HEADER PROTEIN TRANSPORT 14-DEC-18 6Q83 TITLE CRYSTAL STRUCTURE OF THE BIPORTIN PDR6 IN COMPLEX WITH UBC9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN BETA-LIKE PROTEIN KAP122; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KARYOPHERIN-122,PLEIOTROPIC DRUG RESISTANCE REGULATORY COMPND 5 PROTEIN 6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UBC9; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: KAP122, PDR6, YGL016W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: TOP10 F'; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE-80; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 14 S288C); SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: NEB EXPRESS; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PQE-80 KEYWDS IMPORTIN-BETA FAMILY, BIPORTIN, NUCLEAR IMPORT, SUMOYLATION, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.AKSU,S.TRAKHANOV,A.VERA-RODRIGUEZ,D.GORLICH REVDAT 4 24-JAN-24 6Q83 1 REMARK REVDAT 3 12-JUN-19 6Q83 1 JRNL REVDAT 2 08-MAY-19 6Q83 1 JRNL REVDAT 1 01-MAY-19 6Q83 0 JRNL AUTH M.AKSU,S.TRAKHANOV,A.VERA RODRIGUEZ,D.GORLICH JRNL TITL STRUCTURAL BASIS FOR THE NUCLEAR IMPORT AND EXPORT FUNCTIONS JRNL TITL 2 OF THE BIPORTIN PDR6/KAP122. JRNL REF J.CELL BIOL. V. 218 1839 2019 JRNL REFN ESSN 1540-8140 JRNL PMID 31023722 JRNL DOI 10.1083/JCB.201812093 REMARK 2 REMARK 2 RESOLUTION. 4.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.030 REMARK 3 FREE R VALUE TEST SET COUNT : 744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5679 - 7.7384 1.00 4791 153 0.1898 0.2063 REMARK 3 2 7.7384 - 6.1459 1.00 4792 147 0.3391 0.3449 REMARK 3 3 6.1459 - 5.3701 1.00 4751 147 0.3907 0.4450 REMARK 3 4 5.3701 - 4.8796 1.00 4787 152 0.3783 0.3352 REMARK 3 5 4.8796 - 4.5301 0.98 4668 145 0.3886 0.3846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.830 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 226.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 311.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12937 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.530 REMARK 200 RESOLUTION RANGE LOW (A) : 49.565 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.07 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.23 REMARK 200 R MERGE FOR SHELL (I) : 2.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GJD AND 6Q82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, MAGNESIUM CHLORIDE, REMARK 280 ETHANOL, PH 5.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 99.