data_6QJM # _entry.id 6QJM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6QJM pdb_00006qjm 10.2210/pdb6qjm/pdb WWPDB D_1292100285 ? ? EMDB EMD-4564 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-02-27 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QJM _pdbx_database_status.recvd_initial_deposition_date 2019-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4564 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 0000-0002-3011-9956 'Falcon, B.' 2 0000-0002-8176-2618 'Murzin, A.G.' 3 ? 'Fan, J.' 4 ? 'Crowther, R.A.' 5 ? 'Goedert, M.' 6 0000-0002-5214-7886 'Scheres, S.H.W.' 7 0000-0002-0462-6540 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer's and Pick's diseases. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.43584 _citation.pdbx_database_id_PubMed 30720432 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 0000-0002-3011-9956 primary 'Falcon, B.' 2 ? primary 'Murzin, A.G.' 3 ? primary 'Fan, J.' 4 ? primary 'Crowther, R.A.' 5 ? primary 'Goedert, M.' 6 ? primary 'Scheres, S.H.' 7 0000-0002-0462-6540 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 5189.081 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _entity_poly.pdbx_seq_one_letter_code_can KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 GLN n 1 4 ILE n 1 5 ILE n 1 6 ASN n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 ASP n 1 11 LEU n 1 12 SER n 1 13 ASN n 1 14 VAL n 1 15 GLN n 1 16 SER n 1 17 LYS n 1 18 CYS n 1 19 GLY n 1 20 SER n 1 21 LYS n 1 22 ASP n 1 23 ASN n 1 24 ILE n 1 25 LYS n 1 26 HIS n 1 27 VAL n 1 28 PRO n 1 29 GLY n 1 30 GLY n 1 31 GLY n 1 32 SER n 1 33 VAL n 1 34 GLN n 1 35 ILE n 1 36 VAL n 1 37 TYR n 1 38 LYS n 1 39 PRO n 1 40 VAL n 1 41 ASP n 1 42 LEU n 1 43 SER n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 SER n 1 48 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MAPT, MAPTL, MTBT1, TAU' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRK172 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 274 274 LYS LYS A . n A 1 2 VAL 2 275 275 VAL VAL A . n A 1 3 GLN 3 276 276 GLN GLN A . n A 1 4 ILE 4 277 277 ILE ILE A . n A 1 5 ILE 5 278 278 ILE ILE A . n A 1 6 ASN 6 279 279 ASN ASN A . n A 1 7 LYS 7 280 280 LYS LYS A . n A 1 8 LYS 8 281 281 LYS LYS A . n A 1 9 LEU 9 282 282 LEU LEU A . n A 1 10 ASP 10 283 283 ASP ASP A . n A 1 11 LEU 11 284 284 LEU LEU A . n A 1 12 SER 12 285 285 SER SER A . n A 1 13 ASN 13 286 286 ASN ASN A . n A 1 14 VAL 14 287 287 VAL VAL A . n A 1 15 GLN 15 288 288 GLN GLN A . n A 1 16 SER 16 289 289 SER SER A . n A 1 17 LYS 17 290 290 LYS LYS A . n A 1 18 CYS 18 291 291 CYS CYS A . n A 1 19 GLY 19 292 292 GLY GLY A . n A 1 20 SER 20 293 ? ? ? A . n A 1 21 LYS 21 294 ? ? ? A . n A 1 22 ASP 22 295 ? ? ? A . n A 1 23 ASN 23 296 ? ? ? A . n A 1 24 ILE 24 297 ? ? ? A . n A 1 25 LYS 25 298 ? ? ? A . n A 1 26 HIS 26 299 ? ? ? A . n A 1 27 VAL 27 300 ? ? ? A . n A 1 28 PRO 28 301 ? ? ? A . n A 1 29 GLY 29 302 ? ? ? A . n A 1 30 GLY 30 303 ? ? ? A . n A 1 31 GLY 31 304 304 GLY GLY A . n A 1 32 SER 32 305 305 SER SER A . n A 1 33 VAL 33 306 306 VAL VAL A . n A 1 34 GLN 34 307 307 GLN GLN A . n A 1 35 ILE 35 308 308 ILE ILE A . n A 1 36 VAL 36 309 309 VAL VAL A . n A 1 37 TYR 37 310 310 TYR TYR A . n A 1 38 LYS 38 311 311 LYS LYS A . n A 1 39 PRO 39 312 312 PRO PRO A . n A 1 40 VAL 40 313 313 VAL VAL A . n A 1 41 ASP 41 314 314 ASP ASP A . n A 1 42 LEU 42 315 315 LEU LEU A . n A 1 43 SER 43 316 316 SER SER A . n A 1 44 LYS 44 317 317 LYS LYS A . n A 1 45 VAL 45 318 318 VAL VAL A . n A 1 46 THR 46 319 319 THR THR A . n A 1 47 SER 47 320 320 SER SER A . n A 1 48 LYS 48 321 321 LYS LYS A . n B 1 1 LYS 1 274 274 LYS LYS B . n B 1 2 VAL 2 275 275 VAL VAL B . n B 1 3 GLN 3 276 276 GLN GLN B . n B 1 4 ILE 4 277 277 ILE ILE B . n B 1 5 ILE 5 278 278 ILE ILE B . n B 1 6 ASN 6 279 279 ASN ASN B . n B 1 7 LYS 7 280 280 LYS LYS B . n B 1 8 LYS 8 281 281 LYS LYS B . n B 1 9 LEU 9 282 282 LEU LEU B . n B 1 10 ASP 10 283 283 ASP ASP B . n B 1 11 LEU 11 284 284 LEU LEU B . n B 1 12 SER 12 285 285 SER SER B . n B 1 13 ASN 13 286 286 ASN ASN B . n B 1 14 VAL 14 287 287 VAL VAL B . n B 1 15 GLN 15 288 288 GLN GLN B . n B 1 16 SER 16 289 289 SER SER B . n B 1 17 LYS 17 290 290 LYS LYS B . n B 1 18 CYS 18 291 291 CYS CYS B . n B 1 19 GLY 19 292 292 GLY GLY B . n B 1 20 SER 20 293 ? ? ? B . n B 1 21 LYS 21 294 ? ? ? B . n B 1 22 ASP 22 295 ? ? ? B . n B 1 23 ASN 23 296 ? ? ? B . n B 1 24 ILE 24 297 ? ? ? B . n B 1 25 LYS 25 298 ? ? ? B . n B 1 26 HIS 26 299 ? ? ? B . n B 1 27 VAL 27 300 ? ? ? B . n B 1 28 PRO 28 301 ? ? ? B . n B 1 29 GLY 29 302 ? ? ? B . n B 1 30 GLY 30 303 ? ? ? B . n B 1 31 GLY 31 304 304 GLY GLY B . n B 1 32 SER 32 305 305 SER SER B . n B 1 33 VAL 33 306 306 VAL VAL B . n B 1 34 GLN 34 307 307 GLN GLN B . n B 1 35 ILE 35 308 308 ILE ILE B . n B 1 36 VAL 36 309 309 VAL VAL B . n B 1 37 TYR 37 310 310 TYR TYR B . n B 1 38 LYS 38 311 311 LYS LYS B . n B 1 39 PRO 39 312 312 PRO PRO B . n B 1 40 VAL 40 313 313 VAL VAL B . n B 1 41 ASP 41 314 314 ASP ASP B . n B 1 42 LEU 42 315 315 LEU LEU B . n B 1 43 SER 43 316 316 SER SER B . n B 1 44 LYS 44 317 317 LYS LYS B . n B 1 45 VAL 45 318 318 VAL VAL B . n B 1 46 THR 46 319 319 THR THR B . n B 1 47 SER 47 320 320 SER SER B . n B 1 48 LYS 48 321 321 LYS LYS B . n C 1 1 LYS 1 274 274 LYS LYS C . n C 1 2 VAL 2 275 275 VAL VAL C . n C 1 3 GLN 3 276 276 GLN GLN C . n C 1 4 ILE 4 277 277 ILE ILE C . n C 1 5 ILE 5 278 278 ILE ILE C . n C 1 6 ASN 6 279 279 ASN ASN C . n C 1 7 LYS 7 280 280 LYS LYS C . n C 1 8 LYS 8 281 281 LYS LYS C . n C 1 9 LEU 9 282 282 LEU LEU C . n C 1 10 ASP 10 283 283 ASP ASP C . n C 1 11 LEU 11 284 284 LEU LEU C . n C 1 12 SER 12 285 285 SER SER C . n C 1 13 ASN 13 286 286 ASN ASN C . n C 1 14 VAL 14 287 287 VAL VAL C . n C 1 15 GLN 15 288 288 GLN GLN C . n C 1 16 SER 