HEADER STRUCTURAL PROTEIN 23-JAN-19 6QJA TITLE ORGANIZATIONAL PRINCIPLES OF THE NUMA-DYNEIN INTERACTION INTERFACE AND TITLE 2 IMPLICATIONS FOR MITOTIC SPINDLE FUNCTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR MITOTIC APPARATUS PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NUCLEAR MATRIX PROTEIN-22,NMP-22,NUCLEAR MITOTIC APPARATUS COMPND 5 PROTEIN,NUMA PROTEIN,SP-H ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUMA1, NMP22, NUMA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM14 KEYWDS HOOK DOMAIN, MOTOR PROTEIN-ASSOCIATED, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.RENNA,F.RIZZELLI,M.CARMINATI,C.GADDONI,L.PIROVANO,V.CECATIELLO, AUTHOR 2 S.PASQUALATO,M.MAPELLI REVDAT 6 15-MAY-24 6QJA 1 REMARK REVDAT 5 15-JUL-20 6QJA 1 JRNL REVDAT 4 27-MAY-20 6QJA 1 JRNL REVDAT 3 06-MAY-20 6QJA 1 TITLE AUTHOR REVDAT 2 29-APR-20 6QJA 1 JRNL REVDAT 1 05-FEB-20 6QJA 0 JRNL AUTH C.RENNA,F.RIZZELLI,M.CARMINATI,C.GADDONI,L.PIROVANO, JRNL AUTH 2 V.CECATIELLO,S.PASQUALATO,M.MAPELLI JRNL TITL ORGANIZATIONAL PRINCIPLES OF THE NUMA-DYNEIN INTERACTION JRNL TITL 2 INTERFACE AND IMPLICATIONS FOR MITOTIC SPINDLE FUNCTIONS. JRNL REF STRUCTURE V. 28 820 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 32413290 JRNL DOI 10.1016/J.STR.2020.04.017 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 99539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5242 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 388 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.42000 REMARK 3 B22 (A**2) : 3.47000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4826 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4441 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6537 ; 1.670 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10380 ; 1.149 ; 1.634 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;34.826 ;23.991 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;13.494 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.031 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5337 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 847 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9267 ; 9.357 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 317 ;42.512 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9368 ;41.463 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 153 B 1 153 4205 0.160 0.050 REMARK 3 2 A 2 152 C 2 152 4138 0.160 0.050 REMARK 3 3 A 1 152 D 1 152 4285 0.170 0.050 REMARK 3 4 B 2 152 C 2 152 4021 0.150 0.050 REMARK 3 5 B 1 153 D 1 153 4200 0.160 0.050 REMARK 3 6 C 2 152 D 2 152 4088 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6QJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 67.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE, 0.2 M REMARK 280 MAGNESIUM CHLORIDE, 28 % PEG 4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.86500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.90500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.90500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.86500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 SER B 109 REMARK 465 SER B 110 REMARK 465 LYS B 111 REMARK 465 SER B 112 REMARK 465 PRO B 113 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 MET C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 GLY C 49 REMARK 465 GLN C 50 REMARK 465 GLN C 51 REMARK 465 ILE C 52 REMARK 465 LEU C 53 REMARK 465 LYS C 54 REMARK 465 PRO C 78 REMARK 465 LYS C 153 REMARK 465 GLY D -3 REMARK 465 PRO D -2 REMARK 465 MET D -1 REMARK 465 GLY D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 GLN A 51 CG CD OE1 NE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 141 CG CD1 CD2 REMARK 470 MET B 1 CG SD CE REMARK 470 THR B 46 OG1 