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.23273 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 96.54333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 99.13000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.23273 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 96.54333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 99.13000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.23273 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.54333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 99.13000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 57.23273 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.54333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 99.13000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 57.23273 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 96.54333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 99.13000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 57.23273 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.54333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 114.46546 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 193.08667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 114.46546 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 193.08667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 114.46546 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 193.08667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 114.46546 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 193.08667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 114.46546 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 193.08667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 114.46546 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 193.08667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 THR A 70 REMARK 465 ARG A 71 REMARK 465 GLY A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 ASP A 75 REMARK 465 TYR A 76 REMARK 465 GLU A 77 REMARK 465 LEU A 130 REMARK 465 ASN A 131 REMARK 465 ASN A 132 REMARK 465 ALA A 133 REMARK 465 GLY A 134 REMARK 465 ASN A 135 REMARK 465 GLU A 136 REMARK 465 GLN A 156 REMARK 465 ASN A 157 REMARK 465 GLN A 158 REMARK 465 ASN A 159 REMARK 465 ILE A 160 REMARK 465 ASN A 161 REMARK 465 SER A 263 REMARK 465 VAL A 264 REMARK 465 SER A 265 REMARK 465 SER A 266 REMARK 465 SER A 267 REMARK 465 GLY A 268 REMARK 465 VAL A 329 REMARK 465 VAL A 330 REMARK 465 ARG A 331 REMARK 465 PRO A 332 REMARK 465 ASP A 333 REMARK 465 SER A 334 REMARK 465 GLY A 335 REMARK 465 ILE A 336 REMARK 465 THR A 337 REMARK 465 ASP A 338 REMARK 465 ILE A 339 REMARK 465 SER A 340 REMARK 465 ASN A 341 REMARK 465 LYS A 342 REMARK 465 GLN A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 ASP A 392 REMARK 465 ASN A 393 REMARK 465 GLY A 394 REMARK 465 GLN A 395 REMARK 465 ILE A 776 REMARK 465 ILE A 777 REMARK 465 GLU A 778 REMARK 465 ASN A 779 REMARK 465 ASP A 780 REMARK 465 ALA A 781 REMARK 465 LEU A 782 REMARK 465 LEU A 783 REMARK 465 GLN A 784 REMARK 465 ARG A 785 REMARK 465 CYS A 1040 REMARK 465 ASN A 1041 REMARK 465 ASN A 1042 REMARK 465 PRO A 1043 REMARK 465 PRO A 1077 REMARK 465 ASN A 1078 REMARK 465 TYR A 1079 REMARK 465 GLN A 1080 REMARK 465 GLY A 1081 REMARK 465 GLY B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 