HEADER TRANSFERASE 13-DEC-18 6Q7E TITLE CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH TITLE 2 THE NVP-BHG712 DERIVATIVE ATDL14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, PROTEIN TYROSINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,A.TROESTER,K.WITT,V.L.LINHARD,S.L.GANDE,K.SAXENA, AUTHOR 2 H.SCHWALBE REVDAT 2 24-JAN-24 6Q7E 1 REMARK REVDAT 1 15-JAN-20 6Q7E 0 JRNL AUTH A.TROESTER,D.KUDLINZKI,K.SAXENA,S.GANDE,H.SCHWALBE JRNL TITL EFFECTS OF NVP-BHG712 CHEMICAL MODIFICATIONS ON EPHA2 JRNL TITL 2 BINDING AND AFFINITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3318: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 116749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3686 - 2.6115 0.99 7880 143 0.1451 0.1637 REMARK 3 2 2.6115 - 2.0728 1.00 7854 144 0.1584 0.1780 REMARK 3 3 2.0728 - 1.8108 0.99 7792 142 0.1584 0.1816 REMARK 3 4 1.8108 - 1.6453 0.99 7800 142 0.1739 0.2045 REMARK 3 5 1.6453 - 1.5273 0.99 7815 143 0.1946 0.2222 REMARK 3 6 1.5273 - 1.4373 0.98 7669 140 0.2157 0.2524 REMARK 3 7 1.4373 - 1.3653 0.98 7714 140 0.2427 0.2580 REMARK 3 8 1.3653 - 1.3059 0.98 7612 139 0.2550 0.2592 REMARK 3 9 1.3059 - 1.2556 0.97 7663 140 0.2708 0.2937 REMARK 3 10 1.2556 - 1.2123 0.97 7642 140 0.2913 0.2924 REMARK 3 11 1.2123 - 1.1744 0.97 7526 137 0.3073 0.3371 REMARK 3 12 1.1744 - 1.1408 0.96 7574 138 0.3174 0.3635 REMARK 3 13 1.1408 - 1.1107 0.96 7550 138 0.3446 0.3732 REMARK 3 14 1.1107 - 1.0836 0.95 7470 137 0.3825 0.3912 REMARK 3 15 1.0836 - 1.0590 0.91 7098 127 0.4075 0.3915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2443 REMARK 3 ANGLE : 1.129 3324 REMARK 3 CHIRALITY : 0.082 352 REMARK 3 PLANARITY : 0.005 424 REMARK 3 DIHEDRAL : 16.016 1512 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 601 THROUGH 618 ) REMARK 3 ORIGIN FOR THE GROUP (A): -89.8514 -29.5807 81.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.1759 REMARK 3 T33: 0.2731 T12: -0.0244 REMARK 3 T13: -0.0009 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 0.0142 L22: 0.1090 REMARK 3 L33: 0.1052 L12: 0.0118 REMARK 3 L13: 0.0107 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.2335 S13: 0.2570 REMARK 3 S21: -0.1449 S22: 0.1902 S23: 0.0208 REMARK 3 S31: 0.0749 S32: -0.0149 S33: 0.0144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 619 THROUGH 653 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.0667 -28.5706 85.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.1474 REMARK 3 T33: 0.1855 T12: -0.0090 REMARK 3 T13: 0.0015 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.0435 L22: 0.1647 REMARK 3 L33: 0.0227 L12: 0.1090 REMARK 3 L13: -0.0520 L23: 0.0686 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: -0.0088 S13: -0.0924 REMARK 3 S21: -0.0630 S22: 0.0972 S23: -0.1179 REMARK 3 S31: 0.1269 S32: 0.1121 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 654 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -93.2780 -25.4281 94.4013 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.1199 REMARK 3 T33: 0.2493 T12: 0.0406 REMARK 3 T13: -0.0173 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.0367 L22: 0.0061 REMARK 3 L33: -0.0056 L12: 0.0199 REMARK 3 L13: 0.0351 L23: -0.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.0019 S13: 0.0316 REMARK 3 S21: 0.1027 S22: 0.0425 S23: 0.3032 REMARK 3 S31: -0.1435 S32: 0.1049 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 670 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.3207 -16.1604 82.6145 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1160 REMARK 3 T33: 0.1248 T12: -0.0109 REMARK 3 T13: -0.0058 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1058 L22: 0.0917 REMARK 3 L33: 0.1557 L12: -0.0315 REMARK 3 L13: -0.0660 L23: -0.0537 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.0292 S13: -0.0187 REMARK 3 S21: -0.0834 S22: 0.0118 S23: -0.0017 