HEADER TRANSFERASE 13-DEC-18 6Q7D TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 THE NVP-BHG712 DERIVATIVE ATDL13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,A.TROESTER,K.WITT,V.L.LINHARD,S.L.GANDE,K.SAXENA, AUTHOR 2 H.SCHWALBE REVDAT 2 24-JAN-24 6Q7D 1 REMARK REVDAT 1 15-JAN-20 6Q7D 0 JRNL AUTH A.TROESTER,D.KUDLINZKI,K.SAXENA,S.GANDE,H.SCHWALBE JRNL TITL EFFECTS OF NVP-BHG712 CHEMICAL MODIFICATIONS ON EPHA2 JRNL TITL 2 BINDING AND AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3318: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 140587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1663 - 2.4119 0.99 9935 149 0.1548 0.1878 REMARK 3 2 2.4119 - 1.9144 0.99 9855 149 0.1642 0.1831 REMARK 3 3 1.9144 - 1.6724 0.98 9786 147 0.1660 0.1808 REMARK 3 4 1.6724 - 1.5195 0.98 9763 147 0.1605 0.1778 REMARK 3 5 1.5195 - 1.4106 0.97 9595 145 0.1794 0.1875 REMARK 3 6 1.4106 - 1.3274 0.96 9604 144 0.1996 0.2186 REMARK 3 7 1.3274 - 1.2610 0.95 9456 143 0.2169 0.2425 REMARK 3 8 1.2610 - 1.2061 0.95 9432 142 0.2361 0.2410 REMARK 3 9 1.2061 - 1.1596 0.94 9388 141 0.2530 0.2463 REMARK 3 10 1.1596 - 1.1196 0.94 9310 141 0.2786 0.2787 REMARK 3 11 1.1196 - 1.0846 0.93 9267 139 0.3129 0.3068 REMARK 3 12 1.0846 - 1.0536 0.93 9204 139 0.3510 0.3290 REMARK 3 13 1.0536 - 1.0259 0.92 9132 138 0.3945 0.3779 REMARK 3 14 1.0259 - 1.0008 0.89 8891 133 0.4199 0.4019 REMARK 3 15 1.0008 - 0.9781 0.59 5886 86 0.4548 0.4183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2473 REMARK 3 ANGLE : 1.167 3362 REMARK 3 CHIRALITY : 0.088 356 REMARK 3 PLANARITY : 0.006 436 REMARK 3 DIHEDRAL : 18.530 1528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 600 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.5343 -29.3462 81.9043 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.1853 REMARK 3 T33: 0.3172 T12: -0.0592 REMARK 3 T13: 0.0176 T23: -0.0890 REMARK 3 L TENSOR REMARK 3 L11: 0.0404 L22: 0.1275 REMARK 3 L33: 0.2961 L12: 0.0329 REMARK 3 L13: 0.0580 L23: -0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.0815 S13: 0.3172 REMARK 3 S21: -0.0266 S22: 0.0802 S23: 0.0791 REMARK 3 S31: 0.1654 S32: -0.1616 S33: 0.0254 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 619 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.1948 -28.8405 84.9705 REMARK 3 T TENSOR REMARK 3 T11: 0.2575 T22: 0.1408 REMARK 3 T33: 0.1959 T12: -0.0332 REMARK 3 T13: 0.0238 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.1817 L22: 0.1894 REMARK 3 L33: 0.0914 L12: -0.0635 REMARK 3 L13: -0.1325 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.0564 S13: -0.1304 REMARK 3 S21: -0.0768 S22: 0.1226 S23: -0.1569 REMARK 3 S31: 0.1920 S32: 0.0496 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 654 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -92.3118 -25.3826 94.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.1488 REMARK 3 T33: 0.2734 T12: 0.0123 REMARK 3 T13: 0.0017 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.0709 L22: 0.0305 REMARK 3 L33: 0.0065 L12: 0.0100 REMARK 3 L13: 0.0102 L23: 0.0061 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.0814 S13: 0.0207 REMARK 3 S21: 0.1302 S22: 0.0660 S23: 0.3820 REMARK 3 S31: -0.0446 S32: 0.0274 S33: 0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -82.0209 -16.0001 82.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1096 REMARK 3 T33: 0.1186 T12: -0.0076 REMARK 3 T13: -0.0056 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2543 L22: 0.2538 REMARK 3 L33: 0.5191 L12: 0.0108 REMARK 3 L13: -0.1599 L23: -0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.0873 S13: -0.0271 REMARK 3 S21: -0.1076 S22: 0.0237 S23: -0.0022 REMARK 3 S31: 0.1013 S32: 0.0040 S33: -0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -85.2631 -6.1511 86.5783 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.1143 REMARK 3 T33: 0.0994 T12: 0.0020 REMARK 3 T13: 0.0008 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.3304 L22: 0.4403 REMARK 3 L33: 0.2063 L12: 0.0288 REMARK 3 L13: -0.0833 L23: 0.2679 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0365 S13: -0.0187 REMARK 3 S21: -0.0390 S22: 0.0160 S23: 0.0254 REMARK 3 S31: 0.0317 S32: -0.0359 S33: 0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 756 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.1467 -8.5537 103.5164 REMARK 3 T TENSOR REMARK 3 T11: 0.1261 T22: 0.1547 REMARK 3 T33: 0.1061 T12: -0.0023 REMARK 3 T13: -0.0058 