HEADER TRANSFERASE 13-DEC-18 6Q7B TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 THE NVP-BHG712 DERIVATIVE ATDL09 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,A.TROESTER,K.WITT,V.L.LINHARD,S.L.GANDE,K.SAXENA, AUTHOR 2 H.SCHWALBE REVDAT 2 24-JAN-24 6Q7B 1 REMARK REVDAT 1 15-JAN-20 6Q7B 0 JRNL AUTH A.TROESTER,D.KUDLINZKI,K.SAXENA,S.GANDE,H.SCHWALBE JRNL TITL EFFECTS OF NVP-BHG712 CHEMICAL MODIFICATIONS ON EPHA2 JRNL TITL 2 BINDING AND AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3318: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 123523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.690 REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1164 - 2.4878 0.95 8679 149 0.1439 0.1570 REMARK 3 2 2.4878 - 1.9747 0.95 8579 147 0.1556 0.1743 REMARK 3 3 1.9747 - 1.7251 0.93 8346 143 0.1599 0.1865 REMARK 3 4 1.7251 - 1.5674 0.94 8451 145 0.1652 0.1908 REMARK 3 5 1.5674 - 1.4551 0.91 8263 142 0.1833 0.1898 REMARK 3 6 1.4551 - 1.3693 0.91 8166 140 0.2102 0.2482 REMARK 3 7 1.3693 - 1.3007 0.91 8161 141 0.2346 0.2543 REMARK 3 8 1.3007 - 1.2441 0.91 8263 141 0.2568 0.2713 REMARK 3 9 1.2441 - 1.1962 0.88 7907 136 0.2754 0.2716 REMARK 3 10 1.1962 - 1.1549 0.89 8009 138 0.2890 0.2676 REMARK 3 11 1.1549 - 1.1188 0.89 8002 137 0.3175 0.3443 REMARK 3 12 1.1188 - 1.0868 0.88 7976 137 0.3480 0.3969 REMARK 3 13 1.0868 - 1.0582 0.87 7785 134 0.4098 0.4434 REMARK 3 14 1.0582 - 1.0324 0.85 7686 132 0.4288 0.4337 REMARK 3 15 1.0324 - 1.0089 0.80 7165 123 0.4566 0.4712 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2421 REMARK 3 ANGLE : 1.014 3283 REMARK 3 CHIRALITY : 0.085 352 REMARK 3 PLANARITY : 0.006 421 REMARK 3 DIHEDRAL : 16.017 1491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 599 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): -87.9067 -29.0628 84.6480 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.1561 REMARK 3 T33: 0.2333 T12: -0.0138 REMARK 3 T13: -0.0094 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.2062 L22: 0.1073 REMARK 3 L33: 0.3020 L12: 0.0359 REMARK 3 L13: 0.1456 L23: -0.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.2360 S13: 0.0953 REMARK 3 S21: -0.0607 S22: 0.0736 S23: 0.0173 REMARK 3 S31: 0.0713 S32: -0.1377 S33: 0.0534 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 627 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.7994 -28.9764 82.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.1237 REMARK 3 T33: 0.1642 T12: -0.0377 REMARK 3 T13: 0.0264 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.1591 L22: 0.1698 REMARK 3 L33: 0.1217 L12: -0.0168 REMARK 3 L13: 0.0300 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: 0.0629 S13: -0.0725 REMARK 3 S21: -0.1257 S22: 0.1468 S23: -0.1563 REMARK 3 S31: 0.1379 S32: -0.1475 S33: -0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 654 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -92.8962 -25.2179 94.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.1451 REMARK 3 T33: 0.2269 T12: 0.0099 REMARK 3 T13: -0.0060 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.0552 L22: 0.0219 REMARK 3 L33: 0.0231 L12: 0.0232 REMARK 3 L13: 0.0180 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.0323 S13: 0.0766 REMARK 3 S21: 0.0048 S22: 0.0327 S23: 0.2614 REMARK 3 S31: -0.0995 S32: -0.0530 S33: 0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.0461 -11.4965 84.1246 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1051 REMARK 3 T33: 0.1044 T12: -0.0014 REMARK 3 T13: -0.0005 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1838 L22: 0.3932 REMARK 3 L33: 0.2382 L12: 0.1273 REMARK 3 L13: -0.0261 L23: -0.0381 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0169 S13: -0.0065 REMARK 3 S21: -0.0362 S22: 0.0065 S23: 0.0086 REMARK 3 S31: 0.0272 S32: 0.0015 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 756 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): -78.5204 -4.2828 100.