GLN A 748 CD OE1 NE2 REMARK 470 TYR A1013 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A1035 CG1 CG2 REMARK 470 LEU A1036 CG CD1 CD2 REMARK 470 GLN A1038 CG CD OE1 NE2 REMARK 470 ILE A1039 CG1 CG2 CD1 REMARK 470 ARG A1060 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 64 OH TYR A 89 2.09 REMARK 500 O LEU A 637 OG1 THR A 641 2.14 REMARK 500 O THR A 867 NH2 ARG B 135 2.14 REMARK 500 OG1 THR A 148 O ASN A 171 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 20 -153.48 -84.60 REMARK 500 HIS A 21 -78.23 4.94 REMARK 500 SER A 36 153.88 -42.92 REMARK 500 GLU A 37 -18.42 -38.85 REMARK 500 ASN A 102 -74.23 -73.48 REMARK 500 MET A 103 97.86 -166.35 REMARK 500 TYR A 104 -59.17 -125.73 REMARK 500 ASN A 143 -35.11 72.60 REMARK 500 ASN A 144 90.26 -161.58 REMARK 500 MET A 153 57.45 -95.80 REMARK 500 TYR A 176 -167.33 -101.45 REMARK 500 SER A 184 23.79 -77.66 REMARK 500 MET A 214 -82.06 -79.84 REMARK 500 SER A 215 -22.76 63.70 REMARK 500 HIS A 224 -54.86 -123.23 REMARK 500 THR A 261 -64.20 -109.15 REMARK 500 THR A 377 -49.62 -146.95 REMARK 500 LEU A 384 -60.83 -96.12 REMARK 500 PHE A 414 94.36 54.51 REMARK 500 LEU A 416 107.05 80.53 REMARK 500 THR A 417 150.79 -45.63 REMARK 500 PRO A 418 -166.04 -71.63 REMARK 500 VAL A 419 -58.51 23.03 REMARK 500 GLN A 421 -57.59 -120.03 REMARK 500 LEU A 514 -54.09 -122.66 REMARK 500 LYS A 536 -6.75 63.48 REMARK 500 SER A 593 -60.14 -92.64 REMARK 500 ASN A 647 87.15 -150.39 REMARK 500 CYS A 672 42.27 -96.74 REMARK 500 PRO A 693 34.34 -63.95 REMARK 500 GLN A 716 40.88 -94.91 REMARK 500 ASN A 719 5.95 -67.93 REMARK 500 LEU A 749 -169.49 -105.85 REMARK 500 ASP A 796 73.16 37.02 REMARK 500 PHE A 883 31.97 -95.32 REMARK 500 VAL A 928 -64.29 -90.43 REMARK 500 SER A 988 30.66 -70.17 REMARK 500 SER A 989 -37.76 -141.01 REMARK 500 SER A1008 -5.45 82.78 REMARK 500 ARG A1060 -12.91 76.78 REMARK 500 ALA A1061 27.32 -142.43 REMARK 500 HIS B 83 141.23 -173.86 REMARK 500 GLN B 101 -105.06 -127.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Q83 A 2 1081 UNP P32767 KA122_YEAST 2 1081 DBREF 6Q83 B 2 157 UNP P50623 UBC9_YEAST 2 157 SEQADV 6Q83 GLY B 1 UNP P50623 EXPRESSION TAG SEQRES 1 A 1080 SER SER ILE HIS GLU VAL VAL ALA LEU ILE GLU GLU LEU SEQRES 2 A 1080 TYR SER PRO HIS PRO LYS HIS ASP VAL ASN GLN ILE GLN SEQRES 3 A 1080 GLN SER LEU GLN SER ILE GLN LYS SER GLU GLN GLY PHE SEQRES 4 A 1080 HIS LEU ALA ASN GLU LEU LEU SER ASP ASP LYS TYR SER SEQRES 5 A 1080 ALA ASN VAL LYS TYR PHE GLY ALA LEU THR LEU THR VAL SEQRES 6 A 1080 GLN LEU ASN THR ARG GLY GLU ASN ASP TYR GLU THR LEU SEQRES 7 A 1080 TRP ASN VAL PHE ARG SER ASN LEU LEU TYR LEU THR LYS SEQRES 8 A 1080 PHE SER THR LEU TYR VAL SER ASN PRO ASN MET TYR GLY SEQRES 9 A 1080 GLN SER LEU ILE ILE ILE LYS LYS LEU MET SER ASN LEU SEQRES 10 A 1080 SER LEU ILE PHE THR LYS ILE ASN ASP PRO GLN LEU ASN SEQRES 11 A 1080 ASN ALA GLY ASN GLU ASN