRO GLN SER ARG ALA ILE ALA ASP SEQRES 21 A 335 ALA LYS ILE ILE GLY THR LYS SER CYS TYR PRO PRO CYS SEQRES 22 A 335 GLU PRO LYS VAL PRO PHE LEU ALA ASP CYS VAL PHE ALA SEQRES 23 A 335 SER GLY ILE VAL MET ARG SER ASP GLY ARG ALA ASP LEU SEQRES 24 A 335 TYR SER GLY VAL GLY ASP SER ARG GLU GLY ARG ILE THR SEQRES 25 A 335 ILE ASP TYR PRO PHE LYS VAL HIS GLY THR ILE ILE GLY SEQRES 26 A 335 ASP LEU ASN PHE PRO MET ALA SER SER LEU HET PO4 A 401 5 HET EDO A 402 4 HET NA A 403 1 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PO4 O4 P 3- FORMUL 3 EDO C2 H6 O2 FORMUL 4 NA NA 1+ FORMUL 5 HOH *373(H2 O) HELIX 1 AA1 MET A 1 LYS A 12 1 12 HELIX 2 AA2 SER A 166 LEU A 170 5 5 HELIX 3 AA3 GLY A 171 LYS A 177 1 7 HELIX 4 AA4 THR A 246 TYR A 250 5 5 HELIX 5 AA5 VAL A 257 ALA A 261 5 5 HELIX 6 AA6 PHE A 297 GLY A 301 5 5 SHEET 1 AA1 4 GLU A 16 LEU A 19 0 SHEET 2 AA1 4 ARG A 287 ILE A 293 -1 O ARG A 290 N VAL A 18 SHEET 3 AA1 4 ALA A 277 VAL A 283 -1 N LEU A 279 O ILE A 291 SHEET 4 AA1 4 VAL A 264 MET A 271 -1 N PHE A 265 O GLY A 282 SHEET 1 AA2 5 THR A 21 ARG A 23 0 SHEET 2 AA2 5 GLU A 70 PHE A 79 1 O PHE A 71 N ARG A 23 SHEET 3 AA2 5 HIS A 59 GLY A 67 -1 N GLU A 64 O THR A 72 SHEET 4 AA2 5 LYS A 42 GLU A 50 -1 N VAL A 49 O HIS A 59 SHEET 5 AA2 5 ASP A 29 TYR A 31 -1 N ASP A 29 O GLU A 50 SHEET 1 AA3 6 THR A 21 ARG A 23 0 SHEET 2 AA3 6 GLU A 70 PHE A 79 1 O PHE A 71 N ARG A 23 SHEET 3 AA3 6 HIS A 59 GLY A 67 -1 N GLU A 64 O THR A 72 SHEET 4 AA3 6 LYS A 42 GLU A 50 -1 N VAL A 49 O HIS A 59 SHEET 5 AA3 6 PHE A 37 TYR A 39 -1 N PHE A 37 O HIS A 44 SHEET 6 AA3 6 ASN A 308 PHE A 309 1 O PHE A 309 N PHE A 38 SHEET 1 AA4 4 GLU A 82 ILE A 89 0 SHEET 2 AA4 4 GLU A 92 ASP A 103 -1 O ILE A 94 N ALA A 87 SHEET 3 AA4 4 GLU A 106 THR A 118 -1 O TYR A 111 N HIS A 99 SHEET 4 AA4 4 GLU A 121 THR A 127 -1 O PHE A 125 N PHE A 114 SHEET 1 AA5 3 ARG A 136 GLN A 139 0 SHEET 2 AA5 3 LEU A 145 SER A 149 -1 O PHE A 148 N ARG A 136 SHEET 3 AA5 3 GLY A 160 LEU A 164 -1 O LEU A 164 N LEU A 145 SHEET 1 AA6 2 ARG A 152 VAL A 153 0 SHEET 2 AA6 2 ARG A 156 ALA A 157 -1 O ARG A 156 N VAL A 153 SHEET 1 AA7 4 TRP A 189 LEU A 197 0 SHEET 2 AA7 4 VAL A 203 THR A 214 -1 O ILE A 206 N GLN A 194 SHEET 3 AA7 4 PRO A 220 LEU A 231 -1 O TYR A 227 N GLY A 207 SHEET 4 AA7 4 ILE A 238 GLY A 245 -1 O ALA A 239 N VAL A 230 LINK OD2 ASP A 83 NA NA A 403 1555 1555 2.84 LINK O1 PO4 A 401 NA NA A 403 1555 1555 2.70 LINK NA NA A 403 O HOH A 509 1555 1555 3.07 LINK NA NA A 403 O HOH A 511 1555 1555 3.00 LINK NA NA A 403 O BHOH A 660 1555 1555 3.04 LINK NA NA A 403 O HOH A 703 1555 1555 2.98 SITE 1 AC1 10 LYS A 133 ASP A 134 ARG A 150 ARG A 152 SITE 2 AC1 10 TRP A 189 HIS A 208 TYR A 224 NA A 403 SITE 3 AC1 10 HOH A 509 HOH A 537 SITE 1 AC2 9 ASP A 83 TYR A 85 GLY A 97 THR A 98 SITE 2 AC2 9 ASP A 134 ARG A 136 HOH A 511 HOH A 546 SITE 3 AC2 9 HOH A 620 SITE 1 AC3 7 ASP A 83 LYS A 133 PO4 A 401 HOH A 509 SITE 2 AC3 7 HOH A 511 HOH A 660 HOH A 703 CRYST1 53.366 67.194 96.970 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010312 0.00000