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0539 L22: 0.1235 REMARK 3 L33: 0.0890 L12: 0.0586 REMARK 3 L13: -0.0210 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.1070 S13: -0.0419 REMARK 3 S21: 0.0342 S22: -0.0154 S23: -0.0482 REMARK 3 S31: 0.0496 S32: 0.0255 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 796 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.4663 -1.0874 99.1181 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1420 REMARK 3 T33: 0.1011 T12: 0.0129 REMARK 3 T13: -0.0045 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.1788 L22: 0.4869 REMARK 3 L33: 0.2404 L12: -0.0219 REMARK 3 L13: -0.0569 L23: 0.0385 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.1118 S13: -0.0247 REMARK 3 S21: 0.0201 S22: 0.0198 S23: -0.0498 REMARK 3 S31: 0.0467 S32: 0.0885 S33: -0.0046 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 863 ) REMARK 3 ORIGIN FOR THE GROUP (A): -81.2147 6.9540 98.5074 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1309 REMARK 3 T33: 0.1237 T12: 0.0056 REMARK 3 T13: -0.0032 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.0991 L22: 0.3192 REMARK 3 L33: 0.2709 L12: -0.1181 REMARK 3 L13: 0.1515 L23: -0.0668 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.1350 S13: 0.0707 REMARK 3 S21: 0.0334 S22: 0.0074 S23: -0.0044 REMARK 3 S31: -0.0268 S32: 0.0078 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 864 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -88.5984 8.2294 83.8027 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.1310 REMARK 3 T33: 0.1517 T12: 0.0092 REMARK 3 T13: -0.0227 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.1205 L22: 0.1795 REMARK 3 L33: 0.2376 L12: -0.1259 REMARK 3 L13: 0.0800 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.1236 S13: 0.1482 REMARK 3 S21: -0.0275 S22: 0.0212 S23: 0.1940 REMARK 3 S31: -0.2394 S32: -0.1712 S33: -0.0736 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.3797 15.0054 90.7656 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.2872 REMARK 3 T33: 0.4408 T12: -0.0241 REMARK 3 T13: 0.0201 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.0227 L22: 0.0483 REMARK 3 L33: 0.0696 L12: 0.0086 REMARK 3 L13: -0.0436 L23: -0.0193 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: 0.0948 S13: 0.0414 REMARK 3 S21: -0.2571 S22: 0.0272 S23: -0.5666 REMARK 3 S31: -0.0562 S32: 0.3642 S33: -0.0073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141511 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.978 REMARK 200 RESOLUTION RANGE LOW (A) : 36.142 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.690 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % PEG 3350, 100 MM MORPHEUS AMINO REMARK 280 ACIDS MIX, 100 MM MORPHEUS BUFFER SYSTEM 3 (TRIS/BICINE), PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.58000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 852 CG1 VAL A 891 1455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 782 CG - CD - NE ANGL. DEV. = -29.2 DEGREES REMARK 500 ARG A 890 CG - CD - NE ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 624 67.55 -153.00 REMARK 500 ARG A 738 -11.92 80.18 REMARK 500 ASP A 739 40.43 -144.68 REMARK 500 TRP A 819 -128.82 48.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1430 DISTANCE = 6.16 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HOT A 1001 DBREF 6Q7D A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 6Q7D GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET HOT A1001 39 HETNAM HOT 3-[[4-IMIDAZOL-1-YL-6-(4-OXIDANYLPIPERIDIN-1-YL)-1,3,5- HETNAM 2 HOT TRIAZIN-2-YL]AMINO]-4-METHYL-~{N}-[3- HETNAM 3 HOT (TRIFLUOROMETHYL)PHENYL]BENZAMIDE FORMUL 2 HOT C26 H25 F3 N8 O2 FORMUL 3 HOH *330(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 ASP A 832 1 11 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 GLY A 622 0 SHEET 2 AA1 5 GLY A 625 LEU A 632 -1 O GLY A 625 N GLY A 622 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -2.58 SITE 1 AC1 20 LYS A 603 ILE A 619 GLY A 620 ALA A 621 SITE 2 AC1 20 VAL A 627 ALA A 644 GLU A 663 MET A 667 SITE 3 AC1 20 PHE A 670 ILE A 675 ILE A 676 THR A 692 SITE 4 AC1 20 TYR A 694 MET A 695 TYR A 735 LEU A 746 SITE 5 AC1 20 VAL A 755 SER A 756 ASP A 757 PHE A 758 CRYST1 32.725 107.160 40.463 90.00 108.42 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030558 0.000000 0.010177 0.00000 SCALE2 0.000000 0.009332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026049 0.00000