HEADER SIGNALING PROTEIN 24-JAN-19 6QJN TITLE CRYSTAL STRUCTURE OF THE THIRD PDZ DOMAIN OF PSD-95 PROTEIN D332G TITLE 2 MUTANT: SPACE GROUP I4122 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90,SAP90; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLG4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAT4 KEYWDS PDZ DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 3 24-JAN-24 6QJN 1 REMARK REVDAT 2 24-APR-19 6QJN 1 JRNL REVDAT 1 17-APR-19 6QJN 0 SPRSDE 17-APR-19 6QJN 5OIJ JRNL AUTH A.CAMARA-ARTIGAS,J.MURCIANO-CALLES,J.C.MARTINEZ JRNL TITL CONFORMATIONAL CHANGES IN THE THIRD PDZ DOMAIN OF THE JRNL TITL 2 NEURONAL POSTSYNAPTIC DENSITY PROTEIN 95. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 75 381 2019 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 30988255 JRNL DOI 10.1107/S2059798319001980 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 30028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8546 - 5.0178 0.96 1223 126 0.2010 0.1920 REMARK 3 2 5.0178 - 3.9934 0.95 1171 161 0.1642 0.1925 REMARK 3 3 3.9934 - 3.4917 0.93 1183 124 0.1834 0.1790 REMARK 3 4 3.4917 - 3.1739 0.96 1225 110 0.1935 0.2087 REMARK 3 5 3.1739 - 2.9472 0.97 1212 134 0.2039 0.2175 REMARK 3 6 2.9472 - 2.7739 0.97 1231 150 0.1997 0.2356 REMARK 3 7 2.7739 - 2.6353 0.96 1152 158 0.2169 0.2111 REMARK 3 8 2.6353 - 2.5208 0.96 1235 130 0.2126 0.2489 REMARK 3 9 2.5208 - 2.4240 0.98 1241 113 0.2124 0.2907 REMARK 3 10 2.4240 - 2.3405 0.99 1257 130 0.2125 0.2585 REMARK 3 11 2.3405 - 2.2674 0.99 1288 98 0.2065 0.2455 REMARK 3 12 2.2674 - 2.2027 0.98 1212 164 0.2214 0.2237 REMARK 3 13 2.2027 - 2.1447 1.00 1225 163 0.2166 0.2383 REMARK 3 14 2.1447 - 2.0925 0.99 1203 166 0.2285 0.2472 REMARK 3 15 2.0925 - 2.0450 0.97 1213 157 0.2222 0.2667 REMARK 3 16 2.0450 - 2.0015 0.98 1186 154 0.2321 0.2730 REMARK 3 17 2.0015 - 1.9615 0.99 1226 151 0.2282 0.2972 REMARK 3 18 1.9615 - 1.9245 0.99 1259 140 0.2480 0.2973 REMARK 3 19 1.9245 - 1.8902 1.00 1273 140 0.2359 0.2816 REMARK 3 20 1.8902 - 1.8581 1.00 1243 122 0.2592 0.3354 REMARK 3 21 1.8581 - 1.8282 1.00 1245 149 0.2683 0.3003 REMARK 3 22 1.8282 - 1.8001 1.00 1254 131 0.3117 0.3545 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6742 12.0461 2.7989 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.2240 REMARK 3 T33: 0.2084 T12: 0.0219 REMARK 3 T13: 0.0231 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 5.4862 L22: 5.8705 REMARK 3 L33: 7.2461 L12: 0.3771 REMARK 3 L13: -0.1267 L23: 2.2584 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: -0.5194 S13: 0.1201 REMARK 3 S21: -0.0146 S22: -0.1479 S23: -0.3250 REMARK 3 S31: -0.1006 S32: 0.5069 S33: -0.3039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6523 2.2291 -0.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.2431 REMARK 3 T33: 0.3132 T12: 0.0618 REMARK 3 T13: -0.0514 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 5.8636 L22: 2.1340 REMARK 3 L33: 2.3159 L12: -1.7523 REMARK 3 L13: -2.8593 L23: 0.4548 REMARK 3 S TENSOR REMARK 3 S11: 0.3324 S12: 0.1340 S13: -1.5311 REMARK 3 S21: -0.1739 S22: -0.2226 S23: 0.3237 REMARK 3 S31: 0.1883 S32: -0.4930 S33: 0.2611 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0640 5.6954 6.5272 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.2056 REMARK 3 T33: 0.1357 T12: 0.0299 REMARK 3 T13: -0.0086 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 3.5610 L22: 5.3467 REMARK 3 L33: 