HEADER RIBOSOMAL PROTEIN 25-DEC-18 6QBZ TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE STAPHYLOCOCCUS TITLE 2 AUREUS HIBERNATION PROMOTING FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME HIBERNATION PROMOTING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: HPF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: HPF, RAIA, BN1321_170086, BTN44_08780, C0J46_03720, SOURCE 5 C7Q89_05535, CSC83_13900, CSC87_08515, CV021_09125, EP54_02760, SOURCE 6 EQ90_03750, ERS072840_01629, HMPREF3211_01097, NCTC10654_00858, SOURCE 7 NCTC11940_00726, NCTC13131_00825, NCTC13196_00432, NCTC13812_00784, SOURCE 8 NCTC6133_00902, NCTC7878_03405, NCTC9944_00832, RK64_04495, SOURCE 9 SAMEA1466939_00154, SAMEA1469870_00863, SAMEA1531701_00565, SOURCE 10 SAMEA1708664_00330, SAMEA1708674_00592; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PGS21A KEYWDS HIBERNATION PROMOTING FACTOR, STAPHYLOCOCCUS AUREUS, 100S RIBOSOME, KEYWDS 2 RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.S.USACHEV,S.Z.VALIDOV,I.S.KHUSAINOV,V.V.KLOCHKOV,A.V.AGANOV, AUTHOR 2 M.M.YUSUPOV REVDAT 3 15-MAY-24 6QBZ 1 REMARK REVDAT 2 26-JUN-19 6QBZ 1 JRNL REVDAT 1 19-JUN-19 6QBZ 0 JRNL AUTH K.S.USACHEV,S.Z.VALIDOV,I.S.KHUSAINOV,A.A.VARFOLOMEEV, JRNL AUTH 2 V.V.KLOCHKOV,A.V.AGANOV,M.M.YUSUPOV JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF THE JRNL TITL 2 STAPHYLOCOCCUS AUREUS HIBERNATION PROMOTING FACTOR. JRNL REF J.BIOMOL.NMR V. 73 223 2019 JRNL REFN ISSN 0925-2738 JRNL PMID 31165320 JRNL DOI 10.1007/S10858-019-00254-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS, ARIA REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QBZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1200013633. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 15N] N-TERMINAL REMARK 210 DOMAIN OF HIBERNATION PROMOTING REMARK 210 FACTOR FROM STAPHYLOCOCCUS REMARK 210 AUREUS, 90% H2O/10% D2O; 0.62 MM REMARK 210 [U-99% 13C; U-99% 15N] N- REMARK 210 TERMINAL DOMAIN OF HIBERNATION REMARK 210 PROMOTING FACTOR FROM REMARK 210 STAPHYLOCOCCUS AUREUS, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 10 -161.26 -128.49 REMARK 500 1 SER A 48 137.19 178.55 REMARK 500 1 PHE A 109 62.39 67.95 REMARK 500 2 GLU A 5 79.14 -116.06 REMARK 500 2 ASN A 10 -58.61 -157.03 REMARK 500 2 LEU A 11 -69.07 -134.82 REMARK 500 2 THR A 12 121.62 -172.11 REMARK 500 2 LYS A 24 -71.11 -55.58 REMARK 500 2 SER A 48 162.85 177.73 REMARK 500 2 THR A 52 88.54 -150.88 REMARK 500 2 ARG A 70 70.19 -101.38 REMARK 500 2 GLN A 106 36.98 -93.92 REMARK 500 3 THR A 46 106.14 -162.42 REMARK 500 3 SER A 48 170.24 177.08 REMARK 500 3 GLU A 68 75.98 -157.24 REMARK 500 3 ARG A 70 59.29 -92.80 REMARK 500 4 ASN A 10 -90.19 -122.36 REMARK 500 4 LEU A 11 -90.72 -137.18 REMARK 500 4 ALA A 38 118.63 -167.21 REMARK 500 4 SER A 48 150.63 179.26 REMARK 500 4 THR A 52 88.75 -155.22 REMARK 500 4 ASP A 102 106.54 -59.06 REMARK 500 5 ALA A 38 119.34 -160.73 REMARK 500 5 TYR A 47 67.96 -157.50 REMARK 500 5 ARG A 101 -68.80 -96.55 REMARK 500 5 GLU A 107 41.77 -93.57 REMARK 500 6 LEU A 11 -56.04 70.07 REMARK 500 6 THR A 12 32.35 -83.11 REMARK 500 6 TYR A 47 65.35 -118.10 REMARK 500 6 ASN A 71 -163.48 -113.75 REMARK 500 6 GLU A 107 89.49 -154.59 REMARK 500 7 ALA A 38 113.95 -160.15 REMARK 500 7 SER A 48 -177.26 179.70 REMARK 500 7 ARG A 98 -72.12 -42.92 REMARK 500 7 LYS A 99 -76.94 -94.79 REMARK 500 7 SER A 100 -82.43 -117.83 REMARK 500 8 ASN A 10 -50.92 70.82 REMARK 500 9 LEU A 11 -40.02 73.17 REMARK 500 9 TYR A 47 66.01 -104.73 REMARK 500 9 SER A 48 -176.21 -175.35 REMARK 500 9 PRO A 59 99.14 -69.13 REMARK 500 9 ASN A 71 -160.79 -122.38 REMARK 500 10 GLU A 5 79.10 -116.37 REMARK 500 10 ASN A 33 -59.95 -123.68 REMARK 500 10 TYR A 47 65.82 -116.53 REMARK 500 10 SER A 48 161.09 179.72 REMARK 500 10 ASN A 71 67.36 28.53 REMARK 500 10 ASP A 72 -84.50 -144.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27085 RELATED DB: BMRB DBREF 6QBZ A 1 110 UNP W8USK0 W8USK0_STAAU 1 110 SEQRES 1 A 110 MET ILE ARG PHE GLU ILE HIS GLY ASP ASN LEU THR ILE SEQRES 2 A 110 THR ASP ALA ILE ARG ASN TYR ILE GLU GLU LYS ILE GLY SEQRES 3 A 110 LYS LEU GLU ARG TYR PHE ASN ASP VAL PRO ASN ALA VAL SEQRES 4 A 110 ALA HIS VAL LYS VAL LYS THR TYR SER ASN SER ALA THR SEQRES 5 A 110 LYS ILE GLU VAL THR ILE PRO LEU LYS ASN VAL THR LEU SEQRES 6 A 110 ARG ALA GLU GLU ARG ASN ASP ASP LEU TYR ALA GLY ILE SEQRES 7 A 110 ASP LEU ILE ASN ASN LYS LEU GLU ARG GLN VAL ARG LYS SEQRES 8 A 110 TYR LYS THR ARG ILE ASN ARG LYS SER ARG ASP ARG GLY SEQRES 9 A 110 ASP GLN GLU VAL PHE VAL HELIX 1 AA1 THR A 14 ARG A 30 1 17 HELIX 2 AA2 ASP A 73 LYS A 99 1 27 SHEET 1 AA1 4 GLU A 5 ILE A 6 0 SHEET 2 AA1 4 HIS A 41 LYS A 45 1 O VAL A 42 N GLU A 5 SHEET 3 AA1 4 LYS A 53 PRO A 59 -1 O THR A 57 N HIS A 41 SHEET 4 AA1 4 THR A 64 ARG A 70 -1 O LEU A 65 N ILE A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1