HEADER HYDROLASE 21-DEC-18 6QBH TITLE CRYSTAL STRUCTURE OF HUMAN CATHEPSIN D IN COMPLEX WITH MACROCYCLIC TITLE 2 INHIBITOR 33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN D; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.23.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CATHEPSIN D; COMPND 7 CHAIN: B; COMPND 8 EC: 3.4.23.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS ASPARTIC PROTEASE, PEPTIDOMIMETIC INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BRYNDA,R.HOUSTECKA,P.MAJER,M.MARES REVDAT 5 24-JAN-24 6QBH 1 HETSYN REVDAT 4 29-JUL-20 6QBH 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 11-MAR-20 6QBH 1 JRNL REVDAT 2 19-FEB-20 6QBH 1 JRNL REVDAT 1 29-JAN-20 6QBH 0 JRNL AUTH R.HOUSTECKA,M.HADZIMA,J.FANFRLIK,J.BRYNDA,L.PALLOVA, JRNL AUTH 2 I.HANOVA,H.MERTLIKOVA-KAISEROVA,M.LEPSIK,M.HORN,M.SMRCINA, JRNL AUTH 3 P.MAJER,M.MARES JRNL TITL BIOMIMETIC MACROCYCLIC INHIBITORS OF HUMAN CATHEPSIN D: JRNL TITL 2 STRUCTURE-ACTIVITY RELATIONSHIP AND BINDING MODE ANALYSIS. JRNL REF J.MED.CHEM. V. 63 1576 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32003991 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01351 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 32236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6QBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.96400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3350 0.2 M LITHIUM SULPHATE REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.12200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.06800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.12200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.06800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.79000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.12200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.06800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.12200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.06800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 275 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 674 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 LEU B 292 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 347 N ARG B 347 CA 1.345 REMARK 500 ARG B 347 CA ARG B 347 C 0.681 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 328 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 347 C - N - CA ANGL. DEV. = -23.6 DEGREES REMARK 500 ARG B 347 N - CA - CB ANGL. DEV. = -27.3 DEGREES REMARK 500 ARG B 347 N - CA - C ANGL. DEV. = -50.5 DEGREES REMARK 500 ARG B 347 CA - C - O ANGL. DEV. = 20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 18.08 58.29 REMARK 500 ASN A 70 -67.11 -125.98 REMARK 500 PRO A 95 -175.02 -65.86 REMARK 500 ALA B 204 -82.38 -150.38 REMARK 500 LEU B 256 -80.96 -101.86 REMARK 500 GLN B 258 57.08 36.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 673 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 674 DISTANCE = 6.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QBG RELATED DB: PDB DBREF 6QBH A 1 97 UNP P07339 CATD_HUMAN 65 161 DBREF 6QBH B 107 347 UNP P07339 CATD_HUMAN 171 411 SEQRES 1 A 97 GLY PRO ILE PRO GLU VAL LEU LYS ASN TYR MET ASP ALA SEQRES 2 A 97 GLN TYR TYR GLY GLU ILE GLY ILE GLY THR PRO PRO GLN SEQRES 3 A 97 CYS PHE THR VAL VAL PHE ASP THR GLY SER SER ASN LEU SEQRES 4 A 97 TRP VAL PRO SER ILE HIS CYS LYS LEU LEU ASP ILE ALA SEQRES 5 A 97 CYS TRP ILE HIS HIS LYS TYR ASN SER ASP LYS SER SER SEQRES 6 A 97 THR TYR VAL LYS ASN GLY THR SER PHE ASP ILE HIS TYR SEQRES 7 A 97 GLY SER GLY SER LEU SER GLY TYR LEU SER GLN ASP THR SEQRES 8 A 97 VAL SER VAL PRO CYS GLN SEQRES 1 B 241 GLY VAL LYS VAL GLU ARG GLN VAL PHE GLY GLU ALA THR SEQRES 2 B 241 LYS GLN PRO GLY ILE THR PHE ILE ALA ALA LYS PHE ASP SEQRES 3 B 241 GLY ILE LEU GLY MET ALA TYR PRO ARG ILE SER VAL ASN SEQRES 4 B 241 ASN VAL LEU PRO VAL PHE ASP ASN LEU MET GLN GLN LYS SEQRES 5 B 241 LEU VAL ASP GLN ASN ILE PHE SER PHE TYR LEU SER ARG SEQRES 6 B 241 ASP PRO ASP ALA GLN PRO GLY GLY GLU LEU MET LEU GLY SEQRES 7 B 241 GLY THR ASP SER LYS TYR TYR LYS GLY SER LEU SER TYR SEQRES 8 B 241 LEU ASN VAL THR ARG LYS