MET ILE LYS GLN TRP ASN ASN SEQRES 12 A 1080 PRO ILE ASN THR PHE ILE GLN LEU MET SER VAL GLN ASN SEQRES 13 A 1080 GLN ASN ILE ASN ALA ASP GLN LEU LEU LEU ASP SER ILE SEQRES 14 A 1080 ASN CYS SER LEU THR TYR GLU GLN LEU SER GLN PHE VAL SEQRES 15 A 1080 SER LEU SER GLN LYS HIS ASN GLU LEU ALA LEU THR PHE SEQRES 16 A 1080 THR GLU VAL ILE VAL GLU ASP LEU THR LYS PHE GLN THR SEQRES 17 A 1080 LYS ARG HIS SER MET SER GLN ILE HIS GLU VAL VAL HIS SEQRES 18 A 1080 GLU HIS LEU TYR ILE SER THR MET ALA LEU ILE ASN LEU SEQRES 19 A 1080 ASN LEU THR ALA GLN ALA VAL PHE ASN PRO THR VAL PHE SEQRES 20 A 1080 ASP CYS ILE THR ALA TRP ILE ASN TYR ILE SER LEU THR SEQRES 21 A 1080 ARG SER VAL SER SER SER GLY ARG MET ASP LEU SER GLU SEQRES 22 A 1080 ILE PHE GLN ASN LEU ILE ASP LEU MET TYR GLN SER THR SEQRES 23 A 1080 GLU GLY SER ASP GLY TYR GLU ASN ALA GLU LYS ILE LEU SEQRES 24 A 1080 THR ILE PHE GLY ASN VAL PHE ALA ASN ASP PRO LEU LEU SEQRES 25 A 1080 MET SER TYR ASP LEU ARG GLN GLN ILE GLU CYS ILE PHE SEQRES 26 A 1080 LEU GLY VAL VAL ARG PRO ASP SER GLY ILE THR ASP ILE SEQRES 27 A 1080 SER ASN LYS ASN SER TRP MET LEU GLN TYR MET ASN TYR SEQRES 28 A 1080 LEU VAL THR ASN ASP PHE PHE SER GLU LEU LYS GLU LEU SEQRES 29 A 1080 ALA ILE CYS ILE VAL ASP PHE LEU GLN ILE ASN THR LEU SEQRES 30 A 1080 SER VAL CYS ASN LYS LEU PHE THR ASN ILE GLN ALA ALA SEQRES 31 A 1080 ASP ASN GLY GLN VAL GLN ASP GLU TYR ILE GLN GLU TYR SEQRES 32 A 1080 ILE LYS VAL LEU LEU GLN MET THR ASN PHE PRO LEU THR SEQRES 33 A 1080 PRO VAL LEU GLN GLU PHE PHE SER VAL ARG MET VAL ASP SEQRES 34 A 1080 PHE TRP LEU ASP LEU SER ASP ALA TYR THR ASN LEU ALA SEQRES 35 A 1080 SER GLU THR LEU ARG PRO ASN SER ILE GLU LEU SER THR SEQRES 36 A 1080 GLN ILE PHE GLN GLN LEU ILE ASN ILE TYR LEU PRO LYS SEQRES 37 A 1080 ILE SER LEU SER VAL LYS GLN ARG ILE ILE GLU GLU GLU SEQRES 38 A 1080 GLY GLU SER THR SER VAL ASN GLU PHE GLU ASP PHE ARG SEQRES 39 A 1080 ASN ALA VAL SER ASP LEU ALA GLN SER LEU TRP SER ILE SEQRES 40 A 1080 LEU GLY ASN ASP ASN LEU THR ASN VAL LEU ILE ASP GLY SEQRES 41 A 1080 MET GLY GLN MET PRO ALA ALA SER ASP GLU THR LEU ILE SEQRES 42 A 1080 ILE LYS ASP THR ASP VAL LEU PHE ARG ILE GLU THR MET SEQRES 43 A 1080 CYS PHE VAL LEU ASN THR ILE LEU VAL ASP MET THR LEU SEQRES 44 A 1080 SER GLU SER PRO TRP ILE LYS ASN ILE VAL ASP ALA ASN SEQRES 45 A 1080 LYS PHE PHE ASN GLN ASN VAL ILE SER VAL PHE GLN THR SEQRES 46 A 1080 GLY PHE GLN THR SER ALA SER THR LYS VAL SER GLN ILE SEQRES 47 A 1080 LEU LYS LEU ASP PHE VAL ARG THR SER THR THR LEU ILE SEQRES 48 A 1080 GLY THR LEU ALA GLY TYR PHE LYS GLN GLU PRO PHE GLN SEQRES 49 A 1080 LEU ASN PRO TYR VAL GLU ALA LEU PHE GLN GLY LEU HIS SEQRES 50 A 1080 THR CYS THR ASN PHE THR SER LYS ASN GLU GLN GLU LYS SEQRES 51 A 1080 ILE SER ASN ASP LYS LEU GLU VAL MET VAL ILE LYS THR SEQRES 52 A 1080 VAL SER THR LEU CYS GLU THR CYS ARG GLU GLU LEU THR SEQRES 53 A 1080 PRO TYR LEU