HEADER TRANSFERASE 15-DEC-18 6Q8P TITLE STRUCTURE OF CLK1 WITH BOUND N-METHYL-10-NITROPYRIDO[3,4-G]QUINAZOLIN- TITLE 2 2-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CDC-LIKE KINASE 1; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK1, CLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, TYROSINE-PROTEIN KEYWDS 2 KINASE, NUCLEUS, INHIBITOR, STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.C.JOERGER,D.CHATTERJEE,M.SCHROEDER,H.TAZARKI,W.ZEINYEH,Y.J.ESVAN, AUTHOR 2 J.KHIARI,B.JOSSELIN,B.BARATTE,S.BACH,S.RUCHAUD,F.ANIZON,F.GIRAUD, AUTHOR 3 P.MOREAU,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 24-JAN-24 6Q8P 1 REMARK REVDAT 1 20-FEB-19 6Q8P 0 JRNL AUTH H.TAZARKI,W.ZEINYEH,Y.J.ESVAN,S.KNAPP,D.CHATTERJEE, JRNL AUTH 2 M.SCHRODER,A.C.JOERGER,J.KHIARI,B.JOSSELIN,B.BARATTE,S.BACH, JRNL AUTH 3 S.RUCHAUD,F.ANIZON,F.GIRAUD,P.MOREAU JRNL TITL NEW PYRIDO[3,4-G]QUINAZOLINE DERIVATIVES AS CLK1 AND DYRK1A JRNL TITL 2 INHIBITORS: SYNTHESIS, BIOLOGICAL EVALUATION AND BINDING JRNL TITL 3 MODE ANALYSIS. JRNL REF EUR J MED CHEM V. 166 304 2019 JRNL REFN ISSN 1768-3254 JRNL PMID 30731399 JRNL DOI 10.1016/J.EJMECH.2019.01.052 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3954 - 5.9960 0.98 2847 150 0.1818 0.1933 REMARK 3 2 5.9960 - 4.7609 1.00 2848 141 0.1742 0.1904 REMARK 3 3 4.7609 - 4.1595 1.00 2845 151 0.1615 0.2184 REMARK 3 4 4.1595 - 3.7794 1.00 2838 150 0.1863 0.2527 REMARK 3 5 3.7794 - 3.5086 1.00 2833 139 0.2050 0.2586 REMARK 3 6 3.5086 - 3.3018 1.00 2856 138 0.2334 0.2923 REMARK 3 7 3.3018 - 3.1365 1.00 2807 160 0.2527 0.3462 REMARK 3 8 3.1365 - 3.0000 1.00 2817 156 0.2964 0.3437 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8241 REMARK 3 ANGLE : 0.557 11181 REMARK 3 CHIRALITY : 0.043 1234 REMARK 3 PLANARITY : 0.004 1488 REMARK 3 DIHEDRAL : 14.367 4904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Q8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23961 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5V1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 7-8 MG/ML PROTEIN IN REMARK 280 30 MM HEPES, PH 7.5, 300 MM NACL, 50 MM ARGININE/GLUTAMINE MIX 1: REMARK 280 1, 0.5 MM TCEP, AND 1% V/V GLYCEROL. RESERVOIR SOLUTION: 29% (V/ REMARK 280 V) 1,2 PROPANEDIOL, 0.08 M NA/K PHOSPHATE. CRYSTALS WERE SOAKED REMARK 280 FOR 72 H IN RESERVOIR SOLUTION COMPLEMENTED WITH 1 MM COMPOUND REMARK 280 AND 20% ETHYLENE GLYCOL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.77650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 341 REMARK 465 SER A 483 REMARK 465 ILE A 484 REMARK 465 LYS B 308 REMARK 465 ILE B 309 REMARK 465 LYS B 310 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 ILE B 484 REMARK 465 SER C -1 REMARK 465 ILE C 309 REMARK 465 LYS C 310 REMARK 465 SER C 341 REMARK 465 ILE C 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 148 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 174 CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 382 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 LYS A 400 CE NZ REMARK 470 ARG A 407 NE CZ NH1 NH2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 HIS A 413 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 414 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 416 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 TYR B 305 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 311 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 312 CG OD1 OD2 REMARK 470 LEU B 339 CG CD1 