HEADER CYTOSOLIC PROTEIN 24-DEC-18 6QBY TITLE CRYSTAL STRUCTURE OF VASH 2 IN COMPLEX WITH SVBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: VASOHIBIN-2,VASOHIBIN-LIKE PROTEIN; COMPND 5 EC: 3.4.17.17; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH2, VASHL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SVBP, CCDC23; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TUBULIN CARBOXYPEPTIDASE, CYSTEINE PROTEASE, COMPLEX, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.R.CHOI,V.OLIERIC,M.O.STEINMETZ,N.OLIERIC REVDAT 6 15-MAY-24 6QBY 1 REMARK REVDAT 5 17-JUL-19 6QBY 1 JRNL REVDAT 4 10-JUL-19 6QBY 1 JRNL REVDAT 3 03-JUL-19 6QBY 1 JRNL REVDAT 2 29-MAY-19 6QBY 1 REMARK REVDAT 1 24-APR-19 6QBY 0 JRNL AUTH N.WANG,C.BOSC,S.RYUL CHOI,B.BOULAN,L.PERIS,N.OLIERIC,H.BAO, JRNL AUTH 2 F.KRICHEN,L.CHEN,A.ANDRIEUX,V.OLIERIC,M.J.MOUTIN, JRNL AUTH 3 M.O.STEINMETZ,H.HUANG JRNL TITL STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY THE JRNL TITL 2 VASOHIBIN-SVBP ENZYME COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 571 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31235911 JRNL DOI 10.1038/S41594-019-0241-Y REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 103.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.7 REMARK 3 NUMBER OF REFLECTIONS : 30812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1434 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.37 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 159 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.36 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99810 REMARK 3 B22 (A**2) : 1.99810 REMARK 3 B33 (A**2) : -3.99620 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.303 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.222 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.221 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4555 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6151 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1596 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 658 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4555 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 580 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5325 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.93 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.85 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 2.4105 -66.4223 -27.6481 REMARK 3 T TENSOR REMARK 3 T11: -0.0716 T22: 0.0289 REMARK 3 T33: -0.1282 T12: -0.0640 REMARK 3 T13: 0.0182 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 0.8311 L22: 1.0634 REMARK 3 L33: 2.4485 L12: 0.4657 REMARK 3 L13: 0.3006 L23: 0.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.0529 S13: -0.0469 REMARK 3 S21: -0.0061 S22: 0.0802 S23: 0.0103 REMARK 3 S31: -0.1901 S32: 0.3598 S33: -0.0503 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 10.8431 -49.1223 -35.4026 REMARK 3 T TENSOR REMARK 3 T11: -0.0528 T22: 0.0796 REMARK 3 T33: -0.4961 T12: -0.4842 REMARK 3 T13: 0.0239 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.7240 L22: 1.2318 REMARK 3 L33: 5.3693 L12: 0.6695 REMARK 3 L13: 2.7215 L23: -1.5495 REMARK 3 S TENSOR REMARK 3 S11: -0.3753 S12: 1.0140 S13: -0.0038 REMARK 3 S21: -0.1039 S22: 0.1244 S23: 0.2366 REMARK 3 S31: -0.8502 S32: 0.6919 S33: 0.2508 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 17.7040 -31.3036 -3.5206 REMARK 3 T TENSOR REMARK 3 T11: -0.1456 T22: -0.2530 REMARK 3 T33: -0.2498 T12: 0.0388 REMARK 3 T13: 0.0138 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 1.6996 L22: 2.0039 REMARK 3 L33: 2.2055 L12: 0.2077 REMARK 3 L13: -0.6537 L23: -0.0458 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.1739 S13: 0.3918 REMARK 3 S21: -0.1377 S22: 0.2282 S23: 0.1960 REMARK 3 S31: -0.3952 S32: -0.2773 S33: -0.2196 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.7265 -18.6814 8.