HEADER CHAPERONE 02-JAN-19 6QDU TITLE CRYSTAL STRUCTURE OF 14-3-3SIGMA IN COMPLEX WITH A RAPGEF2 PT740 TITLE 2 PHOSPHOPEPTIDE INHIBITED BY SEMI-SYNTHETIC FUSICOCCANE FC-NCPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN SIGMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL MARKER PROTEIN 1,STRATIFIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SFN, HME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NEURON REGENERATION, PPI, PHOSPHORYLATION, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ANDREI,A.KAPLAN,A.E.FOURNIER,C.OTTMAN REVDAT 4 24-JAN-24 6QDU 1 REMARK REVDAT 3 11-AUG-21 6QDU 1 JRNL REVDAT 2 10-FEB-21 6QDU 1 JRNL LINK REVDAT 1 29-JAN-20 6QDU 0 JRNL AUTH A.KAPLAN,S.A.ANDREI,A.VAN REGTEREN ALTENA,T.SIMAS, JRNL AUTH 2 S.L.BANERJEE,N.KATO,N.BISSON,Y.HIGUCHI,C.OTTMANN, JRNL AUTH 3 A.E.FOURNIER JRNL TITL POLYPHARMACOLOGICAL PERTURBATION OF THE 14-3-3 ADAPTOR JRNL TITL 2 PROTEIN INTERACTOME STIMULATES NEURITE OUTGROWTH. JRNL REF CELL CHEM BIOL V. 27 657 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32220335 JRNL DOI 10.1016/J.CHEMBIOL.2020.02.010 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 33422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8848 - 3.7339 0.99 3024 161 0.1720 0.1953 REMARK 3 2 3.7339 - 2.9646 1.00 2938 168 0.1521 0.1736 REMARK 3 3 2.9646 - 2.5901 1.00 2895 159 0.1627 0.1840 REMARK 3 4 2.5901 - 2.3534 1.00 2897 161 0.1588 0.2147 REMARK 3 5 2.3534 - 2.1848 1.00 2875 152 0.1522 0.1866 REMARK 3 6 2.1848 - 2.0560 1.00 2881 162 0.1561 0.1709 REMARK 3 7 2.0560 - 1.9530 1.00 2856 169 0.1783 0.2074 REMARK 3 8 1.9530 - 1.8680 0.99 2869 143 0.2010 0.1967 REMARK 3 9 1.8680 - 1.7961 0.99 2832 126 0.2196 0.2233 REMARK 3 10 1.7961 - 1.7342 0.95 2711 132 0.2461 0.2586 REMARK 3 11 1.7342 - 1.6799 0.72 2064 100 0.2802 0.2881 REMARK 3 12 1.6799 - 1.6319 0.31 911 36 0.3231 0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7206 13.8398 -8.2647 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0619 REMARK 3 T33: 0.0558 T12: 0.0106 REMARK 3 T13: 0.0096 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.8652 L22: 3.0222 REMARK 3 L33: 3.0351 L12: 0.3943 REMARK 3 L13: -0.4944 L23: 0.1450 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: -0.0565 S13: 0.0211 REMARK 3 S21: -0.0559 S22: -0.0114 S23: -0.0422 REMARK 3 S31: 0.0437 S32: 0.0629 S33: 0.0189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8717 7.4865 8.8032 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0923 REMARK 3 T33: 0.0996 T12: 0.0330 REMARK 3 T13: 0.0365 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.0651 L22: 4.8991 REMARK 3 L33: 4.2113 L12: 0.2945 REMARK 3 L13: -0.3927 L23: -3.7349 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.0983 S13: -0.0735 REMARK 3 S21: 0.3449 S22: 0.2178 S23: 0.2667 REMARK 3 S31: -0.1194 S32: -0.2865 S33: -0.1474 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2467 12.5202 11.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0997 REMARK 3 T33: 0.0843 T12: 0.0275 REMARK 3 T13: -0.0089 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.2253 L22: 4.4037 REMARK 3 L33: 1.8769 L12: -1.2489 REMARK 3 L13: 0.4461 L23: -1.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: -0.0288 S13: 0.0918 REMARK 3 S21: 0.2408 S22: 0.0394 S23: -0.1684 REMARK 3 S31: -0.1069 S32: 0.0006 S33: 0.0325 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9296 27.1186 15.9693 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.1251 REMARK 3 T33: 0.1437 T12: 0.0401 REMARK 3 T13: -0.0158 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 3.0368 L22: 4.0176 REMARK 3 L33: 5.7891 L12: -1.0145 REMARK 3 L13: 1.7118 L23: -2.4031 REMARK 3 S TENSOR REMARK 3 S11: -0.2341 S12: -0.2687 S13: 0.3338 REMARK 3 S21: 0.6213 S22: 0.2035 S23: -0.3447 REMARK 3 S31: -0.3751 