ALA TYR TRP GLN VAL HIS LEU SEQRES 9 B 241 ASP GLN VAL GLU VAL ALA SER GLY LEU THR LEU CYS LYS SEQRES 10 B 241 GLU GLY CYS GLU ALA ILE VAL ASP THR GLY THR SER LEU SEQRES 11 B 241 MET VAL GLY PRO VAL ASP GLU VAL ARG GLU LEU GLN LYS SEQRES 12 B 241 ALA ILE GLY ALA VAL PRO LEU ILE GLN GLY GLU TYR MET SEQRES 13 B 241 ILE PRO CYS GLU LYS VAL SER THR LEU PRO ALA ILE THR SEQRES 14 B 241 LEU LYS LEU GLY GLY LYS GLY TYR LYS LEU SER PRO GLU SEQRES 15 B 241 ASP TYR THR LEU LYS VAL SER GLN ALA GLY LYS THR LEU SEQRES 16 B 241 CYS LEU SER GLY PHE MET GLY MET ASP ILE PRO PRO PRO SEQRES 17 B 241 SER GLY PRO LEU TRP ILE LEU GLY ASP VAL PHE ILE GLY SEQRES 18 B 241 ARG TYR TYR THR VAL PHE ASP ARG ASP ASN ASN ARG VAL SEQRES 19 B 241 GLY PHE ALA GLU ALA ALA ARG HET NAG C 1 14 HET NAG C 2 14 HET S43 A 103 36 HET NAG B 401 14 HET SO4 B 402 5 HET DMS B 403 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM S43 (4~{S},5~{S},9~{S})-5-OXIDANYL-4-(PHENYLMETHYL)-9- HETNAM 2 S43 PROPAN-2-YL-1-OXA-3,8,11-TRIAZACYCLODOCOSANE-2,7,10- HETNAM 3 S43 TRIONE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 S43 C28 H45 N3 O5 FORMUL 6 SO4 O4 S 2- FORMUL 7 DMS C2 H6 O S FORMUL 8 HOH *249(H2 O) HELIX 1 AA1 ASP A 50 ILE A 55 1 6 HELIX 2 AA2 ASN A 60 SER A 64 5 5 HELIX 3 AA3 TYR B 139 VAL B 147 5 9 HELIX 4 AA4 PRO B 149 GLN B 157 1 9 HELIX 5 AA5 ASP B 187 LYS B 189 5 3 HELIX 6 AA6 PRO B 240 GLY B 252 1 13 HELIX 7 AA7 PRO B 264 LEU B 271 5 8 HELIX 8 AA8 SER B 286 TYR B 290 1 5 HELIX 9 AA9 GLY B 322 ARG B 328 1 7 SHEET 1 AA1 9 VAL A 68 HIS A 77 0 SHEET 2 AA1 9 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 AA1 9 GLN A 14 ILE A 21 -1 N GLY A 20 O SER A 93 SHEET 4 AA1 9 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 5 AA1 9 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 6 AA1 9 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 7 AA1 9 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 8 AA1 9 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 9 AA1 9 TYR B 191 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 AA213 VAL A 68 HIS A 77 0 SHEET 2 AA213 SER A 82 VAL A 94 -1 O LEU A 87 N GLY A 71 SHEET 3 AA213 VAL B 108 LYS B 120 -1 O GLU B 117 N TYR A 86 SHEET 4 AA213 LEU A 39 PRO A 42 1 N LEU A 39 O GLY B 116 SHEET 5 AA213 GLY B 133 GLY B 136 -1 O ILE B 134 N TRP A 40 SHEET 6 AA213 GLN A 26 ASP A 33 1 N VAL A 31 O LEU B 135 SHEET 7 AA213 GLN A 14 ILE A 21 -1 N ILE A 19 O PHE A 28 SHEET 8 AA213 ILE A 3 TYR A 10 -1 N LYS A 8 O TYR A 16 SHEET 9 AA213 GLY B 179 LEU B 183 -1 O LEU B 181 N GLU A 5 SHEET 10 AA213 ILE B 164 LEU B 169 -1 N SER B 166 O MET B 182 SHEET 11 AA213 TYR B 329 ASP B 334 -1 O PHE B 333 N PHE B 165 SHEET 12 AA213 ARG B 339 ALA B 345 -1 O GLY B 341 N VAL B 332 SHEET 13 AA213 TYR B 191 ASN B 199 -1 N LEU B 198 O VAL B 340 SHEET 1 AA3 4 THR B 220 LEU B 221 0 SHEET 2 AA3 4 GLN B 207 VAL B 215 -1 N VAL B 213 O LEU B 221 SHEET 3 AA3 4 ILE B 274 LEU B 278 -1 O THR B 275 N GLU B 214 SHEET 4 AA3 4 LYS B 281 LEU B 285 -1 O LEU B 285 N ILE B 274 SHEET 1 AA4 4 THR B 220 LEU B 221 0 SHEET 2 AA4 4 GLN B 207 VAL B 215 -1 N VAL B 213 O LEU B 221 SHEET 3 AA4 4 CYS B 226 VAL B 230 -1 O CYS B 226 N LEU B 210 SHEET 4 AA4 4 TRP B 319 LEU B 321 1 O LEU B 321 N ILE B 229 SHEET 1 AA5 2 MET B 237 GLY B 239 0 SHEET 2 AA5 2 PHE B 306 GLY B 308 1 O MET B 307 N MET B 237 SHEET 1 AA6 4 VAL B 254 PRO B 255 0 SHEET 2 AA6 4 TYR B 261 ILE B 263 -1 O MET B 262 N VAL B 254 SHEET 3 AA6 4 LYS B 299 SER B 304 -1 O SER B 304 N TYR B 261 SHEET 4 AA6 4 THR B 291 GLN B 296 -1 N LEU B 292 O LEU B 303 SSBOND 1 CYS A 27 CYS A 96 1555 1555 2.05 SSBOND 2 CYS A 46 CYS A 53 1555 1555 2.08 SSBOND 3 CYS B 222 CYS B 226 1555 1555 2.09 SSBOND 4 CYS B 265 CYS B 302 1555 1555 2.13 LINK ND2 ASN A 70 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 199 C1 NAG B 401 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CISPEP 1 THR A 23 PRO A 24 0 -6.08 CISPEP 2 VAL A 94 PRO A 95 0 -11.17 CISPEP 3 GLN B 176 PRO B 177 0 1.59 CISPEP 4 PRO B 313 PRO B 314 0 9.40 CISPEP 5 GLY B 316 PRO B 317 0 2.65 CRYST1 80.244 94.136 117.580 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008505 0.00000