MET HIS PHE ILE SER PHE LEU ASN THR VAL SEQRES 54 A 1080 ILE MET PRO ASP SER ASN VAL SER HIS PHE THR ARG THR SEQRES 55 A 1080 LYS LEU VAL ARG SER ILE GLY TYR VAL VAL GLN CYS GLN SEQRES 56 A 1080 VAL SER ASN GLY PRO GLU GLU GLN ALA LYS TYR ILE LEU SEQRES 57 A 1080 GLN LEU THR ASN LEU LEU SER GLY SER ILE GLU HIS CYS SEQRES 58 A 1080 LEU ALA SER SER VAL GLN LEU GLN GLU GLN GLN ASP TYR SEQRES 59 A 1080 ILE ASN CYS LEU LEU TYR CYS ILE SER GLU LEU ALA THR SEQRES 60 A 1080 SER LEU ILE GLN PRO THR GLU ILE ILE GLU ASN ASP ALA SEQRES 61 A 1080 LEU LEU GLN ARG LEU SER GLU PHE GLN SER PHE TRP SER SEQRES 62 A 1080 SER ASP PRO LEU GLN ILE ARG SER LYS ILE MET CYS THR SEQRES 63 A 1080 ILE ASP LYS VAL LEU ASP ASN SER ILE TYR CYS LYS ASN SEQRES 64 A 1080 SER ALA PHE VAL GLU ILE GLY CYS LEU ILE VAL GLY LYS SEQRES 65 A 1080 GLY LEU ASN LEU PRO ASP GLY GLU PRO TYR PHE LEU LYS SEQRES 66 A 1080 TYR ASN MET SER GLU VAL MET ASN PHE VAL LEU ARG HIS SEQRES 67 A 1080 VAL PRO ASN CYS GLU LEU ALA THR CYS LEU PRO TYR PHE SEQRES 68 A 1080 VAL TYR LEU LEU GLU LYS LEU ILE SER GLU PHE ARG LYS SEQRES 69 A 1080 GLU LEU THR PRO GLN GLU PHE ASP PHE MET PHE GLU LYS SEQRES 70 A 1080 ILE LEU LEU VAL TYR TYR ASP ALA TYR ILE ILE ASN ASP SEQRES 71 A 1080 PRO ASP LEU LEU GLN MET THR ILE GLY PHE VAL ASN ASN SEQRES 72 A 1080 VAL LEU ASP VAL LYS PRO GLY LEU ALA ILE GLY SER LYS SEQRES 73 A 1080 HIS TRP THR SER PHE ILE LEU PRO GLN PHE LEU LYS LEU SEQRES 74 A 1080 ILE PRO SER ARG GLU LYS PHE THR ILE VAL ALA VAL ALA SEQRES 75 A 1080 LYS PHE TRP THR LYS LEU ILE ASN ASN LYS LYS TYR ASN SEQRES 76 A 1080 GLN GLU GLU LEU THR THR VAL ARG GLN GLN VAL SER SER SEQRES 77 A 1080 ILE GLY GLY ASP LEU VAL TYR GLN ILE MET TYR GLY LEU SEQRES 78 A 1080 PHE HIS THR GLN ARG SER ASP LEU ASN SER TYR THR ASP SEQRES 79 A 1080 LEU LEU ARG ALA LEU VAL ALA LYS PHE PRO ILE GLU ALA SEQRES 80 A 1080 ARG GLU TRP LEU VAL ALA VAL LEU PRO GLN ILE CYS ASN SEQRES 81 A 1080 ASN PRO ALA GLY HIS GLU LYS PHE ILE ASN LYS LEU LEU SEQRES 82 A 1080 ILE THR ARG GLY SER ARG ALA ALA GLY ASN VAL ILE LEU SEQRES 83 A 1080 GLN TRP TRP LEU ASP CYS THR THR LEU PRO ASN TYR GLN SEQRES 84 A 1080 GLY SEQRES 1 B 157 GLY SER SER LEU CYS LEU GLN ARG LEU GLN GLU GLU ARG SEQRES 2 B 157 LYS LYS TRP ARG LYS ASP HIS PRO PHE GLY PHE TYR ALA SEQRES 3 B 157 LYS PRO VAL LYS LYS ALA ASP GLY SER MET ASP LEU GLN SEQRES 4 B 157 LYS TRP GLU ALA GLY ILE PRO GLY LYS GLU GLY THR ASN SEQRES 5 B 157 TRP ALA GLY GLY VAL TYR PRO ILE THR VAL GLU TYR PRO SEQRES 6 B 157 ASN GLU TYR PRO SER LYS PRO PRO LYS VAL LYS PHE PRO SEQRES 7 B 157 ALA GLY PHE TYR HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 B 157 ILE CYS LEU SER ILE LEU ASN GLU ASP GLN ASP TRP ARG SEQRES 9 B 157 PRO ALA ILE THR LEU LYS GLN ILE VAL LEU GLY VAL GLN SEQRES 10 B 157 ASP LEU LEU ASP SER PRO ASN PRO ASN SER PRO ALA GLN SEQRES 11 B 157 GLU PRO ALA TRP ARG SER PHE SER ARG ASN LYS ALA GLU SEQRES 12 