16 289 289 SER SER C . n C 1 17 LYS 17 290 290 LYS LYS C . n C 1 18 CYS 18 291 291 CYS CYS C . n C 1 19 GLY 19 292 292 GLY GLY C . n C 1 20 SER 20 293 ? ? ? C . n C 1 21 LYS 21 294 ? ? ? C . n C 1 22 ASP 22 295 ? ? ? C . n C 1 23 ASN 23 296 ? ? ? C . n C 1 24 ILE 24 297 ? ? ? C . n C 1 25 LYS 25 298 ? ? ? C . n C 1 26 HIS 26 299 ? ? ? C . n C 1 27 VAL 27 300 ? ? ? C . n C 1 28 PRO 28 301 ? ? ? C . n C 1 29 GLY 29 302 ? ? ? C . n C 1 30 GLY 30 303 ? ? ? C . n C 1 31 GLY 31 304 304 GLY GLY C . n C 1 32 SER 32 305 305 SER SER C . n C 1 33 VAL 33 306 306 VAL VAL C . n C 1 34 GLN 34 307 307 GLN GLN C . n C 1 35 ILE 35 308 308 ILE ILE C . n C 1 36 VAL 36 309 309 VAL VAL C . n C 1 37 TYR 37 310 310 TYR TYR C . n C 1 38 LYS 38 311 311 LYS LYS C . n C 1 39 PRO 39 312 312 PRO PRO C . n C 1 40 VAL 40 313 313 VAL VAL C . n C 1 41 ASP 41 314 314 ASP ASP C . n C 1 42 LEU 42 315 315 LEU LEU C . n C 1 43 SER 43 316 316 SER SER C . n C 1 44 LYS 44 317 317 LYS LYS C . n C 1 45 VAL 45 318 318 VAL VAL C . n C 1 46 THR 46 319 319 THR THR C . n C 1 47 SER 47 320 320 SER SER C . n C 1 48 LYS 48 321 321 LYS LYS C . n # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6QJM _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QJM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6QJM _struct.title 'Cryo-EM structure of heparin-induced 2N4R tau twister filaments' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QJM _struct_keywords.text 'Recombinant tau protein, heparin, filament, cross-beta structure, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform P10636-8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSK _struct_ref.pdbx_align_begin 274 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QJM A 1 ? 48 ? P10636 274 ? 321 ? 274 321 2 1 6QJM B 1 ? 48 ? P10636 274 ? 321 ? 274 321 3 1 6QJM C 1 ? 48 ? P10636 274 ? 321 ? 274 321 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7080 ? 1 MORE -19 ? 1 'SSA (A^2)' 7620 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'We used Thioflavin T fluorescence to check the kinetic assays of the filament assembly.' 2 1 microscopy 'We used negative-stain electron microscopy to check the morphology of assembled filaments.' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 2 ? LYS B 7 ? VAL B 275 LYS B 280 AA1 2 VAL A 2 ? LYS A 7 ? VAL A 275 LYS A 280 AA1 3 VAL C 2 ? LYS C 7 ? VAL C 275 LYS C 280 AA2 1 ASP B 10 ? GLN B 15 ? ASP B 283 GLN B 288 AA2 2 ASP A 10 ? GLN A 15 ? ASP A 283 GLN A 288 AA2 3 ASP C 10 ? GLN C 15 ? ASP C 283 GLN C 288 AA3 1 VAL B 33 ? TYR B 37 ? VAL B 306 TYR B 310 AA3 2 VAL A 33 ? TYR A 37 ? VAL A 306 TYR A 310 AA3 3 VAL C 33 ? TYR C 37 ? VAL C 306 TYR C 310 AA4 1 VAL B 40 ? ASP B 41 ? VAL B 313 ASP B 314 AA4 2 VAL A 40 ? ASP A 41 ? VAL A 313 ASP A 314 AA4 3 VAL C 40 ? ASP C 41 ? VAL C 313 ASP C 314 AA5 1 VAL B 45 ? SER B 47 ? VAL B 318 SER B 320 AA5 2 VAL A 45 ? SER A 47 ? VAL A 318 SER