S32: -0.1438 S33: 0.0045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0709 23.4221 11.1822 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.1588 REMARK 3 T33: 0.1444 T12: 0.0130 REMARK 3 T13: 0.0154 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.8510 L22: 2.6695 REMARK 3 L33: 3.8275 L12: -0.8544 REMARK 3 L13: 0.2956 L23: -0.0597 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1080 S13: 0.0212 REMARK 3 S21: -0.1161 S22: -0.0667 S23: 0.2189 REMARK 3 S31: 0.1533 S32: -0.5130 S33: 0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1200013708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4JC3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.19 M CACL2, 5% V/V GLYCEROL, 28 % REMARK 280 PEG 400, 0.095 M HEPES, PH 7.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.40100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.40100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.42700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.86850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.42700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.86850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.40100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.42700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.86850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.40100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.42700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.86850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 725 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 GLY A 137 REMARK 465 ASP A 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 60 O HOH A 417 1.56 REMARK 500 HG SER A 0 O HOH A 404 1.60 REMARK 500 O HOH A 412 O HOH A 453 1.93 REMARK 500 O HOH A 404 O HOH A 606 1.95 REMARK 500 O HOH A 413 O HOH A 420 1.96 REMARK 500 O HOH A 464 O HOH A 672 1.97 REMARK 500 OE1 GLU A 34 O HOH A 401 1.99 REMARK 500 O HOH A 470 O HOH A 657 2.02 REMARK 500 O HOH A 541 O HOH A 576 2.03 REMARK 500 O HOH A 453 O HOH A 621 2.04 REMARK 500 O HOH A 442 O HOH A 688 2.05 REMARK 500 O HOH A 413 O HOH A 429 2.07 REMARK 500 O HOH A 672 O HOH A 691 2.09 REMARK 500 O HOH A 696 O HOH A 715 2.09 REMARK 500 O HOH A 502 O HOH A 650 2.10 REMARK 500 O HOH A 420 O HOH A 644 2.10 REMARK 500 O HOH A 590 O HOH A 605 2.11 REMARK 500 O HOH A 432 O HOH A 577 2.12 REMARK 500 OE2 GLU A 20 O HOH A 402 2.14 REMARK 500 O HOH A 409 O HOH A 594 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 421 O HOH A 625 6554 2.01 REMARK 500 O HOH A 576 O HOH A 576 3654 2.08 REMARK 500 O HOH A 409 O HOH A 524 6554 2.12 REMARK 500 O HOH A 403 O HOH A 609 7545 2.17 REMARK 500 O HOH A 699 O HOH A 722 4555 2.18 REMARK 500 O HOH A 401 O HOH A 625 6554 2.19 REMARK 500 O HOH A 547 O HOH A 619 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 78.73 -106.39 REMARK 500 ARG A 18 78.73 -105.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 106 LEU A 107 -149.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 723 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 724 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 726 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 2 OE1 REMARK 620 2 GLU A 2 OE1 0.0 REMARK 620 3 HOH A 481 O 77.8 77.8 REMARK 620 4 HOH A 481 O 78.5 78.5 146.7 REMARK 620 5 HOH A 540 O 70.9 70.9 124.9 67.0 REMARK 620 6 HOH A 540 O 141.6 141.6 67.0 125.0 142.9 REMARK 620 7 HOH A 668 O 91.7 91.7 86.6 117.1 51.4 100.6 REMARK 620 8 HOH A 668 O 164.8 164.8 117.1 86.6 100.6 51.4 92.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 8 OE1 REMARK 620 2 GLN A 8 OE1 48.5 REMARK 620 3 LYS A 77 O 29.8 61.1 REMARK 620 4 GLU A 80 OE1 31.8 61.9 2.1 REMARK 620 5 GLU A 80 OE2 34.2 63.9 4.4 2.5 REMARK 620 6 HOH A 406 O 34.2 66.1 5.3 4.3 2.8 REMARK 620 7 HOH A 476 O 34.5 63.7 4.8 2.7 0.7 3.4 REMARK 620 8 HOH A 607 O 30.6 64.1 3.3 4.0 4.7 3.6 5.