CD2 REMARK 470 ARG B 343 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 346 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 382 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 385 CG CD CE NZ REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 ILE B 403 CG1 CG2 CD1 REMARK 470 LYS B 405 CG CD CE NZ REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 HIS B 413 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 414 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 415 CG OD1 OD2 REMARK 470 ARG B 416 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 418 CG OD1 OD2 REMARK 470 ARG B 427 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 428 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 431 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 ARG C 204 NE CZ NH1 NH2 REMARK 470 ASN C 306 CG OD1 ND2 REMARK 470 LYS C 308 CG CD CE NZ REMARK 470 ARG C 311 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 314 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 343 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 400 CG CD CE NZ REMARK 470 ARG C 407 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 415 CG OD1 OD2 REMARK 470 ARG C 416 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 427 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 437 CG CD CE NZ REMARK 470 LYS C 482 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 148 -6.10 -59.82 REMARK 500 ARG A 160 -63.62 -135.87 REMARK 500 VAL A 164 -70.57 -108.40 REMARK 500 ALA A 183 36.37 -149.57 REMARK 500 ASN A 282 30.23 -98.34 REMARK 500 THR A 287 -19.47 69.43 REMARK 500 ASP A 325 94.11 56.99 REMARK 500 ALA A 353 75.55 55.43 REMARK 500 SER A 357 -153.19 -150.88 REMARK 500 PHE A 379 73.84 -118.20 REMARK 500 LYS A 408 74.61 -102.79 REMARK 500 SER A 424 -71.16 -70.50 REMARK 500 LEU A 458 32.44 -96.63 REMARK 500 ARG B 160 -56.20 -158.60 REMARK 500 VAL B 164 -63.84 -99.03 REMARK 500 ASN B 195 49.87 -92.79 REMARK 500 ASP B 217 76.88 -118.63 REMARK 500 LEU B 244 -166.74 -121.57 REMARK 500 THR B 287 -22.76 72.95 REMARK 500 ASP B 325 98.63 66.42 REMARK 500 TYR B 345 44.39 -106.40 REMARK 500 SER B 357 -153.99 -164.13 REMARK 500 PHE B 379 74.44 -112.94 REMARK 500 HIS B 414 62.08 60.93 REMARK 500 ASP B 415 17.23 58.56 REMARK 500 TYR B 460 -72.52 -71.55 REMARK 500 ARG C 160 -47.05 -160.13 REMARK 500 ALA C 183 51.55 -154.15 REMARK 500 GLU C 229 148.44 -172.89 REMARK 500 THR C 287 -23.21 69.57 REMARK 500 ALA C 304 148.12 -173.21 REMARK 500 ASP C 325 97.23 59.41 REMARK 500 SER C 337 -177.95 -69.42 REMARK 500 SER C 357 -150.13 -157.89 REMARK 500 HIS C 382 -41.34 -137.99 REMARK 500 LYS C 408 70.69 -68.20 REMARK 500 LEU C 458 31.58 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HQB A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HQB B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HQB C 501 DBREF 6Q8P A 148 484 UNP P49759 CLK1_HUMAN 148 484 DBREF 6Q8P B 148 484 UNP P49759 CLK1_HUMAN 148 484 DBREF 6Q8P C 148 484 UNP P49759 CLK1_HUMAN 148 484 SEQADV 6Q8P SER A -1 UNP P49759 EXPRESSION TAG SEQADV 6Q8P MET A 0 UNP P49759 EXPRESSION TAG SEQADV 6Q8P ALA A 432 UNP P49759 ARG 432 CONFLICT SEQADV 6Q8P SER B -1 UNP P49759 EXPRESSION TAG SEQADV 6Q8P MET B 0 UNP P49759 EXPRESSION TAG SEQADV 6Q8P ALA B 432 UNP P49759 ARG 432 CONFLICT SEQADV 6Q8P SER C -1 UNP P49759 EXPRESSION TAG SEQADV 6Q8P MET C 0 UNP P49759 EXPRESSION TAG SEQADV 6Q8P ALA C 432 UNP P49759 ARG 432 CONFLICT SEQRES 1 A 339 SER MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER SEQRES 2 A 339 ALA ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA SEQRES 3 A 339 PHE GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY SEQRES 4 A 339 GLY ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP SEQRES 5 A 339 ARG TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU SEQRES 6 A 339 GLU HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG SEQRES 7 A 339 CYS VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS SEQRES 8 A 339 ILE CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR SEQRES 9 A 339 ASP PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU SEQRES 10 A 339 ASP HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER SEQRES 11 A 339 VAL ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP SEQRES 12 A 339 LEU LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR SEQRES 13 A 339 THR GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG SEQRES 14 A 339 THR LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SEQRES 15 A 339 SER ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SEQRES 16 A 339 SER THR ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA SEQRES 17 A 339 LEU GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY SEQRES 18 A 339 CYS ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE SEQRES 19 A 339 PRO THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU SEQRES 20 A 339 ARG ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS SEQRES 21 A 339 THR ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP SEQRES 22 A 339 TRP ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG SEQRES 23 A 339 ALA CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP SEQRES 24 A 339 VAL GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET SEQRES 25 A 339 LEU GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU SEQRES 26 A 339 ALA LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER SEQRES 27 A 339 ILE SEQRES 1 B 339 SER MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER SEQRES 2 B 339 ALA ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA SEQRES 3 B 339 PHE GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY SEQRES 4 B 339 GLY ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP SEQRES 5 B 339 ARG TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU SEQRES 6 B 339 GLU HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG SEQRES 7 B 339 CYS VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS SEQRES 8 B 339 ILE CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR SEQRES 9 B 339 ASP PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU SEQRES 10 B 339 ASP HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER SEQRES 11 B 339 VAL ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP SEQRES 12 B 339 LEU LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR SEQRES 13 B 339 THR GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG SEQRES 14 B 339 THR LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SEQRES 15 B 339 SER ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SEQRES 16 B 339 SER THR ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA SEQRES 17 B 339 LEU GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY SEQRES 18 B 339 CYS ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE SEQRES 19 B 339 PRO THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU SEQRES 20 B 339 ARG ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS SEQRES 21 B 339 THR ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP SEQRES 22 B 339 TRP ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG SEQRES 23 B 339 ALA CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP SEQRES 24 B 339 VAL GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET SEQRES 25 B 339 LEU GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU SEQRES 26 B 339 ALA LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER SEQRES 27 B 339 ILE SEQRES 1 C 339 SER MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER SEQRES 2 C 339 ALA ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA SEQRES 3 C 339 PHE GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY SEQRES 4 C 339 GLY ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP SEQRES 5 C 339 ARG TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU SEQRES 6 C 339 GLU HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG SEQRES 7 C 339 CYS VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS SEQRES 8 C 339 ILE CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR SEQRES 9 C 339 ASP PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU SEQRES 10 C 339 ASP HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER SEQRES 11 C 339 VAL ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP SEQRES 12 C 339 LEU LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR SEQRES 13 C 339 THR GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG SEQRES 14 C 339 THR LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SEQRES 15 C 339 SER ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SEQRES 16 C 339 SER THR ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA SEQRES 17 C 339 LEU GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY SEQRES 18 C 339 CYS ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE SEQRES 19 C 339 PRO THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU SEQRES 20 C 339 ARG ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS SEQRES 21 C 339 THR ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP SEQRES 22 C 339 TRP ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG SEQRES 23 C 339 ALA CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP SEQRES 24 C 339 VAL GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET SEQRES 25 C 339 LEU GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU SEQRES 26 C 339 ALA LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER SEQRES 27 C 339 ILE HET HQB A 501 19 HET K A 502 1 HET HQB B 501 19 HET HQB C 501 19 HETNAM HQB ~{N}-METHYL-10-NITRO-PYRIDO[3,4-G]QUINAZOLIN-2-AMINE HETNAM K POTASSIUM ION FORMUL 4 HQB 3(C12 H9 N5 O2) FORMUL 5 K K 1+ FORMUL 8 HOH *8(H2 O) HELIX 1 AA1 LYS A 182 GLY A 184 5 3 HELIX 2 AA2 VAL A 196 ASP A 217 1 22 HELIX 3 AA3 SER A 247 ASN A 255 1 9 HELIX 4 AA4 ARG A 261 ASN A 282 1 22 HELIX 5 AA5 LYS A 290 GLU A 292 5 3 HELIX 6 AA6 THR A 342 ARG A 346 5 5 HELIX 7 AA7 ALA A 347 LEU A 352 1 6 HELIX 8 AA8 GLN A 358 GLY A 375 1 18 HELIX 9 AA9 ASP A 383 LEU A 395 1 13 HELIX 10 AB1 PRO A 399 GLN A 404 1 6 HELIX 11 AB2 SER A 424 CYS A 433 1 10 HELIX 12 AB3 PRO A 435 MET A 440 5 6 HELIX 13 AB4 ASP A 444 LEU A 458 1 15 HELIX 14 AB5 THR A 467 LEU A 472 1 6 HELIX 15 AB6 LYS A 473 LYS A 481 5 9 HELIX 16 AB7 MET B 0 CYS B 151 5 5 HELIX 17 AB8 VAL B 196 ASP B 217 1 22 HELIX 18 AB9 SER B 247 ASN B 255 1 9 HELIX 19 AC1 ARG B 261 SER B 281 1 21 HELIX 20 AC2 LYS B 290 GLU B 292 5 3 HELIX 21 AC3 ALA B 347 LEU B 352 1 6 HELIX 