A 320 AA5 3 VAL C 45 ? SER C 47 ? VAL C 318 SER C 320 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS B 7 ? O LYS B 280 N ASN A 6 ? N ASN A 279 AA1 2 3 N ILE A 5 ? N ILE A 278 O ASN C 6 ? O ASN C 279 AA2 1 2 O SER B 12 ? O SER B 285 N ASN A 13 ? N ASN A 286 AA2 2 3 N SER A 12 ? N SER A 285 O ASN C 13 ? O ASN C 286 AA3 1 2 O ILE B 35 ? O ILE B 308 N VAL A 36 ? N VAL A 309 AA3 2 3 N VAL A 33 ? N VAL A 306 O GLN C 34 ? O GLN C 307 AA4 1 2 O VAL B 40 ? O VAL B 313 N ASP A 41 ? N ASP A 314 AA4 2 3 N VAL A 40 ? N VAL A 313 O ASP C 41 ? O ASP C 314 AA5 1 2 O THR B 46 ? O THR B 319 N VAL A 45 ? N VAL A 318 AA5 2 3 N THR A 46 ? N THR A 319 O VAL C 45 ? O VAL C 318 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 285 ? ? -92.49 -67.47 2 1 LYS A 311 ? ? 48.43 71.04 3 1 SER B 285 ? ? -92.48 -67.48 4 1 LYS B 311 ? ? 48.47 71.01 5 1 SER C 285 ? ? -92.42 -67.52 6 1 LYS C 311 ? ? 48.43 71.04 # _em_3d_fitting.entry_id 6QJM _em_3d_fitting.id 1 _em_3d_fitting.details ;A stack of three consecutive monomers was refined to preserve nearest-neighbour interactions for the middle chain. Side-chain clashes were detected using MOLPROBITY, and corrected by iterative cycles of real-space refinement in COOT and Fourier-space refinement in REFMAC and PHENIX. For each refined structure, separate model refinements were performed against a single half-map, and the resulting model was compared to the other half-map to confirm the absence of overfitting. ; _em_3d_fitting.overall_b_value 58.51 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Fourier shell correlation' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6QJM _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details 'we performed two rounds of 3D auto-refinement.' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 6 _em_3d_reconstruction.num_particles 141461 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM Tris, pH 7.4, 100mM NaCl' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Recombinant tau protein was induced into filaments by incubation with heparin at 37 C for 3 days' _em_entity_assembly.name 'heparin-induced 2N4R tau twister filaments' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6QJM _em_image_scans.id 1 _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 14 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6QJM _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI POLARA 300' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.0 _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1700 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot force: -12 ; Blot time: 4s' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6QJM _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6QJM _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 293 ? A SER 20 2 1 Y 1 A LYS 294 ? A LYS 21 3 1 Y 1 A ASP 295 ? A ASP 22 4 1 Y 1 A ASN 296 ? A ASN 23 5 1 Y 1 A ILE 297 ? A ILE 24 6 1 Y 1 A LYS 298 ? A LYS 25 7 1 Y 1 A HIS 299 ? A HIS 26 8 1 Y 1 A VAL 300 ? A VAL 27 9 1 Y 1 A PRO 301 ? A PRO 28 10 1 Y 1 A GLY 302 ? A GLY 29 11 1 Y 1 A GLY 303 ? A GLY 30 12 1 Y 1 B SER 293 ? B SER 20 13 1 Y 1 B LYS 294 ? B LYS 21 14 1 Y 1 B ASP 295 ? B ASP 22 15 1 Y 1 B ASN 296 ? B ASN 23 16 1 Y 1 B ILE 297 ? B ILE 24 17 1 Y 1 B LYS 298 ? B LYS 25 18 1 Y 1 B HIS 299 ? B HIS 26 19 1 Y 1 B VAL 300 ? B VAL 27 20 1 Y 1 B PRO 301 ? B PRO 28 21 1 Y 1 B GLY 302 ? B GLY 29 22 1 Y 1 B GLY 303 ? B GLY 30 23 1 Y 1 C SER 293 ? C SER 20 24 1 Y 1 C LYS 294 ? C LYS 21 25 1 Y 1 C ASP 295 ? C ASP 22 26 1 Y 1 C ASN 296 ? C ASN 23 27 1 Y 1 C ILE 297 ? C ILE 24 28 1 Y 1 C LYS 298 ? C LYS 25 29 1 Y 1 C HIS 299 ? C HIS 26 30 1 Y 1 C VAL 300 ? C VAL 27 31 1 Y 1 C PRO 301 ? C PRO 28 32 1 Y 1 C GLY 302 ? C GLY 29 33 1 Y 1 C GLY 303 ? C GLY 30 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 CYS N N N N 34 CYS CA C N R 35 CYS C C N N 36 CYS O O N N 37 CYS CB C N N 38 CYS SG S N N 39 CYS OXT O N N 40 CYS H H N N 41 CYS H2 H N N 42 CYS HA H N N 43 CYS HB2 H N N 44 CYS HB3 H N N 45 CYS HG H N N 46 CYS HXT H N N 47 GLN N N N N 48 GLN CA C N S 49 GLN C C N N 50 GLN O O N N 51 GLN CB C N N 52 GLN CG C N N 53 GLN CD C N N 54 GLN OE1 O N N 55 GLN NE2 N N N 56 GLN OXT O N N 57 GLN H H N N 58 GLN H2 H N N 59 GLN HA H N N 60 GLN HB2 H N N 61 GLN HB3 H N N 62 GLN HG2 H N N 63 GLN HG3 H N N 64 GLN HE21 H N N 65 GLN HE22 H N N 66 GLN HXT H N N 67 GLY N N N N 68 GLY CA C N N 69 GLY C C N N 70 GLY O O N N 71 GLY OXT O N N 72 GLY H H N N 73 GLY H2 H N N 74 GLY HA2 H N N 75 GLY HA3 H N N 76 GLY HXT H N N 77 HIS N N N N 78 HIS CA C N S 79 HIS C C N N 80 HIS O O N N 81 HIS CB C N N 82 HIS CG C Y N 83 HIS ND1 N Y N 84 HIS CD2 C Y N 85 HIS CE1 C Y N 86 HIS NE2 N Y N 87 HIS OXT O N N 88 HIS H H N N 89 HIS H2 H N N 90 HIS HA H N N 91 HIS HB2 H N N 92 HIS HB3 H N N 93 HIS HD1 H N N 94 HIS HD2 H N N 95 HIS HE1 H N N 96 HIS HE2 H N N 97 HIS HXT H N N 98 ILE N N N N 99 ILE CA C N S 100 ILE C C N N 101 ILE O O N N 102 ILE CB C N S 103 ILE CG1 C N N 104 ILE CG2 C N N 105 ILE CD1 C N N 106 ILE OXT O N N 107 ILE H H N N 108 ILE H2 H N N 109 ILE HA H N N 110 ILE HB H N N 111 ILE HG12 H N N 112 ILE HG13 H N N 113 ILE HG21 H N N 114 ILE HG22 H N N 115 ILE HG23 H N N 116 ILE HD11 H N N 117 ILE HD12 H N N 118 ILE HD13 H N N 119 ILE HXT H N N 120 LEU N N N N 121 LEU CA C N S 122 LEU C C N N 123 LEU O O N N 124 LEU CB C N N 125 LEU CG C N N 126 LEU CD1 C N N 127 LEU CD2 C N N 128 LEU OXT O N N 129 LEU H H N N 130 LEU H2 H N N 131 LEU HA H N N 132 LEU HB2 H N N 133 LEU HB3 H N N 134 LEU HG H N N 135 LEU HD11 H N N 136 LEU HD12 H N N 137 LEU HD13 H N N 138 LEU HD21 H N N 139 LEU HD22 H N N 140 LEU HD23 H N N 141 LEU HXT H N N 142 LYS N N N N 143 LYS CA C N S 144 LYS C C N N 145 LYS O O N N 146 LYS CB C N N 147 LYS CG C N N 148 LYS CD C N N 149 LYS CE C N N 150 LYS NZ N N N 151 LYS OXT O