HEADER SUGAR BINDING PROTEIN 01-JAN-19 6QDI TITLE ANTI-SIGMA FACTOR DOMAIN-CONTAINING PROTEIN FROM CLOSTRIDIUM TITLE 2 CLARIFLAVUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA14 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM CLARIFLAVUM; SOURCE 3 ORGANISM_TAXID: 288965; SOURCE 4 GENE: CLOCL_2747; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOMASS SENSING, CELLULOSOME, SIGMA FACTORS, ANTI-SIGMA FACTORS, KEYWDS 2 RSGI, SIGI, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.VORONOV,E.A.BAYER,O.LIVNAH REVDAT 2 16-OCT-19 6QDI 1 JRNL REVDAT 1 12-JUN-19 6QDI 0 JRNL AUTH I.R.GRINBERG,O.YANIV,L.O.DE ORA,I.MUNOZ-GUTIERREZ,A.HERSHKO, JRNL AUTH 2 O.LIVNAH,E.A.BAYER,I.BOROVOK,F.FROLOW,R.LAMED, JRNL AUTH 3 M.VORONOV-GOLDMAN JRNL TITL DISTINCTIVE LIGAND-BINDING SPECIFICITIES OF TANDEM PA14 JRNL TITL 2 BIOMASS-SENSORY ELEMENTS FROM CLOSTRIDIUM THERMOCELLUM AND JRNL TITL 3 CLOSTRIDIUM CLARIFLAVUM. JRNL REF PROTEINS V. 87 917 2019 JRNL REFN ESSN 1097-0134 JRNL PMID 31162722 JRNL DOI 10.1002/PROT.25753 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 106278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 376 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.032 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.016 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2509 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2322 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3412 ; 1.662 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5351 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 7.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;33.441 ;23.984 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;11.014 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2852 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1190 ; 0.914 ; 0.944 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1189 ; 0.912 ; 0.944 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1488 ; 1.184 ; 1.426 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1489 ; 1.184 ; 1.426 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1319 ; 1.462 ; 1.146 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1319 ; 1.462 ; 1.146 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1917 ; 1.777 ; 1.648 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3015 ; 2.398 ;12.623 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2883 ; 1.994 ;11.615 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4830 ; 3.195 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 278 ;17.021 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4908 ; 5.616 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111927 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 51.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PH 6.5, 12% PEG 20K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 110 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 216 NZ REMARK 470 ARG A 293 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 308 O HOH A 501 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 118 CD GLU A 118 OE1 -0.081 REMARK 500 GLU A 161 CD GLU A 161 OE2 -0.105 REMARK 500 GLU A 278 CD GLU A 278 OE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 70.85 68.77 REMARK 500 ASP A 46 85.84 -157.05 REMARK 500 ASN A 88 -96.55 -106.78 REMARK 500 THR A 133 157.25 77.52 REMARK 500 LEU A 288 -141.32 57.