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: -0.2552 REMARK 3 T33: -0.0479 T12: 0.3164 REMARK 3 T13: 0.1292 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 3.6497 L22: -2.2002 REMARK 3 L33: 6.9777 L12: -1.5360 REMARK 3 L13: -1.5914 L23: 2.7769 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0539 S13: 0.6631 REMARK 3 S21: -0.1231 S22: 0.1467 S23: -0.2977 REMARK 3 S31: -0.3663 S32: -0.3900 S33: -0.1501 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30821 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 103.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL CYLINDER REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE 0.1M BIS-TRIS REMARK 280 PROPANE PH 6.5 20% PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.21200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.42400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.42400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 ASP A 44 REMARK 465 GLY A 45 REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 LYS A 293 REMARK 465 ILE A 294 REMARK 465 LEU A 295 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 LYS B 25 REMARK 465 PHE B 54 REMARK 465 ASP B 55 REMARK 465 GLU B 56 REMARK 465 PHE B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 MET B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 465 LYS B 67 REMARK 465 HIS B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 HIS B 73 REMARK 465 MET C 39 REMARK 465 GLU C 40 REMARK 465 GLU C 41 REMARK 465 ASP C 42 REMARK 465 LYS C 43 REMARK 465 ASP C 44 REMARK 465 GLY C 45 REMARK 465 GLY C 46 REMARK 465 VAL C 47 REMARK 465 LEU C 48 REMARK 465 ILE C 294 REMARK 465 LEU C 295 REMARK 465 MET D 0 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 PRO D 3 REMARK 465 PRO D 4 REMARK 465 ALA D 5 REMARK 465 ARG D 6 REMARK 465 LYS D 7 REMARK 465 GLU D 8 REMARK 465 LYS D 9 REMARK 465 THR D 10 REMARK 465 LYS D 11 REMARK 465 VAL D 12 REMARK 465 LYS D 13 REMARK 465 GLU D 14 REMARK 465 SER D 15 REMARK 465 VAL D 16 REMARK 465 SER D 17 REMARK 465 ARG D 18 REMARK 465 VAL D 19 REMARK 465 GLU D 20 REMARK 465 LYS D 21 REMARK 465 ALA D 22 REMARK 465 LYS D 23 REMARK 465 GLN D 24 REMARK 465 LYS D 25 REMARK 465 SER D 26 REMARK 465 ALA D 27 REMARK 465 GLN D 28 REMARK 465 LYS D 59 REMARK 465 GLN D 60 REMARK 465 MET D 61 REMARK 465 GLN D 62 REMARK 465 PRO D 63 REMARK 465 PRO D 64 REMARK 465 GLY D 65 REMARK 465 GLU D 66 REMARK 465 LYS D 67 REMARK 465 HIS D 68 REMARK 465 HIS D 69 REMARK 465 HIS D 70 REMARK 465 HIS D 71 REMARK 465 HIS D 72 REMARK 465 HIS D 73 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 68 CG SD CE REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 28 CG CD OE1 NE2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 MET C 68 CG SD CE REMARK 470 LYS C 72 CG CD CE NZ REMARK 470 VAL C 73 CG1 CG2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 LYS C 281 CG CD CE NZ REMARK 470 MET C 292 CG SD CE REMARK 470 GLN D 29 CG CD OE1 NE2 REMARK 470 GLU D 30 CG CD OE1 OE2 REMARK 470 LYS D 32 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 122 155.54 86.36 REMARK 500 LYS A 157 -168.47 -106.39 REMARK 500 MET A 216 -94.04 -143.68 REMARK 500 LYS A 265 58.01 -146.17 REMARK 500 GLN C 122 156.85 83.33 REMARK 500 MET C 216 -101.82 -138.