HEADER RNA BINDING PROTEIN 07-DEC-18 6Q5A TITLE CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM HOMINIS CPSF3 IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CPSF3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM HOMINIS; SOURCE 3 ORGANISM_TAXID: 237895; SOURCE 4 GENE: CHUDEA8_460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL CODON PLUS KEYWDS MRNA PROCESSING FACTOR, METALLO-BETA-LACTAMASE, BETA-CASP, OXABOROLE- KEYWDS 2 INHIBITOR, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PALENCIA,C.SWALE REVDAT 3 24-JAN-24 6Q5A 1 REMARK REVDAT 2 30-SEP-20 6Q5A 1 JRNL LINK REVDAT 1 20-NOV-19 6Q5A 0 JRNL AUTH C.SWALE,A.BOUGDOUR,A.GNAHOUI-DAVID,J.TOTTEY,S.GEORGEAULT, JRNL AUTH 2 F.LAURENT,A.PALENCIA,M.A.HAKIMI JRNL TITL METAL-CAPTURED INHIBITION OF PRE-MRNA PROCESSING ACTIVITY BY JRNL TITL 2 CPSF3 CONTROLS CRYPTOSPORIDIUM INFECTION. JRNL REF SCI TRANSL MED V. 11 2019 JRNL REFN ESSN 1946-6242 JRNL PMID 31694928 JRNL DOI 10.1126/SCITRANSLMED.AAX7161 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 78391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4197 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 3.08000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.267 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3870 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3578 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5269 ; 1.293 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8419 ; 0.919 ; 1.643 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;31.480 ;21.837 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;13.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4365 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 707 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1901 ; 2.622 ; 2.373 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1900 ; 2.619 ; 2.371 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2390 ; 3.240 ; 3.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2391 ; 3.239 ; 3.576 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1969 ; 3.294 ; 2.750 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1970 ; 3.295 ; 2.751 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2856 ; 4.133 ; 3.972 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4530 ; 8.940 ;31.251 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4376 ; 6.728 ;30.190 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7446 ; 7.283 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 231 ;65.533 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7591 ;27.600 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Q5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82588 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q55 REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% (V/V) POLY ETHYLENE GLYCOL 4000, REMARK 280 10% (V/V) ISOPROPANOL, 100 MM HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.55333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.33000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.77667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 198.88333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 159.