HEADER LIGASE 14-DEC-18 6Q89 TITLE NEISSERIA GONORRHOEAE LEUCYL-TRNA SYNTHETASE IN COMPLEX WITH THE TITLE 2 INTERMEDIATE ANALOG 5'-O-(N-(L-LEUCYL)-SULFAMOYL)ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 ATCC: 49226; SOURCE 5 GENE: LEUS, WHOK_00006, WHOM_00006, WHOO_00006, WHOP_00006, SOURCE 6 WHOU_00006, WHOW_00006, WHOX_00006, WHOY_00006, WHOZ_00006; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-INHIBITOR COMPLEX, ROSSMANN FOLD, TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.DE GRAEF,S.V.STRELKOV,S.D.WEEKS REVDAT 4 24-JAN-24 6Q89 1 LINK REVDAT 3 01-MAY-19 6Q89 1 REMARK REVDAT 2 24-APR-19 6Q89 1 JRNL REVDAT 1 17-APR-19 6Q89 0 JRNL AUTH M.NAUTIYAL,S.DE GRAEF,L.PANG,B.GADAKH,S.V.STRELKOV, JRNL AUTH 2 S.D.WEEKS,A.VAN AERSCHOT JRNL TITL COMPARATIVE ANALYSIS OF PYRIMIDINE SUBSTITUTED JRNL TITL 2 AMINOACYL-SULFAMOYL NUCLEOSIDES AS POTENTIAL INHIBITORS JRNL TITL 3 TARGETING CLASS I AMINOACYL-TRNA SYNTHETASES. JRNL REF EUR.J.MED.CHEM. V. 173 154 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 30995568 JRNL DOI 10.1016/J.EJMECH.2019.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.260 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 78.0081 - 5.3260 0.99 3490 160 0.1578 0.1741 REMARK 3 2 5.3260 - 4.2274 1.00 3312 171 0.1432 0.1802 REMARK 3 3 4.2274 - 3.6931 1.00 3295 150 0.1483 0.1815 REMARK 3 4 3.6931 - 3.3554 1.00 3295 131 0.1905 0.2480 REMARK 3 5 3.3554 - 3.1149 1.00 3247 133 0.2003 0.2635 REMARK 3 6 3.1149 - 2.9313 0.98 3216 143 0.2071 0.2694 REMARK 3 7 2.9313 - 2.7844 1.00 3221 146 0.2115 0.2785 REMARK 3 8 2.7844 - 2.6632 1.00 3238 135 0.2000 0.2744 REMARK 3 9 2.6632 - 2.5607 1.00 3213 136 0.1975 0.3015 REMARK 3 10 2.5607 - 2.4723 1.00 3198 163 0.2005 0.2754 REMARK 3 11 2.4723 - 2.3950 1.00 3232 158 0.2034 0.2526 REMARK 3 12 2.3950 - 2.3266 1.00 3195 123 0.2100 0.2952 REMARK 3 13 2.3266 - 2.2653 1.00 3247 137 0.2250 0.3010 REMARK 3 14 2.2653 - 2.2100 1.00 3179 143 0.2430 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7780 0.3411 -30.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.3597 REMARK 3 T33: 0.3945 T12: 0.0043 REMARK 3 T13: -0.1000 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.7912 L22: 1.0269 REMARK 3 L33: 1.0632 L12: 0.5960 REMARK 3 L13: 0.5911 L23: 0.2549 REMARK 3 S TENSOR REMARK 3 S11: 0.1824 S12: -0.0269 S13: -0.1949 REMARK 3 S21: 0.0934 S22: -0.0682 S23: 0.0452 REMARK 3 S31: 0.1838 S32: 0.0483 S33: -0.1116 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7639 33.8241 -14.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.5506 REMARK 3 T33: 0.3561 T12: 0.1212 REMARK 3 T13: -0.0856 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 5.2942 L22: 3.0668 REMARK 3 L33: 4.5540 L12: 0.6850 REMARK 3 L13: 1.3502 L23: -1.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.1045 S12: -0.4588 S13: -0.2294 REMARK 3 S21: 0.1292 S22: -0.0999 S23: -0.0714 REMARK 3 S31: -0.5760 S32: -1.0482 S33: 0.1761 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 397 THROUGH 644 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3995 5.3280 -28.