N N 152 LYS H H N N 153 LYS H2 H N N 154 LYS HA H N N 155 LYS HB2 H N N 156 LYS HB3 H N N 157 LYS HG2 H N N 158 LYS HG3 H N N 159 LYS HD2 H N N 160 LYS HD3 H N N 161 LYS HE2 H N N 162 LYS HE3 H N N 163 LYS HZ1 H N N 164 LYS HZ2 H N N 165 LYS HZ3 H N N 166 LYS HXT H N N 167 PRO N N N N 168 PRO CA C N S 169 PRO C C N N 170 PRO O O N N 171 PRO CB C N N 172 PRO CG C N N 173 PRO CD C N N 174 PRO OXT O N N 175 PRO H H N N 176 PRO HA H N N 177 PRO HB2 H N N 178 PRO HB3 H N N 179 PRO HG2 H N N 180 PRO HG3 H N N 181 PRO HD2 H N N 182 PRO HD3 H N N 183 PRO HXT H N N 184 SER N N N N 185 SER CA C N S 186 SER C C N N 187 SER O O N N 188 SER CB C N N 189 SER OG O N N 190 SER OXT O N N 191 SER H H N N 192 SER H2 H N N 193 SER HA H N N 194 SER HB2 H N N 195 SER HB3 H N N 196 SER HG H N N 197 SER HXT H N N 198 THR N N N N 199 THR CA C N S 200 THR C C N N 201 THR O O N N 202 THR CB C N R 203 THR OG1 O N N 204 THR CG2 C N N 205 THR OXT O N N 206 THR H H N N 207 THR H2 H N N 208 THR HA H N N 209 THR HB H N N 210 THR HG1 H N N 211 THR HG21 H N N 212 THR HG22 H N N 213 THR HG23 H N N 214 THR HXT H N N 215 TYR N N N N 216 TYR CA C N S 217 TYR C C N N 218 TYR O O N N 219 TYR CB C N N 220 TYR CG C Y N 221 TYR CD1 C Y N 222 TYR CD2 C Y N 223 TYR CE1 C Y N 224 TYR CE2 C Y N 225 TYR CZ C Y N 226 TYR OH O N N 227 TYR OXT O N N 228 TYR H H N N 229 TYR H2 H N N 230 TYR HA H N N 231 TYR HB2 H N N 232 TYR HB3 H N N 233 TYR HD1 H N N 234 TYR HD2 H N N 235 TYR HE1 H N N 236 TYR HE2 H N N 237 TYR HH H N N 238 TYR HXT H N N 239 VAL N N N N 240 VAL CA C N S 241 VAL C C N N 242 VAL O O N N 243 VAL CB C N N 244 VAL CG1 C N N 245 VAL CG2 C N N 246 VAL OXT O N N 247 VAL H H N N 248 VAL H2 H N N 249 VAL HA H N N 250 VAL HB H N N 251 VAL HG11 H N N 252 VAL HG12 H N N 253 VAL HG13 H N N 254 VAL HG21 H N N 255 VAL HG22 H N N 256 VAL HG23 H N N 257 VAL HXT H N N 258 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 CYS N CA sing N N 32 CYS N H sing N N 33 CYS N H2 sing N N 34 CYS CA C sing N N 35 CYS CA CB sing N N 36 CYS CA HA sing N N 37 CYS C O doub N N 38 CYS C OXT sing N N 39 CYS CB SG sing N N 40 CYS CB HB2 sing N N 41 CYS CB HB3 sing N N 42 CYS SG HG sing N N 43 CYS OXT HXT sing N N 44 GLN N CA sing N N 45 GLN N H sing N N 46 GLN N H2 sing N N 47 GLN CA C sing N N 48 GLN CA CB sing N N 49 GLN CA HA sing N N 50 GLN C O doub N N 51 GLN C OXT sing N N 52 GLN CB CG sing N N 53 GLN CB HB2 sing N N 54 GLN CB HB3 sing N N 55 GLN CG CD sing N N 56 GLN CG HG2 sing N N 57 GLN CG HG3 sing N N 58 GLN CD OE1 doub N N 59 GLN CD NE2 sing N N 60 GLN NE2 HE21 sing N N 61 GLN NE2 HE22 sing N N 62 GLN OXT HXT sing N N 63 GLY N CA sing N N 64 GLY N H sing N N 65 GLY N H2 sing N N 66 GLY CA C sing N N 67 GLY CA HA2 sing N N 68 GLY CA HA3 sing N N 69 GLY C O doub N N 70 GLY C OXT sing N N 71 GLY OXT HXT sing N N 72 HIS N CA sing N N 73 HIS N H sing N N 74 HIS N H2 sing N N 75 HIS CA C sing N N 76 HIS