B 157 TYR ASP LYS LYS VAL LEU LEU GLN ALA LYS GLN TYR SER SEQRES 13 B 157 LYS HELIX 1 AA1 SER A 3 TYR A 15 1 13 HELIX 2 AA2 ASP A 22 GLN A 34 1 13 HELIX 3 AA3 GLN A 38 ASP A 49 1 12 HELIX 4 AA4 SER A 53 VAL A 66 1 14 HELIX 5 AA5 LEU A 79 ASN A 100 1 22 HELIX 6 AA6 SER A 107 ASN A 126 1 20 HELIX 7 AA7 ASN A 144 LEU A 152 1 9 HELIX 8 AA8 LEU A 165 SER A 173 1 9 HELIX 9 AA9 TYR A 176 SER A 184 1 9 HELIX 10 AB1 SER A 186 ARG A 211 1 26 HELIX 11 AB2 GLN A 216 HIS A 224 1 9 HELIX 12 AB3 HIS A 224 ALA A 239 1 16 HELIX 13 AB4 PRO A 245 ARG A 262 1 18 HELIX 14 AB5 LEU A 272 SER A 286 1 15 HELIX 15 AB6 TYR A 293 ASP A 310 1 18 HELIX 16 AB7 PRO A 311 MET A 314 5 4 HELIX 17 AB8 SER A 315 LEU A 327 1 13 HELIX 18 AB9 SER A 344 ASN A 356 1 13 HELIX 19 AC1 PHE A 358 GLN A 374 1 17 HELIX 20 AC2 THR A 377 THR A 386 1 10 HELIX 21 AC3 GLN A 397 PHE A 414 1 18 HELIX 22 AC4 PHE A 423 ASN A 441 1 19 HELIX 23 AC5 ALA A 443 LEU A 447 5 5 HELIX 24 AC6 ASN A 450 LEU A 467 1 18 HELIX 25 AC7 SER A 471 GLU A 482 1 12 HELIX 26 AC8 SER A 485 GLN A 524 1 40 HELIX 27 AC9 ASP A 537 ASP A 557 1 21 HELIX 28 AD1 PRO A 564 ALA A 572 1 9 HELIX 29 AD2 PHE A 575 GLN A 589 1 15 HELIX 30 AD3 THR A 594 LEU A 615 1 22 HELIX 31 AD4 LEU A 615 GLU A 622 1 8 HELIX 32 AD5 PRO A 623 GLN A 625 5 3 HELIX 33 AD6 LEU A 626 CYS A 640 1 15 HELIX 34 AD7 GLN A 649 CYS A 672 1 24 HELIX 35 AD8 TYR A 679 ILE A 691 1 13 HELIX 36 AD9 SER A 698 CYS A 715 1 18 HELIX 37 AE1 GLY A 720 SER A 746 1 27 HELIX 38 AE2 LEU A 749 LEU A 770 1 22 HELIX 39 AE3 SER A 787 ASP A 796 1 10 HELIX 40 AE4 GLN A 799 ASP A 813 1 15 HELIX 41 AE5 ASN A 814 LYS A 819 1 6 HELIX 42 AE6 ASN A 820 GLY A 832 1 13 HELIX 43 AE7 ASN A 848 VAL A 860 1 13 HELIX 44 AE8 GLU A 864 PHE A 883 1 20 HELIX 45 AE9 THR A 888 LEU A 900 1 13 HELIX 46 AF1 TYR A 903 ILE A 908 1 6 HELIX 47 AF2 ASP A 911 LYS A 929 1 19 HELIX 48 AF3 LYS A 929 GLY A 935 1 7 HELIX 49 AF4 PHE A 942 LEU A 950 1 9 HELIX 50 AF5 GLU A 955 ASN A 972 1 18 HELIX 51 AF6 ASN A 976 THR A 1005 1 30 HELIX 52 AF7 ASN A 1011 PHE A 1024 1 14 HELIX 53 AF8 PHE A 1024 ILE A 1039 1 16 HELIX 54 AF9 ALA A 1044 HIS A 1046 5 3 HELIX 55 AG1 GLU A 1047 THR A 1056 1 10 HELIX 56 AG2 GLY A 1063 LEU A 1076 1 14 HELIX 57 AG3 SER B 3 ASP B 19 1 17 HELIX 58 AG4 LEU B 94 ASN B 98 5 5 HELIX 59 AG5 THR B 108 SER B 122 1 15 HELIX 60 AG6 GLN B 130 ASN B 140 1 11 HELIX 61 AG7 ASN B 140 TYR B 155 1 16 SHEET 1 AA1 4 TYR B 25 LYS B 30 0 SHEET 2 AA1 4 MET B 36 PRO B 46 -1 O ASP B 37 N VAL B 29 SHEET 3 AA1 4 VAL B 57 GLU B 63 -1 O TYR B 58 N ILE B 45 SHEET 4 AA1 4 LYS B 74 LYS B 76 -1 O LYS B 74 N GLU B 63 CISPEP 1 GLN A 34 LYS A 35 0 7.79 CISPEP 2 ASN A 647 GLU A 648 0 -11.28 CISPEP 3 TYR B 68 PRO B 69 0 1.94 CRYST1 198.260 198.260 289.630 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005044 0.002912 0.000000 0.00000 SCALE2 0.000000 0.005824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003453 0.00000