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2999 REMARK 3 T33: 0.3235 T12: -0.0122 REMARK 3 T13: -0.0820 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.0040 L22: 0.7823 REMARK 3 L33: 0.9199 L12: -0.4143 REMARK 3 L13: 0.3746 L23: 0.1083 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: -0.0516 S13: -0.0517 REMARK 3 S21: 0.0198 S22: 0.0501 S23: -0.0584 REMARK 3 S31: 0.0036 S32: 0.0822 S33: -0.1053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 645 THROUGH 875 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3814 -16.6791 -54.4494 REMARK 3 T TENSOR REMARK 3 T11: 0.4869 T22: 0.3795 REMARK 3 T33: 0.5637 T12: -0.0275 REMARK 3 T13: -0.1664 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.4858 L22: 0.4627 REMARK 3 L33: 1.9288 L12: -0.0860 REMARK 3 L13: 0.9009 L23: -0.0102 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 0.0314 S13: -0.0176 REMARK 3 S21: 0.0745 S22: -0.0007 S23: 0.0460 REMARK 3 S31: 0.0003 S32: -0.1826 S33: -0.1571 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 82.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 1.13400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: A MODEL GENERATED FROM 3ZJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS MIXED WITH 0.1 M REMARK 280 BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% W/V PEG 3350 AND A REMARK 280 CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) RATIO. THE SEED REMARK 280 STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION BUFFER. SUITABLE REMARK 280 CRYSTALS WERE SOAKED WITH 1 MM 5'-O-(N-(L-LEUCYL)-SULFAMOYL) REMARK 280 ADENOSINE IN AN EQUILVALENT PRECIPITANT SOLUTION SUPPLEMENTED REMARK 280 WITH 22% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.47100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.25950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.46750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.25950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.47100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.46750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ARG A 590 REMARK 465 GLU A 591 REMARK 465 ASN A 592 REMARK 465 ASP A 593 REMARK 465 LYS A 594 REMARK 465 GLY A 595 REMARK 465 GLY A 596 REMARK 465 LYS A 597 REMARK 465 THR A 608 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 ALA A 618 REMARK 465 VAL A 619 REMARK 465 LEU A 620 REMARK 465 LYS A 621 REMARK 465 ALA A 622 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 OE1 NE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 GLN A 170 CD OE1 NE2 REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 177 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 177 CZ3 CH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CD CE NZ REMARK 470 GLU A 214 CD OE1 OE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LEU A 287 CD1 CD2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 VAL A 299 CG1 CG2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ASP A 303 OD1 OD2 REMARK 470 THR A 306 OG1 CG2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 TYR A 339 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 365 CE NZ REMARK 470 LYS A 366 CD CE NZ REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ASP A 373 OD1 OD2 REMARK 470 ASP A 377 CG OD1 OD2 REMARK 470 ARG A 380 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 383 CG CD OE1 OE2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 LYS A 