HEADER MEMBRANE PROTEIN 19-DEC-18 6QAN TITLE STRUCTURE DETERMINATION OF N-TERMINAL FRAGMENT OF UL49.5 PROTEIN FROM TITLE 2 BOVINE HERPESVIRUS 1 BY NMR SPECTROSCOPY AND MOLECULAR DYNAMICS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN N; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UL49.5,VIRION PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BOVINE ALPHAHERPESVIRUS 1; SOURCE 4 ORGANISM_TAXID: 10320 KEYWDS TRANSMEMBRANE PROTEIN, NMR SPECTROSCOPY, HERPESVIRUS, MEMBRANE KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR N.KARSKA,S.RODZIEWICZ-MOTOWIDLO REVDAT 5 15-NOV-23 6QAN 1 REMARK REVDAT 4 14-JUN-23 6QAN 1 JRNL REMARK REVDAT 3 08-MAY-19 6QAN 1 REMARK REVDAT 2 06-MAR-19 6QAN 1 JRNL REVDAT 1 27-FEB-19 6QAN 0 JRNL AUTH N.KARSKA,M.GRAUL,E.SIKORSKA,I.ZHUKOV,M.J.SLUSARZ, JRNL AUTH 2 F.KASPRZYKOWSKI,A.D.LIPINSKA,S.RODZIEWICZ-MOTOWIDLO JRNL TITL STRUCTURE DETERMINATION OF UL49.5 TRANSMEMBRANE PROTEIN FROM JRNL TITL 2 BOVINE HERPESVIRUS 1 BY NMR SPECTROSCOPY AND MOLECULAR JRNL TITL 3 DYNAMICS. JRNL REF BIOCHIM BIOPHYS ACTA V.1861 926 2019 JRNL REF 2 BIOMEMBR JRNL REFN ESSN 1879-2642 JRNL PMID 30772281 JRNL DOI 10.1016/J.BBAMEM.2019.02.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200012374. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 1.0 MM N.BHV, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 2D DQF-COSY; REMARK 210 2D ROESY; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.114, NMRPIPE, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 16 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 9 -64.54 -95.59 REMARK 500 1 ABA A 21 88.59 41.28 REMARK 500 1 VAL A 26 77.98 40.40 REMARK 500 2 ASP A 2 -49.05 -133.65 REMARK 500 2 ARG A 9 -64.70 -98.36 REMARK 500 2 ABA A 21 92.11 36.97 REMARK 500 2 VAL A 26 75.99 42.67 REMARK 500 3 ABA A 21 98.00 37.24 REMARK 500 3 VAL A 26 74.19 44.39 REMARK 500 4 ASP A 2 -48.69 -134.47 REMARK 500 4 ASP A 6 -1.43 -147.46 REMARK 500 4 ARG A 9 -63.07 -99.19 REMARK 500 4 ABA A 21 87.10 35.39 REMARK 500 4 VAL A 26 79.97 42.45 REMARK 500 5 ASP A 6 -4.55 -147.86 REMARK 500 5 ABA A 21 98.07 34.92 REMARK 500 5 VAL A 26 74.29 43.46 REMARK 500 6 ARG A 9 -65.09 -92.26 REMARK 500 6 ABA A 21 90.82 37.48 REMARK 500 6 VAL A 26 77.95 42.63 REMARK 500 7 ARG A 9 -63.84 -93.58 REMARK 500 7 ABA A 21 88.16 38.36 REMARK 500 7 VAL A 26 76.47 44.25 REMARK 500 8 ARG A 9 -66.15 -91.63 REMARK 500 8 ABA A 21 79.88 39.14 REMARK 500 8 VAL A 26 81.58 42.01 REMARK 500 9 ASP A 2 -47.90 -130.83 REMARK 500 9 ARG A 9 -62.89 -97.72 REMARK 500 9 ABA A 21 85.81 38.63 REMARK 500 9 VAL A 26 77.32 43.34 REMARK 500 10 ARG A 9 -63.47 -91.49 REMARK 500 10 ABA A 21 88.74 39.58 REMARK 500 10 VAL A 26 77.89 41.61 REMARK 500 11 ABA A 21 83.17 41.98 REMARK 500 11 VAL A 26 78.54 40.16 REMARK 500 12 ARG A 9 -65.01 -91.99 REMARK 500 12 ABA A 21 80.31 38.91 REMARK 500 12 TYR A 22 18.43 81.06 REMARK 500 12 VAL A 26 80.10 43.35 REMARK 500 13 ASP A 2 -48.43 -131.89 REMARK 500 13 ASP A 6 -1.62 -147.36 REMARK 500 13 ARG A 9 -65.01 -92.27 REMARK 500 13 ABA A 21 88.02 34.86 REMARK 500 13 VAL A 26 80.08 44.81 REMARK 500 14 ARG A 9 -62.82 -95.30 REMARK 500 14 ABA A 21 94.28 36.05 REMARK 500 14 VAL A 26 77.68 43.50 REMARK 500 15 ASP A 2 -49.86 -135.45 REMARK 500 15 ASP A 6 -0.77 -145.54 REMARK 500 15 ABA A 21 84.63 38.16 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34339 RELATED DB: BMRB REMARK 900 STRUCTURE DETERMINATION OF N-TERMINAL FRAGMENT OF UL49.5 PROTEIN REMARK 900 FROM BOVINE HERPESVIRUS 1 BY NMR SPECTROSCOPY AND MOLECULAR DYNAMICS DBREF 6QAN A 1 35 UNP Q89806 Q89806_9ALPH 22 56 SEQADV 6QAN NLE A 8 UNP Q89806 MET 29 CONFLICT SEQADV 6QAN NLE A 14 UNP Q89806 MET 35 CONFLICT SEQADV 6QAN ABA A 21 UNP Q89806 CYS 42 CONFLICT SEQADV 6QAN NH2 A 36 UNP Q89806 AMIDATION SEQRES 1 A 36 ARG ASP PRO LEU LEU ASP ALA NLE ARG ARG GLU GLY ALA SEQRES 2 A 36 NLE ASP PHE TRP SER ALA GLY ABA TYR ALA ARG GLY VAL SEQRES 3 A 36 PRO LEU SER GLU PRO PRO GLN ALA LEU NH2 HET NLE A 8 19 HET NLE A 14 19 HET ABA A 21 13 HET NH2 A 36 3 HETNAM NLE NORLEUCINE HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM NH2 AMINO GROUP FORMUL 1 NLE 2(C6 H13 N O2) FORMUL 1 ABA C4 H9 N O2 FORMUL 1 NH2 H2 N HELIX 1 AA1 ASP A 6 SER A 18 1 13 HELIX 2 AA2 VAL A 26 ALA A 34 5 9 LINK C ALA A 7 N NLE A 8 1555 1555 1.35 LINK C NLE A 8 N ARG A 9 1555 1555 1.34 LINK C ALA A 13 N NLE A 14 1555 1555 1.34 LINK C NLE A 14 N ASP A 15 1555 1555 1.34 LINK C GLY A 20 N ABA A 21 1555 1555 1.34 LINK C ABA A 21 N TYR A 22 1555 1555 1.34 LINK C LEU A 35 N NH2 A 36 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1