HEADER HYDROLASE 12-JAN-19 6QGN TITLE CRYSTAL STRUCTURE OF APT1 BOUND TO 2-BROMOPALMITATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-PROTEIN THIOESTERASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HAPT1,LYSOPHOSPHOLIPASE 1,LYSOPHOSPHOLIPASE I,LYSOPLA I; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LYPLA1, APT1, LPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYL-PROTEIN THIOESTERASE 2-BROMOPALMITATE DEPALMITOYLATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MARCAIDA,M.AUDAGNOTTO,S.HO,F.POJER,G.VAN DER GOOT,M.DAL PERARO REVDAT 4 24-JAN-24 6QGN 1 REMARK REVDAT 3 31-MAR-21 6QGN 1 JRNL REVDAT 2 17-MAR-21 6QGN 1 JRNL REVDAT 1 05-FEB-20 6QGN 0 JRNL AUTH L.ABRAMI,M.AUDAGNOTTO,S.HO,M.J.MARCAIDA,F.S.MESQUITA, JRNL AUTH 2 M.U.ANWAR,P.A.SANDOZ,G.FONTI,F.POJER,M.DAL PERARO, JRNL AUTH 3 F.G.VAN DER GOOT JRNL TITL PALMITOYLATED ACYL PROTEIN THIOESTERASE APT2 DEFORMS JRNL TITL 2 MEMBRANES TO EXTRACT SUBSTRATE ACYL CHAINS. JRNL REF NAT.CHEM.BIOL. 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 33707782 JRNL DOI 10.1038/S41589-021-00753-2 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 66823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4382 - 6.1335 1.00 2737 166 0.2105 0.2210 REMARK 3 2 6.1335 - 4.8701 1.00 2609 159 0.2211 0.2585 REMARK 3 3 4.8701 - 4.2549 1.00 2594 142 0.1997 0.2135 REMARK 3 4 4.2549 - 3.8661 1.00 2585 136 0.2169 0.2549 REMARK 3 5 3.8661 - 3.5891 1.00 2577 128 0.2295 0.2714 REMARK 3 6 3.5891 - 3.3776 1.00 2535 157 0.2351 0.2608 REMARK 3 7 3.3776 - 3.2085 1.00 2569 110 0.2407 0.3112 REMARK 3 8 3.2085 - 3.0688 1.00 2529 151 0.2480 0.2938 REMARK 3 9 3.0688 - 2.9507 1.00 2535 122 0.2443 0.2748 REMARK 3 10 2.9507 - 2.8489 1.00 2542 152 0.2434 0.3215 REMARK 3 11 2.8489 - 2.7598 1.00 2528 140 0.2357 0.3003 REMARK 3 12 2.7598 - 2.6810 1.00 2494 141 0.2324 0.2611 REMARK 3 13 2.6810 - 2.6104 1.00 2542 122 0.2423 0.3120 REMARK 3 14 2.6104 - 2.5467 1.00 2537 122 0.2386 0.3080 REMARK 3 15 2.5467 - 2.4888 1.00 2523 139 0.2413 0.3093 REMARK 3 16 2.4888 - 2.4358 1.00 2507 142 0.2380 0.2841 REMARK 3 17 2.4358 - 2.3871 1.00 2518 140 0.2351 0.3261 REMARK 3 18 2.3871 - 2.3421 1.00 2516 125 0.2230 0.2840 REMARK 3 19 2.3421 - 2.3003 1.00 2529 131 0.2320 0.2655 REMARK 3 20 2.3003 - 2.2613 1.00 2462 144 0.2351 0.3300 REMARK 3 21 2.2613 - 2.2248 1.00 2565 118 0.2443 0.3360 REMARK 3 22 2.2248 - 2.1906 1.00 2504 115 0.2469 0.3190 REMARK 3 23 2.1906 - 2.1583 1.00 2509 160 0.2432 0.3018 REMARK 3 24 2.1583 - 2.1279 1.00 2504 132 0.2455 0.2996 REMARK 3 25 2.1279 - 2.0992 0.94 2327 152 0.2751 0.3279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6962 REMARK 3 ANGLE : 0.830 9453 REMARK 3 CHIRALITY : 0.049 1078 REMARK 3 PLANARITY : 0.006 1222 REMARK 3 DIHEDRAL : 7.684 5014 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91971 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 46.427 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5SYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: D1 MORPHEUS (MOLECULAR DIMENSIONS) 0.1 REMARK 280 M IMIDAZOLE, 0.1 M MES MONOHYDRATE, 20% V/V PEG 500 MME, 10% W/V REMARK 280 PEG 2000, 20 MM 1,6-HEXANEDIOL, 20 MM 1-BUTANOL, 20 MM 1,2- REMARK 280 PROPANEDIOL, 20 MM 2- PROPANOL, 20 MM 1,4-BUTANEDIOL, 20 MM 1,3- REMARK 280 PROPANEDIOL, PH 6.