498 CD CE NZ REMARK 470 LYS A 521 CD CE NZ REMARK 470 GLU A 530 CD OE1 OE2 REMARK 470 LYS A 533 CD CE NZ REMARK 470 ASP A 598 CG OD1 OD2 REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 ASP A 623 CG OD1 OD2 REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 VAL A 627 CG1 CG2 REMARK 470 VAL A 628 CG1 CG2 REMARK 470 ILE A 629 CG1 CG2 CD1 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 639 CG CD CE NZ REMARK 470 LYS A 703 CE NZ REMARK 470 LYS A 714 CD CE NZ REMARK 470 LYS A 756 CD CE NZ REMARK 470 GLU A 762 CD OE1 OE2 REMARK 470 VAL A 813 CG1 CG2 REMARK 470 GLU A 818 CG CD OE1 OE2 REMARK 470 VAL A 823 CG1 CG2 REMARK 470 LYS A 826 CG CD CE NZ REMARK 470 LYS A 830 CG CD CE NZ REMARK 470 ASP A 836 CG OD1 OD2 REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 GLU A 850 CG CD OE1 OE2 REMARK 470 VAL A 853 CG1 CG2 REMARK 470 LYS A 854 CG CD CE NZ REMARK 470 LYS A 859 CG CD CE NZ REMARK 470 LYS A 862 CG CD CE NZ REMARK 470 LYS A 863 CG CD CE NZ REMARK 470 ILE A 874 CG1 CG2 CD1 REMARK 470 VAL A 875 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 -73.80 -75.26 REMARK 500 SER A 179 -21.77 -140.12 REMARK 500 ALA A 378 1.45 -61.56 REMARK 500 ASP A 473 22.67 -142.77 REMARK 500 MET A 475 42.28 -82.72 REMARK 500 ASP A 505 123.52 -34.92 REMARK 500 SER A 519 70.85 -152.83 REMARK 500 ILE A 549 -79.65 -105.17 REMARK 500 SER A 630 -155.95 -102.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 113.5 REMARK 620 3 CYS A 490 SG 104.7 106.8 REMARK 620 4 CYS A 493 SG 104.2 115.8 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1172 O REMARK 620 2 HOH A1207 O 130.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LSS A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6I5Y RELATED DB: PDB REMARK 900 RELATED ID: 6HB7 RELATED DB: PDB REMARK 900 RELATED ID: 6HB5 RELATED DB: PDB REMARK 900 RELATED ID: 6HB6 RELATED DB: PDB DBREF1 6Q89 A 1 876 UNP A0A1D3HNX6_NEIGO DBREF2 6Q89 A A0A1D3HNX6 3 878 SEQADV 6Q89 GLY A 0 UNP A0A1D3HNX EXPRESSION TAG SEQADV 6Q89 ASN A 454 UNP A0A1D3HNX ASP 456 ENGINEERED MUTATION SEQADV 6Q89 ILE A 508 UNP A0A1D3HNX MET 510 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLU GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET LSS A 901 31 HET EDO A 902 4 HET ZN A 903 1 HET MG A 904 1 HETNAM LSS 5'-O-(L-LEUCYLSULFAMOYL)ADENOSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN LSS 5-O-N-LEUCYL-SULFAMOYLADENOSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 LSS C16 H25 N7 O7 S FORMUL 3 EDO C2 H6 O2 FORMUL 4 ZN ZN 2+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *208(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 94 1 12 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLU A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 ASP A 238 LYS A 241 5 4 HELIX 13 AB4 ARG A 258 ALA A 265 5 8 HELIX 14 AB5 HIS A 274 ALA A 281 1 8 HELIX 15 AB6 LYS A 284 ALA A 296 1 13 HELIX 16 AB7 ALA A 300 THR A 306 1 7 HELIX 17 AB8 ASP A 351 ASN A 362 1 12 HELIX 18 AB9 GLN A 382 ASP A 387 5 6 HELIX 19 AC1 SER A 396 ASP A 400 5 5 HELIX 20 AC2 ASP A 403 GLN A 418 1 16 HELIX 21 AC3 PRO A 458 LEU A 462 5 5 HELIX 22 AC4 SER A 477 LYS A 481 5 5 HELIX 23 AC5 MET A 482 TYR A 486 1 5 HELIX 24 AC6 THR A 506 SER A 511 1 6 HELIX 25 AC7 TRP A 512 TYR