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 283 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 29 O REMARK 620 2 ASP A 61 OD1 150.0 REMARK 620 3 ASP A 61 OD2 151.0 51.3 REMARK 620 4 SER A 63 O 76.5 86.7 132.5 REMARK 620 5 SER A 63 OG 121.8 73.8 75.9 71.0 REMARK 620 6 HOH A 654 O 71.6 137.7 95.7 105.6 72.5 REMARK 620 7 HOH A 792 O 77.8 110.3 73.9 151.5 134.7 77.6 REMARK 620 8 HOH A 656 O 78.6 74.3 103.7 80.7 138.1 146.8 82.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 87 OD1 REMARK 620 2 ASN A 88 OD1 78.4 REMARK 620 3 ASN A 131 OD1 110.3 74.7 REMARK 620 4 THR A 133 O 167.6 105.9 82.1 REMARK 620 5 ASN A 135 O 79.4 133.9 76.0 104.3 REMARK 620 6 EDO A 402 O1 78.9 136.1 149.0 90.4 76.8 REMARK 620 7 EDO A 402 O2 91.2 75.6 138.5 79.0 144.6 67.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 O REMARK 620 2 ASP A 214 OD1 150.0 REMARK 620 3 ASP A 214 OD2 154.3 52.1 REMARK 620 4 LYS A 216 O 80.9 80.0 124.1 REMARK 620 5 HOH A 825 O 90.3 111.6 86.0 87.3 REMARK 620 6 HOH A 619 O 81.0 76.6 101.8 91.4 171.3 REMARK 620 7 HOH A 791 O 77.6 121.4 76.9 158.1 88.6 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD1 REMARK 620 2 ASP A 241 OD2 90.1 REMARK 620 3 ASN A 285 OD1 123.4 74.4 REMARK 620 4 GLY A 287 O 157.9 105.1 76.9 REMARK 620 5 ALA A 289 O 79.3 135.1 75.7 99.9 REMARK 620 6 EDO A 401 O1 88.1 77.9 137.3 79.7 143.9 REMARK 620 7 EDO A 401 O2 73.3 142.2 143.0 85.1 75.9 68.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 406 DBREF 6QDI A 22 314 UNP G8M2Z2 G8M2Z2_CLOCD 353 645 SEQADV 6QDI HIS A 20 UNP G8M2Z2 EXPRESSION TAG SEQADV 6QDI MET A 21 UNP G8M2Z2 EXPRESSION TAG SEQRES 1 A 295 HIS MET GLY LEU ARG GLY ASP TYR PHE ASP ASN ILE ASP SEQRES 2 A 295 LEU THR ASN PHE LYS LEU THR ARG VAL ASP LYS THR ILE SEQRES 3 A 295 ASP PHE PHE TRP GLY VAL ASN SER PRO ALA LYS GLU ILE SEQRES 4 A 295 ARG ASN ASP GLU SER TYR SER VAL ARG TRP THR GLY LYS SEQRES 5 A 295 ILE ARG PRO LEU TYR SER GLU GLU TYR THR PHE TYR ILE SEQRES 6 A 295 SER ARG ASP ASN GLY VAL ARG LEU TRP ILE ASP ASN LYS SEQRES 7 A 295 LEU ILE ILE ASP LYS TRP ASP ASN LEU VAL GLY LEU ASP SEQRES 8 A 295 GLU MET GLY LYS ILE TYR LEU GLU ALA GLY LYS LEU TYR SEQRES 9 A 295 ASP ILE LYS LEU GLU TYR PHE ASN ASN THR GLY ASN GLY SEQRES 10 A 295 PHE VAL LYS LEU GLU TRP SER SER ALA SER THR VAL ARG SEQRES 11 A 295 SER ILE VAL PRO THR GLU CYS LEU TYR PRO ALA GLU PRO SEQRES 12 A 295 LYS HIS TYR GLY SER SER ILE PRO GLY LYS GLY ILE GLY SEQRES 13 A 295 LEU PHE TYR GLU TYR PHE ASP GLU ASP ASN LEU THR ASN SEQRES 14 A 295 PRO LYS GLU LYS GLY ILE ASP SER VAL ILE ASP PHE ASN SEQRES 15 A 295 TRP GLY VAL GLY SER PRO SER LYS SER ILE ASN GLN ASP SEQRES 16 A 295 GLN LYS PHE SER VAL ARG TRP THR GLY PHE ILE GLN VAL SEQRES 17 A 295 PRO TYR ASP GLY ASP TYR VAL PHE TYR VAL SER TYR ASP SEQRES 18 A 295 ASP GLY ALA SER LEU TRP ILE ASP ARG GLN LEU LEU ILE SEQRES 19 A 295 ASP LYS TRP THR ALA SER GLU ILE ASN THR ALA LYS THR SEQRES 20 A 295 GLU ALA ILE SER LEU LYS ALA GLY GLN ARG VAL GLU VAL SEQRES 21 A 295 MET LEU LEU TYR ARG ASN THR GLY LEU ALA GLY SER ILE SEQRES 22 A 295 ARG LEU GLU TRP GLU GLY PRO GLY ILE GLU ARG SER VAL