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.80800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.80800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 ARG B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 ASN B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 ARG C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 3 REMARK 465 ASN C 4 REMARK 465 ASN C 5 REMARK 465 MET C 6 REMARK 465 SER C 7 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 ARG D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLY D 3 REMARK 465 ASN D 4 REMARK 465 ASN D 5 REMARK 465 MET D 6 REMARK 465 SER D 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 409 O HOH A 496 2.13 REMARK 500 OG SER C 183 OD1 ASP D 81 2.15 REMARK 500 O HOH A 505 O HOH A 508 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 18 O GLU C 39 3445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 -70.31 -48.56 REMARK 500 SER A 119 -121.94 53.59 REMARK 500 SER A 143 65.12 34.28 REMARK 500 MET A 207 -145.64 -103.50 REMARK 500 SER A 209 -166.27 -160.96 REMARK 500 ARG B 18 -130.93 -109.63 REMARK 500 ASN B 64 70.97 -113.22 REMARK 500 MET B 65 57.87 26.69 REMARK 500 SER B 71 128.31 -171.98 REMARK 500 SER B 119 -128.28 60.09 REMARK 500 CYS B 144 -158.94 -139.05 REMARK 500 MET B 207 -144.49 -100.40 REMARK 500 SER B 209 -173.09 -178.40 REMARK 500 LEU B 226 58.49 -118.83 REMARK 500 ASN C 64 68.19 -112.98 REMARK 500 ASN C 111 2.12 -69.02 REMARK 500 SER C 119 -120.22 52.48 REMARK 500 CYS C 144 -158.41 -141.85 REMARK 500 MET C 207 -141.33 -101.30 REMARK 500 SER C 209 -148.95 -160.65 REMARK 500 ARG D 18 -106.28 -122.79 REMARK 500 ASN D 64 69.73 -112.72 REMARK 500 SER D 71 135.50 -172.46 REMARK 500 ASN D 111 6.89 -64.87 REMARK 500 SER D 119 -128.12 59.69 REMARK 500 GLN D 154 52.41 -100.44 REMARK 500 PRO D 156 134.49 -37.73 REMARK 500 MET D 207 -140.39 -104.89 REMARK 500 SER D 209 -159.01 -172.83 REMARK 500 LEU D 226 56.18 -116.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J1W A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J1W B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J1W C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J1W D 301 DBREF 6QGN A 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGN B 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGN C 1 230 UNP O75608 LYPA1_HUMAN 1 230 DBREF 6QGN D 1 230 UNP O75608 LYPA1_HUMAN 1 230 SEQADV 6QGN GLY A -2 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER A -1 UNP O75608 EXPRESSION TAG SEQADV 6QGN ARG A 0 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER A 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGN GLY B -2 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER B -1 UNP O75608 EXPRESSION TAG SEQADV 6QGN ARG B 0 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER B 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGN GLY C -2 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER C -1 UNP O75608 EXPRESSION TAG SEQADV 6QGN ARG C 0 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER C 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQADV 6QGN GLY D -2 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER D -1 UNP O75608 EXPRESSION TAG SEQADV 6QGN ARG D 0 UNP O75608 EXPRESSION TAG SEQADV 6QGN SER D 2 UNP O75608 CYS 2 ENGINEERED MUTATION SEQRES 1 A 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 A 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 A 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 A 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 A 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 A 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 A 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 A 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 A 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 A 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 A 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 A 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 A 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 A 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 A 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 