A 517 1 6 HELIX 26 AC8 SER A 528 GLY A 536 1 9 HELIX 27 AC9 GLY A 544 ALA A 548 5 5 HELIX 28 AD1 ILE A 549 GLU A 565 1 17 HELIX 29 AD2 ASN A 601 VAL A 605 5 5 HELIX 30 AD3 ASP A 644 GLY A 653 1 10 HELIX 31 AD4 GLY A 653 ALA A 665 1 13 HELIX 32 AD5 SER A 674 GLN A 698 1 25 HELIX 33 AD6 SER A 713 ARG A 736 1 24 HELIX 34 AD7 GLN A 739 LYS A 756 1 18 HELIX 35 AD8 SER A 761 TRP A 780 1 20 HELIX 36 AD9 VAL A 783 ASN A 795 1 13 HELIX 37 AE1 LYS A 798 GLY A 803 1 6 HELIX 38 AE2 ASP A 808 VAL A 813 5 6 HELIX 39 AE3 SER A 838 ASN A 849 1 12 HELIX 40 AE4 ASN A 849 PHE A 855 1 7 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 VAL A 538 ILE A 542 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 PHE A 574 LEU A 578 1 O GLU A 575 N VAL A 538 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 VAL A 125 ALA A 126 1 O VAL A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 LEU A 166 0 SHEET 2 AA3 4 VAL A 149 ASP A 159 -1 N ASN A 157 O LEU A 166 SHEET 3 AA3 4 GLU A 184 PHE A 193 -1 O GLU A 184 N TRP A 158 SHEET 4 AA3 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA4 2 VAL A 171 ILE A 172 0 SHEET 2 AA4 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA5 6 PHE A 251 THR A 256 0 SHEET 2 AA5 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA5 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA5 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA5 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA6 3 PHE A 251 THR A 256 0 SHEET 2 AA6 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA6 3 GLY A 421 TYR A 427 -1 O LYS A 424 N GLY A 229 SHEET 1 AA7 2 ILE A 369 ALA A 370 0 SHEET 2 AA7 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA8 2 SER A 435 ARG A 436 0 SHEET 2 AA8 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA9 4 GLY A 453 PRO A 456 0 SHEET 2 AA9 4 ILE A 446 CYS A 449 -1 N VAL A 447 O VAL A 455 SHEET 3 AA9 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA9 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AB1 3 ILE A 629 LYS A 634 0 SHEET 2 AB1 3 VAL A 583 TYR A 588 -1 N CYS A 585 O GLU A 633 SHEET 3 AB1 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 SHEET 1 AB2 4 LYS A 826 VAL A 833 0 SHEET 2 AB2 4 ILE A 817 VAL A 823 -1 N VAL A 821 O ARG A 828 SHEET 3 AB2 4 LEU A 871 ILE A 874 1 O VAL A 872 N GLN A 822 SHEET 4 AB2 4 ILE A 864 VAL A 867 -1 N VAL A 867 O LEU A 871 LINK SG CYS A 449 ZN ZN A 903 1555 1555 2.41 LINK SG CYS A 452 ZN ZN A 903 1555 1555 2.28 LINK SG CYS A 490 ZN ZN A 903 1555 1555 2.40 LINK SG CYS A 493 ZN ZN A 903 1555 1555 2.28 LINK MG MG A 904 O HOH A1172 1555 3454 1.91 LINK MG MG A 904 O HOH A1207 1555 1555 1.97 CISPEP 1 LEU A 462 PRO A 463 0 5.35 SITE 1 AC1 25 MET A 40 PHE A 41 PRO A 42 TYR A 43 SITE 2 AC1 25 HIS A 49 GLY A 51 HIS A 52 ASN A 55 SITE 3 AC1 25 TYR A 56 ASP A 80 TYR A 541 GLY A 543 SITE 4 AC1 25 GLY A 544 GLU A 546 HIS A 547 HIS A 551 SITE 5 AC1 25 GLN A 580 GLY A 581 MET A 582 VAL A 583 SITE 6 AC1 25 LYS A 634 MET A 635 HOH A1004 HOH A1088 SITE 7 AC1 25 HOH A1121 SITE 1 AC2 4 ARG A 777 PRO A 805 THR A 806 HOH A1015 SITE 1 AC3 4 CYS A 449 CYS A 452 CYS A 490 CYS A 493 SITE 1 AC4 2 HOH A1172 HOH A1207 CRYST1 48.942 82.935 228.519 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004376 0.00000