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HY5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 DBREF 6QDU A 1 231 UNP P31947 1433S_HUMAN 1 231 SEQADV 6QDU GLY A -4 UNP P31947 EXPRESSION TAG SEQADV 6QDU ALA A -3 UNP P31947 EXPRESSION TAG SEQADV 6QDU MET A -2 UNP P31947 EXPRESSION TAG SEQADV 6QDU GLY A -1 UNP P31947 EXPRESSION TAG SEQADV 6QDU SER A 0 UNP P31947 EXPRESSION TAG SEQRES 1 A 236 GLY ALA MET GLY SER MET GLU ARG ALA SER LEU ILE GLN SEQRES 2 A 236 LYS ALA LYS LEU ALA GLU GLN ALA GLU ARG TYR GLU ASP SEQRES 3 A 236 MET ALA ALA PHE MET LYS GLY ALA VAL GLU LYS GLY GLU SEQRES 4 A 236 GLU LEU SER CYS GLU GLU ARG ASN LEU LEU SER VAL ALA SEQRES 5 A 236 TYR LYS ASN VAL VAL GLY GLY GLN ARG ALA ALA TRP ARG SEQRES 6 A 236 VAL LEU SER SER ILE GLU GLN LYS SER ASN GLU GLU GLY SEQRES 7 A 236 SER GLU GLU LYS GLY PRO GLU VAL ARG GLU TYR ARG GLU SEQRES 8 A 236 LYS VAL GLU THR GLU LEU GLN GLY VAL CYS ASP THR VAL SEQRES 9 A 236 LEU GLY LEU LEU ASP SER HIS LEU ILE LYS GLU ALA GLY SEQRES 10 A 236 ASP ALA GLU SER ARG VAL PHE TYR LEU LYS MET LYS GLY SEQRES 11 A 236 ASP TYR TYR ARG TYR LEU ALA GLU VAL ALA THR GLY ASP SEQRES 12 A 236 ASP LYS LYS ARG ILE ILE ASP SER ALA ARG SER ALA TYR SEQRES 13 A 236 GLN GLU ALA MET ASP ILE SER LYS LYS GLU MET PRO PRO SEQRES 14 A 236 THR ASN PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER SEQRES 15 A 236 VAL PHE HIS TYR GLU ILE ALA ASN SER PRO GLU GLU ALA SEQRES 16 A 236 ILE SER LEU ALA LYS THR THR PHE ASP GLU ALA MET ALA SEQRES 17 A 236 ASP LEU HIS THR LEU SER GLU ASP SER TYR LYS ASP SER SEQRES 18 A 236 THR LEU ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU SEQRES 19 A 236 TRP THR HET HY5 A 301 104 HET TPO A 302 19 HET CL A 303 1 HET NA A 304 1 HET NA A 305 1 HETNAM HY5 FC-NCPC HETNAM TPO PHOSPHOTHREONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 HY5 C36 H57 N O10 FORMUL 3 TPO C4 H10 N O6 P FORMUL 4 CL CL 1- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *326(H2 O) HELIX 1 AA1 GLU A 2 ALA A 16 1 15 HELIX 2 AA2 ARG A 18 GLU A 31 1 14 HELIX 3 AA3 SER A 37 ASN A 70 1 34 HELIX 4 AA4 PRO A 79 HIS A 106 1 28 HELIX 5 AA5 HIS A 106 ALA A 111 1 6 HELIX 6 AA6 ASP A 113 ALA A 135 1 23 HELIX 7 AA7 LYS A 140 MET A 162 1 23 HELIX 8 AA8 ASN A 166 ILE A 183 1 18 HELIX 9 AA9 SER A 186 ALA A 203 1 18 HELIX 10 AB1 ASP A 204 LEU A 208 5 5 HELIX 11 AB2 SER A 212 THR A 231 1 20 LINK OE1 GLU A 2 NA NA A 305 1555 1555 2.50 LINK OE1 GLU A 2 NA NA A 305 1555 3654 2.50 LINK OE1AGLN A 8 NA NA A 304 1555 4555 2.85 LINK OE1BGLN A 8 NA NA A 304 1555 4555 3.01 LINK O LYS A 77 NA NA A 304 1555 1555 2.36 LINK OE1 GLU A 80 NA NA A 304 1555 1555 2.40 LINK OE2 GLU A 80 NA NA A 304 1555 1555 2.87 LINK NA NA A 304 O HOH A 406 1555 4555 2.51 LINK NA NA A 304 O HOH A 476 1555 1555 2.84 LINK NA NA A 304 O HOH A 607 1555 1555 2.36 LINK NA NA A 305 O HOH A 481 1555 1555 2.67 LINK NA NA A 305 O HOH A 481 1555 3654 2.67 LINK NA NA A 305 O HOH A 540 1555 1555 2.36 LINK NA NA A 305 O HOH A 540 1555 3654 2.36 LINK NA NA A 305 O HOH A 668 1555 1555 2.67 LINK NA NA A 305 O HOH A 668 1555 3654 2.67 SITE 1 AC1 15 GLU A 39 ASN A 42 LEU A 43 PHE A 119 SITE 2 AC1 15 LYS A 122 MET A 123 PRO A 167 ASP A 215 SITE 3 AC1 15 LEU A 218 HOH A 408 HOH A 418 HOH A 436 SITE 4 AC1 15 HOH A 496 HOH A 570 HOH A 591 SITE 1 AC2 10 ARG A 56 ARG A 129 TYR A 130 ASN A 175 SITE 2 AC2 10 VAL A 178 HOH A 434 HOH A 464 HOH A 504 SITE 3 AC2 10 HOH A 513 HOH A 577 SITE 1 AC3 3 LYS A 9 HOH A 642 HOH A 683 SITE 1 AC4 6 GLN A 8 LYS A 77 GLU A 80 HOH A 406 SITE 2 AC4 6 HOH A 476 HOH A 607 SITE 1 AC5 4 GLU A 2 HOH A 481 HOH A 540 HOH A 668 CRYST1 82.854 111.737 62.802 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015923 0.00000