CG2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 SER B 77 OG REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 CYS B 80 SG REMARK 470 THR B 107 OG1 CG2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 115 CG OD1 OD2 REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 GLU C 59 CG CD OE1 OE2 REMARK 470 SER C 77 OG REMARK 470 CYS C 80 SG REMARK 470 GLN C 85 CG CD OE1 NE2 REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 MET D 1 CG SD CE REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 GLN D 50 CG CD OE1 NE2 REMARK 470 GLN D 51 CG CD OE1 NE2 REMARK 470 GLN D 55 CG CD OE1 NE2 REMARK 470 LYS D 111 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 72 CZ ARG A 72 NH1 0.080 REMARK 500 GLN A 85 CD GLN A 85 OE1 0.159 REMARK 500 GLN A 85 CD GLN A 85 NE2 0.168 REMARK 500 HIS C 74 CE1 HIS C 74 NE2 0.126 REMARK 500 GLU C 138 CD GLU C 138 OE1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 PHE C 119 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE C 119 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 74 75.21 -119.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 114 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 443 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 312 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 313 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 330 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 202 DBREF 6QJA A 1 153 UNP Q14980 NUMA1_HUMAN 1 153 DBREF 6QJA B 1 153 UNP Q14980 NUMA1_HUMAN 1 153 DBREF 6QJA C 1 153 UNP Q14980 NUMA1_HUMAN 1 153 DBREF 6QJA D 1 153 UNP Q14980 NUMA1_HUMAN 1 153 SEQADV 6QJA GLY A -3 UNP Q14980 EXPRESSION TAG SEQADV 6QJA PRO A -2 UNP Q14980 EXPRESSION TAG SEQADV 6QJA MET A -1 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY A 0 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY B -3 UNP Q14980 EXPRESSION TAG SEQADV 6QJA PRO B -2 UNP Q14980 EXPRESSION TAG SEQADV 6QJA MET B -1 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY B 0 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY C -3 UNP Q14980 EXPRESSION TAG SEQADV 6QJA PRO C -2 UNP Q14980 EXPRESSION TAG SEQADV 6QJA MET C -1 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY C 0 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY D -3 UNP Q14980 EXPRESSION TAG SEQADV 6QJA PRO D -2 UNP Q14980 EXPRESSION TAG SEQADV 6QJA MET D -1 UNP Q14980 EXPRESSION TAG SEQADV 6QJA GLY D 0 UNP Q14980 EXPRESSION TAG SEQRES 1 A 157 GLY PRO MET GLY MET THR LEU HIS ALA THR ARG GLY ALA SEQRES 2 A 157 ALA LEU LEU SER TRP VAL ASN SER LEU HIS VAL ALA ASP SEQRES 3 A 157 PRO VAL GLU ALA VAL LEU GLN LEU GLN ASP CYS SER ILE SEQRES 4 A 157 PHE ILE LYS ILE ILE ASP ARG ILE HIS GLY THR GLU GLU SEQRES 5 A 157 GLY GLN GLN ILE LEU LYS GLN PRO VAL SER GLU ARG LEU SEQRES 6 A 157 ASP PHE VAL CYS SER PHE LEU GLN LYS ASN ARG LYS HIS SEQRES 7 A 157 PRO SER SER PRO GLU CYS LEU VAL SER ALA GLN LYS VAL SEQRES 8 A 157 LEU GLU GLY SER GLU LEU GLU LEU ALA LYS MET THR MET SEQRES 9 A 157 LEU LEU LEU TYR HIS SER THR MET SER SER LYS SER PRO SEQRES 10 A 157 ARG ASP TRP GLU GLN PHE GLU TYR LYS ILE GLN ALA GLU SEQRES 11 A 157 LEU ALA VAL ILE LEU LYS PHE VAL LEU ASP HIS GLU ASP SEQRES 12 A 157 GLY LEU ASN LEU ASN GLU ASP LEU GLU ASN PHE LEU GLN SEQRES 13 A 157 LYS SEQRES 1 B 157 GLY PRO MET GLY MET THR LEU HIS ALA THR ARG GLY ALA SEQRES 2 B 157 ALA LEU LEU SER TRP VAL ASN SER LEU HIS VAL ALA ASP SEQRES 3 B 157 PRO VAL GLU ALA VAL LEU GLN LEU GLN ASP CYS SER ILE SEQRES 4 B 157 PHE ILE LYS ILE ILE ASP ARG ILE HIS GLY THR GLU GLU SEQRES 5 B 157 GLY GLN GLN ILE LEU LYS GLN PRO VAL SER GLU ARG LEU SEQRES 6 B 157 ASP PHE VAL CYS SER PHE LEU GLN LYS ASN ARG LYS HIS SEQRES 7 B 157 PRO SER SER PRO GLU CYS LEU VAL SER ALA GLN LYS VAL SEQRES 8 B 157 LEU GLU GLY