REMARK 3 S31: 0.0847 S32: 0.0366 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 755 ) REMARK 3 ORIGIN FOR THE GROUP (A): -86.3310 -6.4165 86.7176 REMARK 3 T TENSOR REMARK 3 T11: 0.1001 T22: 0.1130 REMARK 3 T33: 0.1044 T12: -0.0028 REMARK 3 T13: 0.0052 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1928 L22: 0.2061 REMARK 3 L33: 0.1023 L12: 0.0161 REMARK 3 L13: -0.0487 L23: 0.2052 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0149 S13: -0.0200 REMARK 3 S21: -0.0394 S22: 0.0046 S23: 0.0354 REMARK 3 S31: 0.0221 S32: -0.0157 S33: -0.0056 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 756 THROUGH 795 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.6223 -8.4870 103.5495 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1463 REMARK 3 T33: 0.1128 T12: -0.0043 REMARK 3 T13: -0.0001 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.0834 L22: 0.0538 REMARK 3 L33: 0.0134 L12: 0.0257 REMARK 3 L13: 0.0259 L23: -0.0422 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0727 S13: -0.0657 REMARK 3 S21: 0.0286 S22: -0.0225 S23: -0.0335 REMARK 3 S31: 0.0171 S32: -0.0204 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 796 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.6646 -1.0514 99.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1366 REMARK 3 T33: 0.1085 T12: 0.0024 REMARK 3 T13: -0.0005 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1378 L22: 0.3334 REMARK 3 L33: 0.1451 L12: 0.0519 REMARK 3 L13: -0.0371 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0638 S13: -0.0072 REMARK 3 S21: 0.0248 S22: 0.0124 S23: -0.0463 REMARK 3 S31: 0.0110 S32: 0.0696 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 881 ) REMARK 3 ORIGIN FOR THE GROUP (A): -84.3651 7.6262 93.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1167 REMARK 3 T33: 0.1191 T12: 0.0031 REMARK 3 T13: -0.0032 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1735 L22: 0.3297 REMARK 3 L33: 0.2142 L12: -0.0746 REMARK 3 L13: 0.0193 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.0471 S13: 0.0719 REMARK 3 S21: -0.0163 S22: 0.0030 S23: 0.0142 REMARK 3 S31: -0.0321 S32: -0.0079 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 882 THROUGH 896 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.6901 14.9585 90.8927 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.1522 REMARK 3 T33: 0.2791 T12: -0.0010 REMARK 3 T13: -0.0044 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.0435 L22: 0.0137 REMARK 3 L33: 0.0181 L12: 0.0375 REMARK 3 L13: -0.0501 L23: -0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.1016 S12: -0.0086 S13: 0.0215 REMARK 3 S21: -0.0687 S22: 0.0055 S23: -0.2491 REMARK 3 S31: 0.0203 S32: -0.0061 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.059 REMARK 200 RESOLUTION RANGE LOW (A) : 38.343 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.520 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.08 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% MPD_PEG1000_PEG3350, 100 MM REMARK 280 ALANINE, 100 MM MORPHEUS BUFFER SYSTEM 3 (TRIS/BICINE), PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.60550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 595 REMARK 465 ASP A 596 REMARK 465 PRO A 597 REMARK 465 ASN A 598 REMARK 465 GLN A 599 REMARK 465 ALA A 600 REMARK 465 SER A 635 REMARK 465 SER A 636 REMARK 465 GLY A 637 REMARK 465 LYS A 638 REMARK 465 LYS A 639 REMARK 465 SER A 761 REMARK 465 ARG A 762 REMARK 465 VAL A 763 REMARK 465 LEU A 764 REMARK 465 GLU A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 PRO A 768 REMARK 465 GLU A 769 REMARK 465 ALA A 770 REMARK 465 THR A 771 REMARK 465 TYR A 772 REMARK 465 THR A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLY A 776 REMARK 465 GLY A 777 REMARK 465 LYS A 778 REMARK 465 ILE A 779 REMARK 465 SER A 897 REMARK 465 THR A 898 REMARK 465 SER A 899 REMARK 465 GLY A 900 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 782 CG - CD - NE ANGL. DEV. = -29.