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 79.55333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.77667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 119.33000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 198.88333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 IPA A 505 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 904 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 MET A 12 REMARK 465 THR A 13 REMARK 465 GLU A 14 REMARK 465 GLN A 15 REMARK 465 THR A 16 REMARK 465 ILE A 17 REMARK 465 ASP A 18 REMARK 465 ILE A 19 REMARK 465 PRO A 481 REMARK 465 THR A 482 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LEU A 404 CG CD1 CD2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 812 O HOH A 986 1.78 REMARK 500 O HOH A 1017 O HOH A 1061 1.98 REMARK 500 O HOH A 921 O HOH A 933 2.12 REMARK 500 O HOH A 707 O HOH A 987 2.14 REMARK 500 O HOH A 987 O HOH A 990 2.15 REMARK 500 O HOH A 986 O HOH A 988 2.16 REMARK 500 O HIS A 235 O HOH A 601 2.16 REMARK 500 NH2 ARG A 448 OE2 GLU A 471 2.16 REMARK 500 OD2 ASP A 343 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 39 108.23 -171.20 REMARK 500 ASP A 52 163.60 70.21 REMARK 500 CYS A 53 68.41 -159.47 REMARK 500 ARG A 164 -2.44 73.60 REMARK 500 HIS A 181 -81.02 76.93 REMARK 500 ASN A 362 -161.68 -172.25 REMARK 500 LEU A 395 36.21 -71.57 REMARK 500 LYS A 397 17.94 88.39 REMARK 500 LEU A 404 -164.30 68.75 REMARK 500 GLU A 406 -135.04 51.63 REMARK 500 LYS A 407 77.25 49.15 REMARK 500 LEU A 473 -9.18 77.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 238 0.08 SIDE CHAIN REMARK 500 ARG A 241 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1068 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A1069 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH A1070 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A1071 DISTANCE = 6.23 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 509 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 83 NE2 REMARK 620 2 HIS A 85 ND1 91.4 REMARK 620 3 HIS A 181 NE2 94.2 95.3 REMARK 620 4 ASP A 202 OD2 93.8 170.4 92.3 REMARK 620 5 HOH A 705 O 101.0 96.2 160.7 75.0 REMARK 620 6 HOH A 900 O 178.7 89.9 85.9 84.9 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD2 REMARK 620 2 HIS A 88 NE2 83.2 REMARK 620 3 ASP A 202 OD2 164.0 91.7 REMARK 620 4 HIS A 445 NE2 92.3 100.5 103.5 REMARK 620 5 HOH A 705 O 86.5 92.6 78.6 166.7 REMARK 620 6 HOH A 812 O 98.9 172.0 84.2 87.2 79.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 137 OE1 REMARK 620 2 HOH A1026 O 136.