6.4248 L12: -0.9851 REMARK 3 L13: -1.7081 L23: 1.8909 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.4851 S13: -0.3021 REMARK 3 S21: 0.0656 S22: 0.0818 S23: 0.0918 REMARK 3 S31: 0.0355 S32: 0.1673 S33: -0.0241 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 357 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1797 14.0439 2.2117 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1834 REMARK 3 T33: 0.1225 T12: 0.0197 REMARK 3 T13: 0.0040 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 8.8892 L22: 4.5957 REMARK 3 L33: 4.1769 L12: -3.8303 REMARK 3 L13: 0.0517 L23: -1.0714 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: -0.1673 S13: -0.0071 REMARK 3 S21: 0.0386 S22: 0.0858 S23: 0.1635 REMARK 3 S31: 0.0835 S32: -0.2196 S33: -0.1350 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3515 10.9423 -1.5302 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.3039 REMARK 3 T33: 0.1871 T12: -0.0258 REMARK 3 T13: -0.0019 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.1792 L22: 3.9909 REMARK 3 L33: 1.0313 L12: -0.4776 REMARK 3 L13: -1.7805 L23: -0.2828 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.3764 S13: 0.0285 REMARK 3 S21: -0.0588 S22: -0.1548 S23: 0.2771 REMARK 3 S31: 0.2524 S32: -1.2485 S33: 0.1253 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5470 9.4205 18.2189 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.3703 REMARK 3 T33: 0.1337 T12: 0.0050 REMARK 3 T13: 0.0028 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 8.7913 L22: 7.3264 REMARK 3 L33: 7.3574 L12: 5.4752 REMARK 3 L13: -1.1791 L23: 1.5286 REMARK 3 S TENSOR REMARK 3 S11: 0.4241 S12: -0.5664 S13: 0.0577 REMARK 3 S21: 0.7698 S22: -0.2188 S23: -0.0895 REMARK 3 S31: -0.5639 S32: 0.6125 S33: -0.2003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7458 -9.6484 21.7138 REMARK 3 T TENSOR REMARK 3 T11: 0.4224 T22: 0.4264 REMARK 3 T33: 0.6187 T12: -0.1182 REMARK 3 T13: 0.0154 T23: 0.1462 REMARK 3 L TENSOR REMARK 3 L11: 3.6786 L22: 2.3460 REMARK 3 L33: 7.2048 L12: -2.7185 REMARK 3 L13: 0.7803 L23: -2.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.1823 S12: -1.2203 S13: -0.8389 REMARK 3 S21: 0.0138 S22: -0.4059 S23: -1.1426 REMARK 3 S31: 0.2827 S32: 0.6535 S33: 0.0795 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8983 -3.1062 14.1301 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.1879 REMARK 3 T33: 0.2847 T12: -0.0021 REMARK 3 T13: -0.0017 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 3.8660 L22: 3.4079 REMARK 3 L33: 0.9668 L12: -0.7303 REMARK 3 L13: -0.6990 L23: -1.0777 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.2668 S13: -0.6507 REMARK 3 S21: 0.0766 S22: -0.2587 S23: 0.1707 REMARK 3 S31: 0.1825 S32: 0.0180 S33: 0.2990 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 351 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7263 -6.4444 21.0618 REMARK 3 T TENSOR REMARK 3 T11: 0.4479 T22: 0.3880 REMARK 3 T33: 0.5964 T12: 0.0668 REMARK 3 T13: -0.1752 T23: 0.6061 REMARK 3 L TENSOR REMARK 3 L11: 4.6906 L22: 3.1111 REMARK 3 L33: 1.2713 L12: 1.3301 REMARK 3 L13: 0.1244 L23: 1.9091 REMARK 3 S TENSOR REMARK 3 S11: 0.2050 S12: -1.5900 S13: -1.0913 REMARK 3 S21: 0.9861 S22: -0.5217 S23: 0.0257 REMARK 3 S31: 0.8931 S32: 0.5881 S33: -0.7577 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 357 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6925 -13.6398 13.