CA CB sing N N 77 HIS CA HA sing N N 78 HIS C O doub N N 79 HIS C OXT sing N N 80 HIS CB CG sing N N 81 HIS CB HB2 sing N N 82 HIS CB HB3 sing N N 83 HIS CG ND1 sing Y N 84 HIS CG CD2 doub Y N 85 HIS ND1 CE1 doub Y N 86 HIS ND1 HD1 sing N N 87 HIS CD2 NE2 sing Y N 88 HIS CD2 HD2 sing N N 89 HIS CE1 NE2 sing Y N 90 HIS CE1 HE1 sing N N 91 HIS NE2 HE2 sing N N 92 HIS OXT HXT sing N N 93 ILE N CA sing N N 94 ILE N H sing N N 95 ILE N H2 sing N N 96 ILE CA C sing N N 97 ILE CA CB sing N N 98 ILE CA HA sing N N 99 ILE C O doub N N 100 ILE C OXT sing N N 101 ILE CB CG1 sing N N 102 ILE CB CG2 sing N N 103 ILE CB HB sing N N 104 ILE CG1 CD1 sing N N 105 ILE CG1 HG12 sing N N 106 ILE CG1 HG13 sing N N 107 ILE CG2 HG21 sing N N 108 ILE CG2 HG22 sing N N 109 ILE CG2 HG23 sing N N 110 ILE CD1 HD11 sing N N 111 ILE CD1 HD12 sing N N 112 ILE CD1 HD13 sing N N 113 ILE OXT HXT sing N N 114 LEU N CA sing N N 115 LEU N H sing N N 116 LEU N H2 sing N N 117 LEU CA C sing N N 118 LEU CA CB sing N N 119 LEU CA HA sing N N 120 LEU C O doub N N 121 LEU C OXT sing N N 122 LEU CB CG sing N N 123 LEU CB HB2 sing N N 124 LEU CB HB3 sing N N 125 LEU CG CD1 sing N N 126 LEU CG CD2 sing N N 127 LEU CG HG sing N N 128 LEU CD1 HD11 sing N N 129 LEU CD1 HD12 sing N N 130 LEU CD1 HD13 sing N N 131 LEU CD2 HD21 sing N N 132 LEU CD2 HD22 sing N N 133 LEU CD2 HD23 sing N N 134 LEU OXT HXT sing N N 135 LYS N CA sing N N 136 LYS N H sing N N 137 LYS N H2 sing N N 138 LYS CA C sing N N 139 LYS CA CB sing N N 140 LYS CA HA sing N N 141 LYS C O doub N N 142 LYS C OXT sing N N 143 LYS CB CG sing N N 144 LYS CB HB2 sing N N 145 LYS CB HB3 sing N N 146 LYS CG CD sing N N 147 LYS CG HG2 sing N N 148 LYS CG HG3 sing N N 149 LYS CD CE sing N N 150 LYS CD HD2 sing N N 151 LYS CD HD3 sing N N 152 LYS CE NZ sing N N 153 LYS CE HE2 sing N N 154 LYS CE HE3 sing N N 155 LYS NZ HZ1 sing N N 156 LYS NZ HZ2 sing N N 157 LYS NZ HZ3 sing N N 158 LYS OXT HXT sing N N 159 PRO N CA sing N N 160 PRO N CD sing N N 161 PRO N H sing N N 162 PRO CA C sing N N 163 PRO CA CB sing N N 164 PRO CA HA sing N N 165 PRO C O doub N N 166 PRO C OXT sing N N 167 PRO CB CG sing N N 168 PRO CB HB2 sing N N 169 PRO CB HB3 sing N N 170 PRO CG CD sing N N 171 PRO CG HG2 sing N N 172 PRO CG HG3 sing N N 173 PRO CD HD2 sing N N 174 PRO CD HD3 sing N N 175 PRO OXT HXT sing N N 176 SER N CA sing N N 177 SER N H sing N N 178 SER N H2 sing N N 179 SER CA C sing N N 180 SER CA CB sing N N 181 SER CA HA sing N N 182 SER C O doub N N 183 SER C OXT sing N N 184 SER CB OG sing N N 185 SER CB HB2 sing N N 186 SER CB HB3 sing N N 187 SER OG HG sing N N 188 SER OXT HXT sing N N 189 THR N CA sing N N 190 THR N H sing N N 191 THR N H2 sing N N 192 THR CA C sing N N 193 THR CA CB sing N N 194 THR CA HA sing N N 195 THR C O doub N N 196 THR C OXT sing N N 197 THR CB OG1 sing N N 198 THR CB CG2 sing N N 199 THR CB HB sing N N 200 THR OG1 HG1 