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Q55 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH INHIBITOR CMP61 DBREF1 6Q5A A 1 482 UNP A0A0S4TJL4_CRYHO DBREF2 6Q5A A A0A0S4TJL4 1 482 SEQADV 6Q5A GLY A 0 UNP A0A0S4TJL EXPRESSION TAG SEQRES 1 A 483 GLY MET SER TYR ASN GLU VAL VAL LEU ASP SER GLY MET SEQRES 2 A 483 THR GLU GLN THR ILE ASP ILE GLU GLY GLU THR LEU TYR SEQRES 3 A 483 ILE GLN VAL LEU GLY ALA GLY CYS GLU VAL GLY ARG SER SEQRES 4 A 483 CYS VAL VAL VAL SER PHE LYS GLY ARG SER VAL MET PHE SEQRES 5 A 483 ASP CYS GLY ILE HIS PRO ALA PHE SER GLY ILE GLY SER SEQRES 6 A 483 LEU PRO VAL PHE ASP ALA ILE ASP VAL SER THR ILE ASP SEQRES 7 A 483 LEU CYS LEU ILE THR HIS PHE HIS LEU ASP HIS SER GLY SEQRES 8 A 483 ALA THR PRO TYR PHE VAL SER LEU THR ASP PHE ASN GLY SEQRES 9 A 483 LYS VAL PHE MET THR GLU PRO THR LYS ALA ILE CYS LYS SEQRES 10 A 483 LEU VAL TRP GLN ASP TYR ALA ARG VAL ASN LYS PHE SER SEQRES 11 A 483 ALA GLY SER ILE GLU SER GLU GLU ALA PRO LEU SER SER SEQRES 12 A 483 ILE ASN LEU TYR THR GLU LYS ASP ILE GLU LYS ALA ILE SEQRES 13 A 483 ASN MET THR GLU ILE ILE ASP PHE ARG GLN GLN VAL GLU SEQRES 14 A 483 LEU ASP GLY ILE ARG PHE SER CYS TYR GLY ALA GLY HIS SEQRES 15 A 483 VAL LEU GLY ALA CYS MET PHE LEU VAL GLU ILE GLY GLY SEQRES 16 A 483 VAL ARG ILE LEU TYR THR GLY ASP TYR SER ARG GLU ASP SEQRES 17 A 483 ASP ARG HIS VAL PRO ARG ALA GLU ILE PRO PRO ILE ASP SEQRES 18 A 483 VAL HIS VAL LEU ILE CYS GLU SER THR TYR GLY THR ARG SEQRES 19 A 483 ILE HIS GLU PRO ARG ILE ASP ARG GLU LYS ARG PHE LEU SEQRES 20 A 483 GLY GLY VAL GLN SER ILE ILE THR ARG LYS GLY LYS CYS SEQRES 21 A 483 LEU LEU PRO VAL PHE ALA ILE GLY ARG ALA GLN GLU LEU SEQRES 22 A 483 LEU LEU ILE LEU GLU GLU HIS TRP SER ARG THR PRO SER SEQRES 23 A 483 ILE GLN ASN VAL PRO ILE ILE TYR ALA SER PRO MET SER SEQRES 24 A 483 ILE LYS CYS MET ARG VAL PHE GLU THR TYR ILE ASN GLN SEQRES 25 A 483 CYS GLY GLU SER VAL ARG ARG GLN ALA ASP LEU GLY ILE SEQRES 26 A 483 ASN PRO PHE GLN PHE ASN TYR ILE LYS THR VAL ASN SER SEQRES 27 A 483 LEU ASN GLU ILE LYS ASP ILE ILE TYR ASN PRO GLY PRO SEQRES 28 A 483 CYS VAL VAL MET ALA ALA PRO GLY MET LEU GLN ASN GLY SEQRES 29 A 483 THR SER ARG ASP ILE PHE GLU ILE TRP ALA PRO ASP LYS SEQRES 30 A 483 ARG ASN GLY ILE ILE LEU THR GLY TYR ALA VAL ARG GLY SEQRES 31 A 483 THR PRO ALA TYR GLU LEU ARG LYS GLU PRO GLU MET ILE SEQRES 32 A 483 GLN LEU GLY GLU LYS VAL ILE PRO MET ARG ALA LYS PHE SEQRES 33 A 483 ASP GLN ILE SER PHE SER ALA HIS SER ASP PHE THR GLN SEQRES 34 A 483 THR GLN GLU PHE ILE ASN SER LEU LYS VAL PRO ASN VAL SEQRES 35 A 483 ILE LEU VAL HIS GLY GLU ARG GLY GLU CYS LYS LYS LEU SEQRES 36 A 483 LYS ASP LYS LEU LYS GLU LEU SER PRO SER LEU ALA VAL SEQRES 37 A 483 PHE ALA PRO GLU ILE LEU GLN LYS VAL GLY LEU THR PHE SEQRES 38 A 483 PRO THR HET ZN A 501 1 HET ZN A 502 1 HET GOL A 503 6 HET GOL A 504 6 HET IPA A 505 4 HET IPA A 506 4 HET IPA A 507 4 HET MG A 508 1 HET PG4 A 509 8 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 IPA 3(C3 H8 O) FORMUL 9 MG MG 2+ FORMUL 10 PG4 C8 H18 O5 FORMUL 11 HOH *471(H2 O) HELIX 1 AA1 SER A 60 LEU A 65 5 6 HELIX 2 AA2 VAL A 67 ILE A 71 5 5 HELIX 3 AA3 ASP A 72 ILE A 76 5 5 HELIX 4 AA4 HIS A 85 GLY A 90 1 6 HELIX 5 AA5 ALA A 91 SER A 97 1 7 HELIX 6 AA6 THR A 108 ALA A 123 1 16 HELIX 7 AA7 THR A 147 MET A 157 1 11 HELIX 8 AA8 PRO A 237 ARG A 255 1 19 HELIX 9 AA9 GLY A 267 THR A 283 1 17 HELIX 10 AB1 PRO A 284 GLN A 287 5 4 HELIX 11 AB2 SER A 295 TYR A 308 1 14 HELIX 12 AB3 ILE A 309 CYS A 