A 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 A 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 A 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 B 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 B 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 B 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 B 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 B 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 B 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 B 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 B 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 B 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 B 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 B 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 B 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 B 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 B 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 B 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 B 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 B 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 B 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 C 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 C 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 C 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 C 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 C 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 C 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 C 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 C 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 C 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 C 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 C 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 C 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 C 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 C 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 C 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 C 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 C 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 C 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP SEQRES 1 D 233 GLY SER ARG MET SER GLY ASN ASN MET SER THR PRO LEU SEQRES 2 D 233 PRO ALA ILE VAL PRO ALA ALA ARG LYS ALA THR ALA ALA SEQRES 3 D 233 VAL ILE PHE LEU HIS GLY LEU GLY ASP THR GLY HIS GLY SEQRES 4 D 233 TRP ALA GLU ALA PHE ALA GLY ILE ARG SER SER HIS ILE SEQRES 5 D 233 LYS TYR ILE CYS PRO HIS ALA PRO VAL ARG PRO VAL THR SEQRES 6 D 233 LEU ASN MET ASN VAL ALA MET PRO SER TRP PHE ASP ILE SEQRES 7 D 233 ILE GLY LEU SER PRO ASP SER GLN GLU ASP GLU SER GLY SEQRES 8 D 233 ILE LYS GLN ALA ALA GLU ASN ILE LYS ALA LEU ILE ASP SEQRES 9 D 233 GLN GLU VAL LYS ASN GLY ILE PRO SER ASN ARG ILE ILE SEQRES 10 D 233 LEU GLY GLY PHE SER GLN GLY GLY ALA LEU SER LEU TYR SEQRES 11 D 233 THR ALA LEU THR THR GLN GLN LYS LEU ALA GLY VAL THR SEQRES 12 D 233 ALA LEU SER CYS TRP LEU PRO LEU ARG ALA SER PHE PRO SEQRES 13 D 233 GLN GLY PRO ILE GLY GLY ALA ASN ARG ASP ILE SER ILE SEQRES 14 D 233 LEU GLN CYS HIS GLY ASP CYS ASP PRO LEU VAL PRO LEU SEQRES 15 D 233 MET PHE GLY SER LEU THR VAL GLU LYS LEU LYS THR LEU SEQRES 16 D 233 VAL ASN PRO ALA ASN VAL THR PHE LYS THR TYR GLU GLY SEQRES 17 D 233 MET MET HIS SER SER CYS GLN GLN GLU MET MET ASP VAL SEQRES 18 D 233 LYS GLN PHE ILE ASP LYS LEU LEU PRO PRO ILE ASP HET J1W A 301 49 HET J1W B 301 49 HET J1W C 301 49 HET J1W D 301 49 HETNAM J1W 2-BROMOPALMITIC ACID FORMUL 5 J1W 4(C16 H31 BR O2) FORMUL 9 HOH *438(H2 O) HELIX 1 AA1 GLY A 34 GLY A 43 1 10 HELIX 2 AA2 ASP A 85 GLY A 107 1 23 HELIX 3 AA3 PRO A 109 ASN A 111 5 3 HELIX 4 AA4 SER A 119 THR A 132 1 14 HELIX 