22 AC4 GLN B 358 GLY B 375 1 18 HELIX 23 AC5 ASP B 383 GLY B 396 1 14 HELIX 24 AC6 PRO B 399 THR B 406 1 8 HELIX 25 AC7 LYS B 408 PHE B 412 5 5 HELIX 26 AC8 SER B 423 ALA B 432 1 10 HELIX 27 AC9 PRO B 435 MET B 440 5 6 HELIX 28 AD1 ASP B 444 LEU B 458 1 15 HELIX 29 AD2 THR B 467 LEU B 472 1 6 HELIX 30 AD3 LYS B 473 LYS B 481 5 9 HELIX 31 AD4 MET C 0 CYS C 151 5 5 HELIX 32 AD5 VAL C 196 ASP C 217 1 22 HELIX 33 AD6 SER C 247 ASN C 255 1 9 HELIX 34 AD7 ARG C 261 SER C 281 1 21 HELIX 35 AD8 LYS C 290 GLU C 292 5 3 HELIX 36 AD9 THR C 342 ARG C 346 5 5 HELIX 37 AE1 ALA C 347 LEU C 352 1 6 HELIX 38 AE2 GLN C 358 GLY C 375 1 18 HELIX 39 AE3 ASP C 383 GLY C 396 1 14 HELIX 40 AE4 PRO C 399 THR C 406 1 8 HELIX 41 AE5 SER C 423 CYS C 433 1 11 HELIX 42 AE6 PRO C 435 MET C 440 5 6 HELIX 43 AE7 ASP C 444 LEU C 458 1 15 HELIX 44 AE8 THR C 467 LEU C 472 1 6 HELIX 45 AE9 LYS C 473 LYS C 481 5 9 SHEET 1 AA1 6 VAL A 156 LEU A 157 0 SHEET 2 AA1 6 TYR A 161 GLY A 168 -1 O TYR A 161 N LEU A 157 SHEET 3 AA1 6 GLY A 173 ASP A 180 -1 O ILE A 179 N GLU A 162 SHEET 4 AA1 6 HIS A 187 VAL A 193 -1 O VAL A 190 N VAL A 176 SHEET 5 AA1 6 HIS A 236 PHE A 241 -1 O ILE A 239 N LYS A 191 SHEET 6 AA1 6 MET A 227 HIS A 233 -1 N LEU A 228 O VAL A 240 SHEET 1 AA2 2 LEU A 284 THR A 285 0 SHEET 2 AA2 2 THR A 330 TYR A 331 -1 O THR A 330 N THR A 285 SHEET 1 AA3 2 ILE A 294 PHE A 296 0 SHEET 2 AA3 2 ILE A 321 VAL A 323 -1 O LYS A 322 N LEU A 295 SHEET 1 AA4 2 TYR A 301 ASN A 306 0 SHEET 2 AA4 2 ARG A 311 LEU A 316 -1 O ARG A 311 N ASN A 306 SHEET 1 AA5 6 VAL B 156 LEU B 157 0 SHEET 2 AA5 6 TYR B 161 GLU B 169 -1 O TYR B 161 N LEU B 157 SHEET 3 AA5 6 GLY B 173 ASP B 180 -1 O GLU B 177 N VAL B 164 SHEET 4 AA5 6 HIS B 187 VAL B 193 -1 O VAL B 190 N VAL B 176 SHEET 5 AA5 6 HIS B 236 GLU B 242 -1 O PHE B 241 N ALA B 189 SHEET 6 AA5 6 MET B 227 HIS B 233 -1 N LEU B 228 O VAL B 240 SHEET 1 AA6 2 LEU B 284 THR B 285 0 SHEET 2 AA6 2 THR B 330 TYR B 331 -1 O THR B 330 N THR B 285 SHEET 1 AA7 2 ILE B 294 PHE B 296 0 SHEET 2 AA7 2 ILE B 321 VAL B 323 -1 O LYS B 322 N LEU B 295 SHEET 1 AA8 2 ALA B 304 TYR B 305 0 SHEET 2 AA8 2 ASP B 312 GLU B 313 -1 O GLU B 313 N ALA B 304 SHEET 1 AA9 6 VAL C 156 LEU C 157 0 SHEET 2 AA9 6 TYR C 161 GLY C 170 -1 O TYR C 161 N LEU C 157 SHEET 3 AA9 6 GLY C 173 ASP C 180 -1 O GLU C 177 N VAL C 164 SHEET 4 AA9 6 HIS C 187 VAL C 193 -1 O ILE C 192 N LYS C 174 SHEET 5 AA9 6 ILE C 237 GLU C 242 -1 O PHE C 241 N ALA C 189 SHEET 6 AA9 6 MET C 227 GLU C 232 -1 N GLU C 229 O VAL C 240 SHEET 1 AB1 2 LEU C 284 THR C 285 0 SHEET 2 AB1 2 THR C 330 TYR C 331 -1 O THR C 330 N THR C 285 SHEET 1 AB2 2 ILE C 294 PHE C 296 0 SHEET 2 AB2 2 ILE C 321 VAL C 323 -1 O LYS C 322 N LEU C 295 SHEET 1 AB3 2 TYR C 301 TYR C 305 0 SHEET 2 AB3 2 ASP C 312 LEU C 316 -1 O THR C 315 N THR C 302 LINK OG1 THR A 338 K K A 502 1555 1555 2.94 SITE 1 AC1 10 LEU A 167 VAL A 175 ALA A 189 LYS A 191 SITE 2 AC1 10 PHE A 241 GLU A 242 LEU A 243 LEU A 244 SITE 3 AC1 10 LEU A 295 ASP A 325 SITE 1 AC2 3 THR A 338 HIS B 335 THR B 338 SITE 1 AC3 9 PHE B 172 VAL B 175 ALA B 189 LYS B 191 SITE 2 AC3 9 PHE B 241 GLU B 242 LEU B 244 LEU B 295 SITE 3 AC3 9 ASP B 325 SITE 1 AC4 7 VAL C 175 ALA C 189 LYS C 191 PHE C 241 SITE 2 AC4 7 GLU C 242 LEU C 244 LEU C 295 CRYST1 56.791 117.553 91.911 90.00 99.00 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017608 0.000000 0.002788 0.00000 SCALE2 0.000000 0.008507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011016 0.00000