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1272 REMARK 3 T33: 0.1040 T12: 0.0021 REMARK 3 T13: -0.0006 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.3147 L22: 0.2746 REMARK 3 L33: 0.1846 L12: 0.0246 REMARK 3 L13: 0.1346 L23: -0.0234 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -0.0623 S13: -0.0235 REMARK 3 S21: 0.0228 S22: 0.0036 S23: -0.0268 REMARK 3 S31: 0.0402 S32: 0.0361 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.6589 7.6391 92.9641 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.1218 REMARK 3 T33: 0.1119 T12: 0.0058 REMARK 3 T13: -0.0053 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.2277 L22: 0.4250 REMARK 3 L33: 0.2292 L12: -0.0501 REMARK 3 L13: 0.1036 L23: -0.1149 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.0505 S13: 0.0490 REMARK 3 S21: -0.0139 S22: -0.0041 S23: 0.0194 REMARK 3 S31: -0.0192 S32: 0.0002 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.9926 15.0262 90.5021 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.1908 REMARK 3 T33: 0.2870 T12: -0.0026 REMARK 3 T13: -0.0158 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 0.0865 L22: 0.0031 REMARK 3 L33: 0.0199 L12: 0.0100 REMARK 3 L13: -0.0459 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.0901 S13: -0.0309 REMARK 3 S21: -0.0602 S22: -0.0074 S23: -0.2654 REMARK 3 S31: -0.0004 S32: 0.0780 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.009 REMARK 200 RESOLUTION RANGE LOW (A) : 31.102 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 7.070 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.74 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5 % MPD_PEG1000_PEG3350 REMARK 280 (PRECIPITANT MIX 4 MORPHEUS), 100 MM MORPHEUS AMINO ACIDS MIX, REMARK 280 100 MM BIS-TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.40350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 743 O HOH A 1101 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 890 CG - CD - NE ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 738 -20.54 81.87 REMARK 500 TRP A 819 -129.57 53.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HO5 A 1001 DBREF 6Q7B A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 6Q7B GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET HO5 A1001 38 HETNAM HO5 3-[[4-IMIDAZOL-1-YL-6-[(3~{S})-3-OXIDANYLPYRROLIDIN-1- HETNAM 2 HO5 YL]-1,3,5-TRIAZIN-2-YL]AMINO]-4-METHYL-~{N}-[3- HETNAM 3 HO5 (TRIFLUOROMETHYL)PHENYL]BENZAMIDE FORMUL 2 HO5 C25 H23 F3 N8 O2 FORMUL 3 HOH *315(H2 O) HELIX 1 AA1 GLN A 599 LYS A 603 5 5 HELIX 2 AA2 HIS A 609 SER A 611 5 3 HELIX 3 AA3 THR A 653 PHE A 670 1 18 HELIX 4 AA4 ALA A 699 GLU A 706 1 8 HELIX 5 AA5 SER A 712 MET A 733 1 22 HELIX 6 AA6 ALA A 741 ARG A 743 5 3 HELIX 7 AA7 PRO A 780 THR A 784 5 5 HELIX 8 AA8 ALA A 785 ARG A 792 1 8 HELIX 9 AA9 THR A 795 THR A 812 1 18 HELIX 10 AB1 SER A 822 ASP A 832 1 11 HELIX 11 AB2 PRO A 843 TRP A 854 1 12 HELIX 12 AB3 GLU A 857 ARG A 861 5 5 HELIX 13 AB4 LYS A 863 ALA A 877 1 15 HELIX 14 AB5 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 ALA A 621 0 SHEET 2 AA1 5 GLU A 626 LEU A 632 -1 O LYS A 629 N LYS A 617 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N ILE A 682 O MET A 689 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -2.09 SITE 1 AC1 17 ALA A 644 GLU A 663 MET A 667 PHE A 670 SITE 2 AC1 17 ILE A 675 ILE A 676 THR A 692 TYR A 694 SITE 3 AC1 17 MET A 695 TYR A 735 HIS A 737 LEU A 746 SITE 4 AC1 17 VAL A 755 SER A 756 ASP A 757 PHE A 758 SITE 5 AC1 17 HOH A1260 CRYST1 32.800 106.807 40.402 90.00 108.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030488 0.000000 0.010343 0.00000 SCALE2 0.000000 0.009363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026137 0.00000