312 5 4 HELIX 13 AB4 GLY A 313 LEU A 322 1 10 HELIX 14 AB5 SER A 337 GLU A 340 5 4 HELIX 15 AB6 ILE A 341 ASN A 347 1 7 HELIX 16 AB7 ASN A 362 ALA A 373 1 12 HELIX 17 AB8 THR A 390 LEU A 395 1 6 HELIX 18 AB9 ASP A 425 LEU A 436 1 12 HELIX 19 AC1 GLU A 447 SER A 462 1 16 SHEET 1 AA1 7 THR A 158 ILE A 160 0 SHEET 2 AA1 7 LYS A 104 MET A 107 1 N VAL A 105 O GLU A 159 SHEET 3 AA1 7 LEU A 78 LEU A 80 1 N CYS A 79 O LYS A 104 SHEET 4 AA1 7 ARG A 47 PHE A 51 1 N MET A 50 O LEU A 78 SHEET 5 AA1 7 CYS A 39 PHE A 44 -1 N VAL A 40 O PHE A 51 SHEET 6 AA1 7 LEU A 24 GLY A 30 -1 N GLN A 27 O VAL A 41 SHEET 7 AA1 7 LYS A 475 LEU A 478 -1 O LEU A 478 N LEU A 24 SHEET 1 AA2 7 VAL A 167 LEU A 169 0 SHEET 2 AA2 7 ILE A 172 GLY A 178 -1 O ILE A 172 N LEU A 169 SHEET 3 AA2 7 CYS A 186 ILE A 192 -1 O GLU A 191 N ARG A 173 SHEET 4 AA2 7 VAL A 195 TYR A 199 -1 O TYR A 199 N PHE A 188 SHEET 5 AA2 7 VAL A 223 GLU A 227 1 O ILE A 225 N LEU A 198 SHEET 6 AA2 7 ASN A 440 VAL A 444 1 O ILE A 442 N LEU A 224 SHEET 7 AA2 7 ALA A 466 PHE A 468 1 O PHE A 468 N LEU A 443 SHEET 1 AA3 6 ILE A 332 VAL A 335 0 SHEET 2 AA3 6 ILE A 291 ALA A 294 1 N ILE A 291 O LYS A 333 SHEET 3 AA3 6 CYS A 351 ALA A 355 1 O MET A 354 N ILE A 292 SHEET 4 AA3 6 LYS A 258 PRO A 262 1 N LEU A 261 O VAL A 353 SHEET 5 AA3 6 GLY A 379 LEU A 382 1 O GLY A 379 N LYS A 258 SHEET 6 AA3 6 LYS A 414 GLN A 417 1 O ASP A 416 N LEU A 382 SHEET 1 AA4 2 GLU A 400 ILE A 402 0 SHEET 2 AA4 2 VAL A 408 PRO A 410 -1 O ILE A 409 N MET A 401 LINK NE2 HIS A 83 ZN ZN A 502 1555 1555 2.22 LINK ND1 HIS A 85 ZN ZN A 502 1555 1555 2.15 LINK OD2 ASP A 87 ZN ZN A 501 1555 1555 2.26 LINK NE2 HIS A 88 ZN ZN A 501 1555 1555 2.13 LINK OE1 GLU A 137 MG MG A 508 1555 1555 2.66 LINK NE2 HIS A 181 ZN ZN A 502 1555 1555 2.15 LINK OD2 ASP A 202 ZN ZN A 501 1555 1555 2.21 LINK OD2 ASP A 202 ZN ZN A 502 1555 1555 2.43 LINK NE2 HIS A 445 ZN ZN A 501 1555 1555 2.15 LINK ZN ZN A 501 O HOH A 705 1555 1555 2.11 LINK ZN ZN A 501 O HOH A 812 1555 1555 2.20 LINK ZN ZN A 502 O HOH A 705 1555 1555 2.03 LINK ZN ZN A 502 O HOH A 900 1555 1555 2.22 LINK MG MG A 508 O HOH A1026 1555 1555 2.76 CISPEP 1 ALA A 356 PRO A 357 0 -3.76 SITE 1 AC1 7 ASP A 87 HIS A 88 ASP A 202 HIS A 445 SITE 2 AC1 7 ZN A 502 HOH A 705 HOH A 812 SITE 1 AC2 7 HIS A 83 HIS A 85 HIS A 181 ASP A 202 SITE 2 AC2 7 ZN A 501 HOH A 705 HOH A 900 SITE 1 AC3 8 GLN A 166 ARG A 173 PHE A 174 SER A 175 SITE 2 AC3 8 LEU A 189 GLU A 191 ARG A 196 HOH A 859 SITE 1 AC4 7 ARG A 196 ASP A 220 VAL A 221 HIS A 222 SITE 2 AC4 7 LYS A 437 HOH A 650 HOH A 905 SITE 1 AC5 3 GLN A 474 LYS A 475 HOH A1029 SITE 1 AC6 8 LYS A 45 ARG A 47 ILE A 234 PRO A 237 SITE 2 AC6 8 HOH A 601 HOH A 665 HOH A1013 HOH A1059 SITE 1 AC7 3 LYS A 459 ALA A 466 VAL A 467 SITE 1 AC8 3 GLU A 137 GLY A 358 HOH A1026 SITE 1 AC9 6 PHE A 468 LYS A 475 VAL A 476 GLY A 477 SITE 2 AC9 6 HOH A 853 HOH A1030 CRYST1 90.360 90.360 238.660 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011067 0.006389 0.000000 0.00000 SCALE2 0.000000 0.012779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004190 0.00000