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 6QBY A 40 295 UNP Q86V25 VASH2_HUMAN 40 295 DBREF 6QBY B 1 66 UNP Q8N300 SVBP_HUMAN 1 66 DBREF 6QBY C 40 295 UNP Q86V25 VASH2_HUMAN 40 295 DBREF 6QBY D 1 66 UNP Q8N300 SVBP_HUMAN 1 66 SEQADV 6QBY MET A 39 UNP Q86V25 INITIATING METHIONINE SEQADV 6QBY MET B 0 UNP Q8N300 INITIATING METHIONINE SEQADV 6QBY LYS B 67 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 68 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 69 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 70 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 71 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 72 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS B 73 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY MET C 39 UNP Q86V25 INITIATING METHIONINE SEQADV 6QBY MET D 0 UNP Q8N300 INITIATING METHIONINE SEQADV 6QBY LYS D 67 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 68 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 69 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 70 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 71 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 72 UNP Q8N300 EXPRESSION TAG SEQADV 6QBY HIS D 73 UNP Q8N300 EXPRESSION TAG SEQRES 1 A 257 MET GLU GLU ASP LYS ASP GLY GLY VAL LEU PHE HIS VAL SEQRES 2 A 257 ASN LYS SER GLY PHE PRO ILE ASP SER HIS THR TRP GLU SEQRES 3 A 257 ARG MET TRP MET HIS VAL ALA LYS VAL HIS PRO LYS GLY SEQRES 4 A 257 GLY GLU MET VAL GLY ALA ILE ARG ASN ALA ALA PHE LEU SEQRES 5 A 257 ALA LYS PRO SER ILE PRO GLN VAL PRO ASN TYR ARG LEU SEQRES 6 A 257 SER MET THR ILE PRO ASP TRP LEU GLN ALA ILE GLN ASN SEQRES 7 A 257 TYR MET LYS THR LEU GLN TYR ASN HIS THR GLY THR GLN SEQRES 8 A 257 PHE PHE GLU ILE ARG LYS MET ARG PRO LEU SER GLY LEU SEQRES 9 A 257 MET GLU THR ALA LYS GLU MET THR ARG GLU SER LEU PRO SEQRES 10 A 257 ILE LYS CYS LEU GLU ALA VAL ILE LEU GLY ILE TYR LEU SEQRES 11 A 257 THR ASN GLY GLN PRO SER ILE GLU ARG PHE PRO ILE SER SEQRES 12 A 257 PHE LYS THR TYR PHE SER GLY ASN TYR PHE HIS HIS VAL SEQRES 13 A 257 VAL LEU GLY ILE TYR CYS ASN GLY ARG TYR GLY SER LEU SEQRES 14 A 257 GLY MET SER ARG ARG ALA GLU LEU MET ASP LYS PRO LEU SEQRES 15 A 257 THR PHE ARG THR LEU SER ASP LEU ILE PHE ASP PHE GLU SEQRES 16 A 257 ASP SER TYR LYS LYS TYR LEU HIS THR VAL LYS LYS VAL SEQRES 17 A 257 LYS ILE GLY LEU TYR VAL PRO HIS GLU PRO HIS SER PHE SEQRES 18 A 257 GLN PRO ILE GLU TRP LYS GLN LEU VAL LEU ASN VAL SER SEQRES 19 A 257 LYS MET LEU ARG ALA ASP ILE ARG LYS GLU LEU GLU LYS SEQRES 20 A 257 TYR ALA ARG ASP MET ARG MET LYS ILE LEU SEQRES 1 B 74 MET MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL SEQRES 2 B 74 LYS GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SEQRES 3 B 74 SER ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU SEQRES 4 B 74 ILE TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN SEQRES 5 B 74 GLN GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO SEQRES 6 B 74 GLY GLU LYS HIS HIS HIS HIS HIS HIS SEQRES 1 C 257 MET GLU GLU ASP LYS ASP GLY GLY VAL LEU PHE HIS VAL SEQRES 2 C 257 ASN LYS SER GLY PHE PRO ILE