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.5067 T22: 0.3098 REMARK 3 T33: 0.7701 T12: -0.0421 REMARK 3 T13: 0.0309 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 4.7819 L22: 2.0551 REMARK 3 L33: 5.0606 L12: 2.9262 REMARK 3 L13: 0.8631 L23: 1.3151 REMARK 3 S TENSOR REMARK 3 S11: -0.3279 S12: -0.1434 S13: -1.9071 REMARK 3 S21: 0.2080 S22: 0.5121 S23: -0.6436 REMARK 3 S31: 1.6958 S32: 0.0081 S33: 0.3647 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 363 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1247 -16.8110 8.6042 REMARK 3 T TENSOR REMARK 3 T11: 0.6691 T22: 0.6341 REMARK 3 T33: 1.1521 T12: -0.2921 REMARK 3 T13: 0.0300 T23: -0.2651 REMARK 3 L TENSOR REMARK 3 L11: 3.2226 L22: 2.6902 REMARK 3 L33: 8.3226 L12: -2.5034 REMARK 3 L13: 0.4481 L23: -2.8614 REMARK 3 S TENSOR REMARK 3 S11: 0.5970 S12: 0.4219 S13: -2.0084 REMARK 3 S21: -0.8574 S22: 0.6963 S23: -0.4512 REMARK 3 S31: 0.8194 S32: -0.4109 S33: -0.8222 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3422 -8.9301 11.4209 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.6618 REMARK 3 T33: 0.6238 T12: -0.1569 REMARK 3 T13: -0.0726 T23: 0.1304 REMARK 3 L TENSOR REMARK 3 L11: 4.2032 L22: 2.2187 REMARK 3 L33: 4.3345 L12: -0.4508 REMARK 3 L13: -1.2893 L23: 1.8318 REMARK 3 S TENSOR REMARK 3 S11: -0.6761 S12: 1.8055 S13: -1.7096 REMARK 3 S21: -0.4565 S22: -0.6900 S23: 0.3397 REMARK 3 S31: 0.6583 S32: -0.2118 S33: 0.5179 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 393 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6374 -9.5055 11.2182 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 0.8003 REMARK 3 T33: 0.6479 T12: 0.2996 REMARK 3 T13: 0.0611 T23: 0.2439 REMARK 3 L TENSOR REMARK 3 L11: 5.4036 L22: 6.8545 REMARK 3 L33: 7.2770 L12: -4.5243 REMARK 3 L13: 3.0952 L23: -1.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.7585 S12: -0.4939 S13: -1.4491 REMARK 3 S21: -0.8788 S22: -0.9444 S23: -0.8039 REMARK 3 S31: 0.8454 S32: 0.6689 S33: 0.1436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 312 THROUGH 330 OR REMARK 3 RESID 333 THROUGH 403)) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 536 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1292100291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K82 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 20% 2-PROPANOL, REMARK 280 20% PEG 4000, 5% GLYCEROL, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 44.93550 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.40700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.20350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.93550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.61050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.61050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.93550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.20350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 44.93550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.40700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.93550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 42.40700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.93550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.61050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.20350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.93550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.20350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.61050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.93550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.93550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 