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 603 -71.48 -59.42 REMARK 500 PHE A 604 10.44 -67.49 REMARK 500 PHE A 624 66.20 -157.23 REMARK 500 PHE A 624 66.20 -158.94 REMARK 500 ARG A 738 -19.01 81.64 REMARK 500 TRP A 819 -128.31 52.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1415 DISTANCE = 6.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HMW A 1001 DBREF 6Q7E A 596 900 UNP P29317 EPHA2_HUMAN 596 900 SEQADV 6Q7E GLY A 595 UNP P29317 EXPRESSION TAG SEQRES 1 A 306 GLY ASP PRO ASN GLN ALA VAL LEU LYS PHE THR THR GLU SEQRES 2 A 306 ILE HIS PRO SER CYS VAL THR ARG GLN LYS VAL ILE GLY SEQRES 3 A 306 ALA GLY GLU PHE GLY GLU VAL TYR LYS GLY MET LEU LYS SEQRES 4 A 306 THR SER SER GLY LYS LYS GLU VAL PRO VAL ALA ILE LYS SEQRES 5 A 306 THR LEU LYS ALA GLY TYR THR GLU LYS GLN ARG VAL ASP SEQRES 6 A 306 PHE LEU GLY GLU ALA GLY ILE MET GLY GLN PHE SER HIS SEQRES 7 A 306 HIS ASN ILE ILE ARG LEU GLU GLY VAL ILE SER LYS TYR SEQRES 8 A 306 LYS PRO MET MET ILE ILE THR GLU TYR MET GLU ASN GLY SEQRES 9 A 306 ALA LEU ASP LYS PHE LEU ARG GLU LYS ASP GLY GLU PHE SEQRES 10 A 306 SER VAL LEU GLN LEU VAL GLY MET LEU ARG GLY ILE ALA SEQRES 11 A 306 ALA GLY MET LYS TYR LEU ALA ASN MET ASN TYR VAL HIS SEQRES 12 A 306 ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN SEQRES 13 A 306 LEU VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL SEQRES 14 A 306 LEU GLU ASP ASP PRO GLU ALA THR TYR THR THR SER GLY SEQRES 15 A 306 GLY LYS ILE PRO ILE ARG TRP THR ALA PRO GLU ALA ILE SEQRES 16 A 306 SER TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER SEQRES 17 A 306 PHE GLY ILE VAL MET TRP GLU VAL MET THR TYR GLY GLU SEQRES 18 A 306 ARG PRO TYR TRP GLU LEU SER ASN HIS GLU VAL MET LYS SEQRES 19 A 306 ALA ILE ASN ASP GLY PHE ARG LEU PRO THR PRO MET ASP SEQRES 20 A 306 CYS PRO SER ALA ILE TYR GLN LEU MET MET GLN CYS TRP SEQRES 21 A 306 GLN GLN GLU ARG ALA ARG ARG PRO LYS PHE ALA ASP ILE SEQRES 22 A 306 VAL SER ILE LEU ASP LYS LEU ILE ARG ALA PRO ASP SER SEQRES 23 A 306 LEU LYS THR LEU ALA ASP PHE ASP PRO ARG VAL SER ILE SEQRES 24 A 306 ARG LEU PRO SER THR SER GLY HET HMW A1001 76 HETNAM HMW 3-[[4-IMIDAZOL-1-YL-6-[(3~{R})-3-OXIDANYLPYRROLIDIN-1- HETNAM 2 HMW YL]-1,3,5-TRIAZIN-2-YL]AMINO]-4-METHYL-~{N}-[3- HETNAM 3 HMW (TRIFLUOROMETHYL)PHENYL]BENZAMIDE FORMUL 2 HMW C25 H23 F3 N8 O2 FORMUL 3 HOH *315(H2 O) HELIX 1 AA1 HIS A 609 SER A 611 5 3 HELIX 2 AA2 THR A 653 PHE A 670 1 18 HELIX 3 AA3 ALA A 699 LYS A 707 1 9 HELIX 4 AA4 SER A 712 MET A 733 1 22 HELIX 5 AA5 ALA A 741 ARG A 743 5 3 HELIX 6 AA6 PRO A 780 THR A 784 5 5 HELIX 7 AA7 ALA A 785 ARG A 792 1 8 HELIX 8 AA8 THR A 795 THR A 812 1 18 HELIX 9 AA9 SER A 822 ASP A 832 1 11 HELIX 10 AB1 PRO A 843 TRP A 854 1 12 HELIX 11 AB2 GLU A 857 ARG A 861 5 5 HELIX 12 AB3 LYS A 863 ALA A 877 1 15 HELIX 13 AB4 PRO A 878 LYS A 882 5 5 SHEET 1 AA1 5 VAL A 613 ALA A 621 0 SHEET 2 AA1 5 GLU A 626 LEU A 632 -1 O VAL A 627 N ILE A 619 SHEET 3 AA1 5 VAL A 641 LEU A 648 -1 O ILE A 645 N TYR A 628 SHEET 4 AA1 5 MET A 688 GLU A 693 -1 O ILE A 690 N LYS A 646 SHEET 5 AA1 5 LEU A 678 ILE A 682 -1 N GLY A 680 O ILE A 691 SHEET 1 AA2 2 ILE A 745 VAL A 747 0 SHEET 2 AA2 2 CYS A 753 VAL A 755 -1 O LYS A 754 N LEU A 746 CISPEP 1 LYS A 686 PRO A 687 0 -0.84 SITE 1 AC1 20 ILE A 619 ALA A 621 ALA A 644 GLU A 663 SITE 2 AC1 20 MET A 667 PHE A 670 ILE A 675 ILE A 676 SITE 3 AC1 20 THR A 692 TYR A 694 MET A 695 TYR A 735 SITE 4 AC1 20 HIS A 737 LEU A 746 VAL A 755 SER A 756 SITE 5 AC1 20 ASP A 757 PHE A 758 HOH A1204 HOH A1247 CRYST1 32.868 107.211 40.516 90.00 108.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030425 0.000000 0.010387 0.00000 SCALE2 0.000000 0.009327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026080 0.00000