SER GLU LEU GLU LEU ALA LYS MET THR MET SEQRES 9 B 157 LEU LEU LEU TYR HIS SER THR MET SER SER LYS SER PRO SEQRES 10 B 157 ARG ASP TRP GLU GLN PHE GLU TYR LYS ILE GLN ALA GLU SEQRES 11 B 157 LEU ALA VAL ILE LEU LYS PHE VAL LEU ASP HIS GLU ASP SEQRES 12 B 157 GLY LEU ASN LEU ASN GLU ASP LEU GLU ASN PHE LEU GLN SEQRES 13 B 157 LYS SEQRES 1 C 157 GLY PRO MET GLY MET THR LEU HIS ALA THR ARG GLY ALA SEQRES 2 C 157 ALA LEU LEU SER TRP VAL ASN SER LEU HIS VAL ALA ASP SEQRES 3 C 157 PRO VAL GLU ALA VAL LEU GLN LEU GLN ASP CYS SER ILE SEQRES 4 C 157 PHE ILE LYS ILE ILE ASP ARG ILE HIS GLY THR GLU GLU SEQRES 5 C 157 GLY GLN GLN ILE LEU LYS GLN PRO VAL SER GLU ARG LEU SEQRES 6 C 157 ASP PHE VAL CYS SER PHE LEU GLN LYS ASN ARG LYS HIS SEQRES 7 C 157 PRO SER SER PRO GLU CYS LEU VAL SER ALA GLN LYS VAL SEQRES 8 C 157 LEU GLU GLY SER GLU LEU GLU LEU ALA LYS MET THR MET SEQRES 9 C 157 LEU LEU LEU TYR HIS SER THR MET SER SER LYS SER PRO SEQRES 10 C 157 ARG ASP TRP GLU GLN PHE GLU TYR LYS ILE GLN ALA GLU SEQRES 11 C 157 LEU ALA VAL ILE LEU LYS PHE VAL LEU ASP HIS GLU ASP SEQRES 12 C 157 GLY LEU ASN LEU ASN GLU ASP LEU GLU ASN PHE LEU GLN SEQRES 13 C 157 LYS SEQRES 1 D 157 GLY PRO MET GLY MET THR LEU HIS ALA THR ARG GLY ALA SEQRES 2 D 157 ALA LEU LEU SER TRP VAL ASN SER LEU HIS VAL ALA ASP SEQRES 3 D 157 PRO VAL GLU ALA VAL LEU GLN LEU GLN ASP CYS SER ILE SEQRES 4 D 157 PHE ILE LYS ILE ILE ASP ARG ILE HIS GLY THR GLU GLU SEQRES 5 D 157 GLY GLN GLN ILE LEU LYS GLN PRO VAL SER GLU ARG LEU SEQRES 6 D 157 ASP PHE VAL CYS SER PHE LEU GLN LYS ASN ARG LYS HIS SEQRES 7 D 157 PRO SER SER PRO GLU CYS LEU VAL SER ALA GLN LYS VAL SEQRES 8 D 157 LEU GLU GLY SER GLU LEU GLU LEU ALA LYS MET THR MET SEQRES 9 D 157 LEU LEU LEU TYR HIS SER THR MET SER SER LYS SER PRO SEQRES 10 D 157 ARG ASP TRP GLU GLN PHE GLU TYR LYS ILE GLN ALA GLU SEQRES 11 D 157 LEU ALA VAL ILE LEU LYS PHE VAL LEU ASP HIS GLU ASP SEQRES 12 D 157 GLY LEU ASN LEU ASN GLU ASP LEU GLU ASN PHE LEU GLN SEQRES 13 D 157 LYS HET CL A 201 1 HET CL D 201 1 HET MG D 202 1 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 5 CL 2(CL 1-) FORMUL 7 MG MG 2+ FORMUL 8 HOH *503(H2 O) HELIX 1 AA1 HIS A 4 LEU A 18 1 15 HELIX 2 AA2 ALA A 26 GLN A 31 5 6 HELIX 3 AA3 CYS A 33 GLY A 45 1 13 HELIX 4 AA4 GLU A 47 LEU A 53 1 7 HELIX 5 AA5 PRO A 56 ASN A 71 1 16 HELIX 6 AA6 SER A 83 GLU A 89 1 7 HELIX 7 AA7 SER A 91 MET A 108 1 18 HELIX 8 AA8 ASP A 115 PHE A 119 5 5 HELIX 9 AA9 GLU A 120 GLU A 138 1 19 HELIX 10 AB1 ASN A 142 LYS A 153 1 12 HELIX 11 AB2 HIS B 4 LEU B 18 1 15 HELIX 12 AB3 ALA B 26 GLN B 31 5 6 HELIX 13 AB4 CYS B 33 GLY B 45 1 13 HELIX 14 AB5 GLU B 47 LEU B 53 1 7 HELIX 15 AB6 PRO B 56 ASN B 71 1 16 HELIX 16 AB7 SER B 83 GLU B 89 1 7 HELIX 17 AB8 SER B 91 MET B 108 1 18 HELIX 18 AB9 GLU B 120 GLU B 138 1 19 HELIX 19 AC1 ASN B 142 GLN B 152 1 11 HELIX 20 AC2 HIS C 4 LEU C 18 1 15 HELIX 21 AC3 ALA C 26 GLN C 31 5 6 HELIX 22 AC4 CYS C 33 GLY C 45 1 13 HELIX 23 AC5 PRO C 56 ASN C 71 1 16 HELIX 24 AC6 SER C 83 GLU C 89 1 7 HELIX 25 AC7 SER C 91 SER C 109 1 19 HELIX 26 AC8 ASP C 115 PHE C 119 5 5 HELIX 27 AC9 GLU C 120 GLU C 138 1 19 HELIX 28 AD1 ASN C 142 GLN C 152 1 11 HELIX 29 AD2 HIS D 4 LEU D 18 1 15 HELIX 30 AD3 ALA D 26 GLN D 31 5 6 HELIX 31 AD4 CYS D 33 GLY D 45 1 13 HELIX 32 AD5 GLU D 47 LEU D 53 1 7 HELIX 33 AD6 PRO D 56 ARG D 72 1 17 HELIX 34 AD7 SER D 83 GLU D 89 1 7 HELIX 35 AD8 SER D 91 SER D 110 1 20 HELIX 36 AD9 GLU D 120 HIS D 137 1 18 HELIX 37 AE1 ASN D 142 GLN D 152 1 11 SITE 1 AC1 3 TRP A 14 ARG A 114 HOH A 369 SITE 1 AC2 3 ARG D 72 VAL D 82 ASN D 144 SITE 1 AC3 2 SER D 13 GLU D 120 CRYST1 45.730 112.850 135.810 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021867 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007363 0.00000