5 AA5 LEU A 148 PHE A 152 5 5 HELIX 6 AA6 PRO A 178 VAL A 193 1 16 HELIX 7 AA7 ASN A 194 ALA A 196 5 3 HELIX 8 AA8 CYS A 211 LEU A 226 1 16 HELIX 9 AA9 GLY B 34 GLY B 43 1 10 HELIX 10 AB1 THR B 62 MET B 65 5 4 HELIX 11 AB2 ASP B 85 LYS B 105 1 21 HELIX 12 AB3 PRO B 109 ASN B 111 5 3 HELIX 13 AB4 SER B 119 THR B 132 1 14 HELIX 14 AB5 LEU B 148 PHE B 152 5 5 HELIX 15 AB6 PRO B 178 VAL B 193 1 16 HELIX 16 AB7 ASN B 194 ALA B 196 5 3 HELIX 17 AB8 CYS B 211 LEU B 226 1 16 HELIX 18 AB9 GLY C 34 ILE C 44 1 11 HELIX 19 AC1 THR C 62 MET C 65 5 4 HELIX 20 AC2 ASP C 85 LYS C 105 1 21 HELIX 21 AC3 PRO C 109 ASN C 111 5 3 HELIX 22 AC4 SER C 119 LEU C 130 1 12 HELIX 23 AC5 LEU C 148 PHE C 152 5 5 HELIX 24 AC6 PRO C 178 VAL C 193 1 16 HELIX 25 AC7 ASN C 194 ALA C 196 5 3 HELIX 26 AC8 CYS C 211 LEU C 226 1 16 HELIX 27 AC9 GLY D 34 ARG D 45 1 12 HELIX 28 AD1 ASP D 85 ASN D 106 1 22 HELIX 29 AD2 PRO D 109 ASN D 111 5 3 HELIX 30 AD3 SER D 119 THR D 132 1 14 HELIX 31 AD4 LEU D 148 PHE D 152 5 5 HELIX 32 AD5 PRO D 178 VAL D 193 1 16 HELIX 33 AD6 ASN D 194 ALA D 196 5 3 HELIX 34 AD7 CYS D 211 LEU D 226 1 16 SHEET 1 AA1 7 ALA A 12 VAL A 14 0 SHEET 2 AA1 7 ILE A 49 CYS A 53 -1 O TYR A 51 N VAL A 14 SHEET 3 AA1 7 ALA A 22 LEU A 27 1 N VAL A 24 O ILE A 52 SHEET 4 AA1 7 ILE A 113 PHE A 118 1 O ILE A 114 N ILE A 25 SHEET 5 AA1 7 GLY A 138 LEU A 142 1 O LEU A 142 N GLY A 117 SHEET 6 AA1 7 ILE A 166 GLY A 171 1 O LEU A 167 N ALA A 141 SHEET 7 AA1 7 VAL A 198 TYR A 203 1 O THR A 199 N GLN A 168 SHEET 1 AA2 2 VAL A 58 PRO A 60 0 SHEET 2 AA2 2 ALA A 68 PRO A 70 -1 O MET A 69 N ARG A 59 SHEET 1 AA3 7 ALA B 12 VAL B 14 0 SHEET 2 AA3 7 ILE B 49 CYS B 53 -1 O TYR B 51 N VAL B 14 SHEET 3 AA3 7 ALA B 22 LEU B 27 1 N VAL B 24 O ILE B 52 SHEET 4 AA3 7 ILE B 113 PHE B 118 1 O ILE B 114 N ILE B 25 SHEET 5 AA3 7 GLY B 138 LEU B 142 1 O LEU B 142 N GLY B 117 SHEET 6 AA3 7 ILE B 166 GLY B 171 1 O LEU B 167 N VAL B 139 SHEET 7 AA3 7 VAL B 198 TYR B 203 1 O THR B 199 N GLN B 168 SHEET 1 AA4 2 VAL B 58 PRO B 60 0 SHEET 2 AA4 2 ALA B 68 PRO B 70 -1 O MET B 69 N ARG B 59 SHEET 1 AA5 7 ALA C 12 VAL C 14 0 SHEET 2 AA5 7 ILE C 49 CYS C 53 -1 O CYS C 53 N ALA C 12 SHEET 3 AA5 7 ALA C 22 LEU C 27 1 N VAL C 24 O ILE C 52 SHEET 4 AA5 7 ILE C 113 PHE C 118 1 O PHE C 118 N LEU C 27 SHEET 5 AA5 7 GLY C 138 LEU C 142 1 O LEU C 142 N GLY C 117 SHEET 6 AA5 7 ILE C 166 GLY C 171 1 O LEU C 167 N ALA C 141 SHEET 7 AA5 7 VAL C 198 TYR C 203 1 O THR C 199 N ILE C 166 SHEET 1 AA6 2 VAL C 58 PRO C 60 0 SHEET 2 AA6 2 ALA C 68 PRO C 70 -1 O MET C 69 N ARG C 59 SHEET 1 AA7 7 ALA D 12 VAL D 14 0 SHEET 2 AA7 7 ILE D 49 CYS D 53 -1 O TYR D 51 N VAL D 14 SHEET 3 AA7 7 ALA D 22 LEU D 27 1 N VAL D 24 O ILE D 52 SHEET 4 AA7 7 ILE D 113 PHE D 118 1 O ILE D 114 N ILE D 25 SHEET 5 AA7 7 GLY D 138 LEU D 142 1 O LEU D 142 N GLY D 117 SHEET 6 AA7 7 ILE D 166 GLY D 171 1 O LEU D 167 N VAL D 139 SHEET 7 AA7 7 VAL D 198 TYR D 203 1 O THR D 199 N ILE D 166 SHEET 1 AA8 2 VAL D 58 VAL D 61 0 SHEET 2 AA8 2 VAL D 67 PRO D 70 -1 O MET D 69 N ARG D 59 SITE 1 AC1 11 LEU A 30 ILE A 75 LEU A 78 SER A 119 SITE 2 AC1 11 GLN A 120 TRP A 145 LEU A 176 PHE A 181 SITE 3 AC1 11 LEU A 184 THR A 185 HOH A 417 SITE 1 AC2 11 LEU B 30 ILE B 75 LEU B 78 SER B 119 SITE 2 AC2 11 GLN B 120 TRP B 145 ARG B 149 LEU B 176 SITE 3 AC2 11 PHE B 181 LEU B 184 HIS B 208 SITE 1 AC3 11 LEU C 30 ILE C 75 LEU C 78 SER C 119 SITE 2 AC3 11 GLN C 120 TRP C 145 PHE C 181 LEU C 184 SITE 3 AC3 11 THR C 185 HIS C 208 HOH C 420 SITE 1 AC4 11 LEU D 30 ILE D 75 LEU D 78 SER D 119 SITE 2 AC4 11 GLN D 120 TRP D 145 ARG D 149 VAL D 177 SITE 3 AC4 11 PHE D 181 THR D 185 HIS D 208 CRYST1 58.900 109.616 174.713 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005724 0.00000