SEQRES 23 A 295 VAL PRO GLN SER CYS LEU TYR PRO ARG HET EDO A 401 4 HET EDO A 402 4 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET CA A 406 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 CA 4(CA 2+) FORMUL 8 HOH *421(H2 O) HELIX 1 AA1 PRO A 153 GLU A 155 5 3 HELIX 2 AA2 PRO A 307 SER A 309 5 3 SHEET 1 A 6 LYS A 97 LYS A 102 0 SHEET 2 A 6 GLY A 89 ILE A 94 -1 SHEET 3 A 6 LEU A 122 ASN A 132 -1 SHEET 4 A 6 SER A 63 ARG A 73 -1 SHEET 5 A 6 LEU A 23 PHE A 28 -1 SHEET 6 A 6 PHE A 36 ASP A 42 -1 SHEET 1 B 2 GLY A 70 ILE A 72 0 SHEET 2 B 2 LEU A 157 PRO A 159 -1 SHEET 1 C 4 GLY A 108 LEU A 117 0 SHEET 2 C 4 GLU A 78 ASP A 87 -1 SHEET 3 C 4 GLY A 136 SER A 143 -1 SHEET 4 C 4 ASP A 46 GLY A 50 -1 SHEET 1 D 6 GLN A 250 LYS A 255 0 SHEET 2 D 6 GLY A 242 ILE A 247 -1 SHEET 3 D 6 ARG A 276 ASN A 285 -1 SHEET 4 D 6 PHE A 217 GLN A 226 -1 SHEET 5 D 6 LEU A 176 PHE A 181 -1 SHEET 6 D 6 PRO A 189 ASP A 195 -1 SHEET 1 E 2 GLY A 231 TYR A 233 0 SHEET 2 E 2 ILE A 269 LEU A 271 -1 SHEET 1 F 4 ASN A 262 LYS A 265 0 SHEET 2 F 4 VAL A 234 ASP A 240 -1 SHEET 3 F 4 GLY A 290 GLU A 297 -1 SHEET 4 F 4 ASP A 199 GLY A 203 -1 LINK O ASP A 29 CA CA A 406 1555 1555 2.40 LINK OD1 ASP A 61 CA CA A 406 1555 1555 2.53 LINK OD2 ASP A 61 CA CA A 406 1555 1555 2.46 LINK O SER A 63 CA CA A 406 1555 1555 2.34 LINK OG SER A 63 CA CA A 406 1555 1555 2.53 LINK OD1 ASP A 87 CA CA A 403 1555 1555 2.32 LINK OD1 ASN A 88 CA CA A 403 1555 1555 2.45 LINK OD1 ASN A 131 CA CA A 403 1555 1555 2.35 LINK O THR A 133 CA CA A 403 1555 1555 2.31 LINK O ASN A 135 CA CA A 403 1555 1555 2.37 LINK O ASP A 182 CA CA A 405 1555 1555 2.33 LINK OD1 ASP A 214 CA CA A 405 1555 1555 2.52 LINK OD2 ASP A 214 CA CA A 405 1555 1555 2.43 LINK O LYS A 216 CA CA A 405 1555 1555 2.32 LINK OD1 ASP A 240 CA CA A 404 1555 1555 2.37 LINK OD2 ASP A 241 CA CA A 404 1555 1555 2.39 LINK OD1 ASN A 285 CA CA A 404 1555 1555 2.43 LINK O GLY A 287 CA CA A 404 1555 1555 2.31 LINK O ALA A 289 CA CA A 404 1555 1555 2.31 LINK O1 EDO A 401 CA CA A 404 1555 1555 2.46 LINK O2 EDO A 401 CA CA A 404 1555 1555 2.56 LINK O1 EDO A 402 CA CA A 403 1555 1555 2.48 LINK O2 EDO A 402 CA CA A 403 1555 1555 2.46 LINK CA CA A 405 O HOH A 825 1555 1555 2.35 LINK CA CA A 405 O HOH A 619 1555 1555 2.36 LINK CA CA A 405 O HOH A 791 1555 1555 2.41 LINK CA CA A 406 O HOH A 654 1555 1555 2.46 LINK CA CA A 406 O HOH A 792 1555 1555 2.48 LINK CA CA A 406 O HOH A 656 1555 1555 2.38 CISPEP 1 ASP A 87 ASN A 88 0 7.96 CISPEP 2 ASP A 240 ASP A 241 0 18.30 SITE 1 AC1 7 ASP A 240 ASP A 241 GLY A 287 LEU A 288 SITE 2 AC1 7 ALA A 289 CA A 404 HOH A 621 SITE 1 AC2 7 ASP A 87 ASN A 88 THR A 133 GLY A 134 SITE 2 AC2 7 ASN A 135 CA A 403 HOH A 604 SITE 1 AC3 6 ASP A 87 ASN A 88 ASN A 131 THR A 133 SITE 2 AC3 6 ASN A 135 EDO A 402 SITE 1 AC4 6 ASP A 240 ASP A 241 ASN A 285 GLY A 287 SITE 2 AC4 6 ALA A 289 EDO A 401 SITE 1 AC5 6 ASP A 182 ASP A 214 LYS A 216 HOH A 619 SITE 2 AC5 6 HOH A 791 HOH A 825 SITE 1 AC6 6 ASP A 29 ASP A 61 SER A 63 HOH A 654 SITE 2 AC6 6 HOH A 656 HOH A 792 CRYST1 104.600 41.430 73.310 90.00 100.35 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009560 0.000000 0.001745 0.00000 SCALE2 0.000000 0.024137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013866 0.00000