ASP SER HIS THR TRP GLU SEQRES 3 C 257 ARG MET TRP MET HIS VAL ALA LYS VAL HIS PRO LYS GLY SEQRES 4 C 257 GLY GLU MET VAL GLY ALA ILE ARG ASN ALA ALA PHE LEU SEQRES 5 C 257 ALA LYS PRO SER ILE PRO GLN VAL PRO ASN TYR ARG LEU SEQRES 6 C 257 SER MET THR ILE PRO ASP TRP LEU GLN ALA ILE GLN ASN SEQRES 7 C 257 TYR MET LYS THR LEU GLN TYR ASN HIS THR GLY THR GLN SEQRES 8 C 257 PHE PHE GLU ILE ARG LYS MET ARG PRO LEU SER GLY LEU SEQRES 9 C 257 MET GLU THR ALA LYS GLU MET THR ARG GLU SER LEU PRO SEQRES 10 C 257 ILE LYS CYS LEU GLU ALA VAL ILE LEU GLY ILE TYR LEU SEQRES 11 C 257 THR ASN GLY GLN PRO SER ILE GLU ARG PHE PRO ILE SER SEQRES 12 C 257 PHE LYS THR TYR PHE SER GLY ASN TYR PHE HIS HIS VAL SEQRES 13 C 257 VAL LEU GLY ILE TYR CYS ASN GLY ARG TYR GLY SER LEU SEQRES 14 C 257 GLY MET SER ARG ARG ALA GLU LEU MET ASP LYS PRO LEU SEQRES 15 C 257 THR PHE ARG THR LEU SER ASP LEU ILE PHE ASP PHE GLU SEQRES 16 C 257 ASP SER TYR LYS LYS TYR LEU HIS THR VAL LYS LYS VAL SEQRES 17 C 257 LYS ILE GLY LEU TYR VAL PRO HIS GLU PRO HIS SER PHE SEQRES 18 C 257 GLN PRO ILE GLU TRP LYS GLN LEU VAL LEU ASN VAL SER SEQRES 19 C 257 LYS MET LEU ARG ALA ASP ILE ARG LYS GLU LEU GLU LYS SEQRES 20 C 257 TYR ALA ARG ASP MET ARG MET LYS ILE LEU SEQRES 1 D 74 MET MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL SEQRES 2 D 74 LYS GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SEQRES 3 D 74 SER ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU SEQRES 4 D 74 ILE TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN SEQRES 5 D 74 GLN GLN PHE ASP GLU PHE CYS LYS GLN MET GLN PRO PRO SEQRES 6 D 74 GLY GLU LYS HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *265(H2 O) HELIX 1 AA1 ASP A 59 HIS A 74 1 16 HELIX 2 AA2 LYS A 76 ASN A 86 1 11 HELIX 3 AA3 THR A 106 GLN A 122 1 17 HELIX 4 AA4 PRO A 138 SER A 153 1 16 HELIX 5 AA5 LYS A 157 ASN A 170 1 14 HELIX 6 AA6 THR A 224 LYS A 238 1 15 HELIX 7 AA7 LEU A 275 MET A 292 1 18 HELIX 8 AA8 ALA B 27 GLN B 53 1 27 HELIX 9 AA9 ASP C 59 HIS C 74 1 16 HELIX 10 AB1 LYS C 76 ASN C 86 1 11 HELIX 11 AB2 THR C 106 GLN C 122 1 17 HELIX 12 AB3 PRO C 138 SER C 153 1 16 HELIX 13 AB4 LYS C 157 ASN C 170 1 14 HELIX 14 AB5 THR C 224 LYS C 238 1 15 HELIX 15 AB6 LEU C 275 LYS C 293 1 19 HELIX 16 AB7 GLU D 30 PHE D 57 1 28 SHEET 1 AA1 2 HIS A 50 VAL A 51 0 SHEET 2 AA1 2 THR A 128 GLN A 129 1 O GLN A 129 N HIS A 50 SHEET 1 AA2 6 LYS A 218 PHE A 222 0 SHEET 2 AA2 6 ARG A 203 LEU A 207 -1 N TYR A 204 O PHE A 222 SHEET 3 AA2 6 ASN A 189 CYS A 200 -1 N LEU A 196 O LEU A 207 SHEET 4 AA2 6 GLU A 176 PHE A 186 -1 N PHE A 182 O HIS A 193 SHEET 5 AA2 6 THR A 242 ILE A 248 -1 O LYS A 247 N SER A 181 SHEET 6 AA2 6 LEU A 267 LEU A 269 -1 O LEU A 267 N ILE A 248 SHEET 1 AA3 2 HIS C 50 VAL C 51 0 SHEET 2 AA3 2 THR C 128 GLN C 129 1 O GLN C 129 N HIS C 50 SHEET 1 AA4 6 LYS C 218 PHE C 222 0 SHEET 2 AA4 6 ARG C 203 LEU C 207 -1 N TYR C 204 O PHE C 222 SHEET 3 AA4 6 ASN C 189 CYS C 200 -1 N LEU C 196 O LEU C 207 SHEET 4 AA4 6 GLU C 176 PHE C 186 -1 N GLU C 176 O TYR C 199 SHEET 5 AA4 6 THR C 242 ILE C 248 -1 O LYS C 247 N SER C 181 SHEET 6 AA4 6 LEU C 267 LEU C 269 -1 O LEU C 267 N ILE C 248 CISPEP 1 PHE A 56 PRO A 57 0 0.35 CISPEP 2 PHE C 56 PRO C 57 0 5.89 CRYST1 119.887 119.887 102.636 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008341 0.004816 0.000000 0.00000 SCALE2 0.000000 0.009632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009743 0.00000