42.40700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 300 REMARK 465 GLY A 301 REMARK 465 LEU A 302 REMARK 465 GLY A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 ASP A 306 REMARK 465 MET B 300 REMARK 465 GLY B 301 REMARK 465 LEU B 302 REMARK 465 GLY B 303 REMARK 465 GLU B 304 REMARK 465 GLU B 305 REMARK 465 ASP B 306 REMARK 465 ILE B 307 REMARK 465 PRO B 308 REMARK 465 ARG B 309 REMARK 465 GLU B 310 REMARK 465 PRO B 311 REMARK 465 GLY B 330 REMARK 465 GLU B 331 REMARK 465 GLY B 332 REMARK 465 GLY B 333 REMARK 465 GLU B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 320 36.38 -79.78 REMARK 500 THR A 321 2.16 -157.75 REMARK 500 PHE A 340 137.14 -171.16 REMARK 500 ASN A 363 -131.87 50.61 REMARK 500 LYS A 393 49.72 -148.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 6QJN A 302 403 UNP P78352 DLG4_HUMAN 302 403 DBREF 6QJN B 302 403 UNP P78352 DLG4_HUMAN 302 403 SEQADV 6QJN MET A 300 UNP P78352 INITIATING METHIONINE SEQADV 6QJN GLY A 301 UNP P78352 EXPRESSION TAG SEQADV 6QJN GLY A 332 UNP P78352 ASP 332 ENGINEERED MUTATION SEQADV 6QJN MET B 300 UNP P78352 INITIATING METHIONINE SEQADV 6QJN GLY B 301 UNP P78352 EXPRESSION TAG SEQADV 6QJN GLY B 332 UNP P78352 ASP 332 ENGINEERED MUTATION SEQRES 1 A 104 MET GLY LEU GLY GLU GLU ASP ILE PRO ARG GLU PRO ARG SEQRES 2 A 104 ARG ILE VAL ILE HIS ARG GLY SER THR GLY LEU GLY PHE SEQRES 3 A 104 ASN ILE VAL GLY GLY GLU GLY GLY GLU GLY ILE PHE ILE SEQRES 4 A 104 SER PHE ILE LEU ALA GLY GLY PRO ALA ASP LEU SER GLY SEQRES 5 A 104 GLU LEU ARG LYS GLY ASP GLN ILE LEU SER VAL ASN GLY SEQRES 6 A 104 VAL ASP LEU ARG ASN ALA SER HIS GLU GLN ALA ALA ILE SEQRES 7 A 104 ALA LEU LYS ASN ALA GLY GLN THR VAL THR ILE ILE ALA SEQRES 8 A 104 GLN TYR LYS PRO GLU GLU TYR SER ARG PHE GLU ALA LYS SEQRES 1 B 104 MET GLY LEU GLY GLU GLU ASP ILE PRO ARG GLU PRO ARG SEQRES 2 B 104 ARG ILE VAL ILE HIS ARG GLY SER THR GLY LEU GLY PHE SEQRES 3 B 104 ASN ILE VAL GLY GLY GLU GLY GLY GLU GLY ILE PHE ILE SEQRES 4 B 104 SER PHE ILE LEU ALA GLY GLY PRO ALA ASP LEU SER GLY SEQRES 5 B 104 GLU LEU ARG LYS GLY ASP GLN ILE LEU SER VAL ASN GLY SEQRES 6 B 104 VAL ASP LEU ARG ASN ALA SER HIS GLU GLN ALA ALA ILE SEQRES 7 B 104 ALA LEU LYS ASN ALA GLY GLN THR VAL THR ILE ILE ALA SEQRES 8 B 104 GLN TYR LYS PRO GLU GLU TYR SER ARG PHE GLU ALA LYS FORMUL 3 HOH *83(H2 O) HELIX 1 AA1 SER A 371 ASN A 381 1 11 HELIX 2 AA2 LYS A 393 SER A 398 1 6 HELIX 3 AA3 GLY B 345 GLY B 351 1 7 HELIX 4 AA4 SER B 371 ASN B 381 1 11 HELIX 5 AA5 LYS B 393 ARG B 399 1 7 SHEET 1 AA1 4 ARG A 312 HIS A 317 0 SHEET 2 AA1 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 AA1 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 AA1 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 AA2 2 PHE A 325 VAL A 328 0 SHEET 2 AA2 2 PHE A 337 ILE A 341 -1 O PHE A 337 N VAL A 328 SHEET 1 AA3 4 ARG B 313 HIS B 317 0 SHEET 2 AA3 4 THR B 385 TYR B 392 -1 O ILE B 388 N ILE B 314 SHEET 3 AA3 4 ASP B 357 VAL B 362 -1 N LEU B 360 O ILE B 389 SHEET 4 AA3 4 VAL B 365 ASP B 366 -1 O VAL B 365 N VAL B 362 SHEET 1 AA4 2 PHE B 325 VAL B 328 0 SHEET 2 AA4 2 PHE B 337 ILE B 341 -1 O PHE B 337 N VAL B 328 CRYST1 89.871 89.871 84.814 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011791 0.00000