sing N N 201 THR CG2 HG21 sing N N 202 THR CG2 HG22 sing N N 203 THR CG2 HG23 sing N N 204 THR OXT HXT sing N N 205 TYR N CA sing N N 206 TYR N H sing N N 207 TYR N H2 sing N N 208 TYR CA C sing N N 209 TYR CA CB sing N N 210 TYR CA HA sing N N 211 TYR C O doub N N 212 TYR C OXT sing N N 213 TYR CB CG sing N N 214 TYR CB HB2 sing N N 215 TYR CB HB3 sing N N 216 TYR CG CD1 doub Y N 217 TYR CG CD2 sing Y N 218 TYR CD1 CE1 sing Y N 219 TYR CD1 HD1 sing N N 220 TYR CD2 CE2 doub Y N 221 TYR CD2 HD2 sing N N 222 TYR CE1 CZ doub Y N 223 TYR CE1 HE1 sing N N 224 TYR CE2 CZ sing Y N 225 TYR CE2 HE2 sing N N 226 TYR CZ OH sing N N 227 TYR OH HH sing N N 228 TYR OXT HXT sing N N 229 VAL N CA sing N N 230 VAL N H sing N N 231 VAL N H2 sing N N 232 VAL CA C sing N N 233 VAL CA CB sing N N 234 VAL CA HA sing N N 235 VAL C O doub N N 236 VAL C OXT sing N N 237 VAL CB CG1 sing N N 238 VAL CB CG2 sing N N 239 VAL CB HB sing N N 240 VAL CG1 HG11 sing N N 241 VAL CG1 HG12 sing N N 242 VAL CG1 HG13 sing N N 243 VAL CG2 HG21 sing N N 244 VAL CG2 HG22 sing N N 245 VAL CG2 HG23 sing N N 246 VAL OXT HXT sing N N 247 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.02 mol/L Tris 'tris(hydroxymethyl)aminomethane' 1 2 0.1 mol/L NaCl 'sodium chloride' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'Aligned, non-dose-weighted micrographs were used to estimate the contrast transfer function (CTF) using CTFFIND4.1' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 45.85 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid PRK172 _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -3.38 _em_helical_entity.axial_rise_per_subunit 4.70 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ;Movie frames were gain-corrected, aligned, dose weighted and then summed into a single micrograph using MOTIONCOR2 (Zheng et al., 2017) ; # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 48 _em_image_recording.average_exposure_time 1.0 _em_image_recording.details 'Images were collected in movie-mode at 30 frames per second' _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 717 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Manually picked' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 187555 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.0 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 1.5.0.1243REL ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0236 ? 1 ? 14 'MODEL REFINEMENT' ? PHENIX dev-2919-000 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details ;Recombinant tau protein was induced into filaments by incubation with heparin at 37 C for 3 days. The filaments were pronase-treated before making Cryo-grids. ; _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_UP_A025_1013 1 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_U105184291 2 # _atom_sites.entry_id 6QJM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_