data_6QJQ # _entry.id 6QJQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.302 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6QJQ WWPDB D_1292100295 EMDB EMD-4566 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4566 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6QJQ _pdbx_database_status.recvd_initial_deposition_date 2019-01-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, W.' 1 0000-0002-3011-9956 'Falcon, B.' 2 0000-0002-8176-2618 'Murzin, A.G.' 3 ? 'Fan, J.' 4 ? 'Crowther, R.A.' 5 ? 'Goedert, M.' 6 0000-0002-5214-7886 'Scheres, S.H.W.' 7 0000-0002-0462-6540 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer's and Pick's diseases. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.43584 _citation.pdbx_database_id_PubMed 30720432 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, W.' 1 ? primary 'Falcon, B.' 2 ? primary 'Murzin, A.G.' 3 ? primary 'Fan, J.' 4 ? primary 'Crowther, R.A.' 5 ? primary 'Goedert, M.' 6 ? primary 'Scheres, S.H.' 7 0000-0002-0462-6540 # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6QJQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1 _cell.length_a_esd ? _cell.length_b 1 _cell.length_b_esd ? _cell.length_c 1 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 2971.478 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGKVQIVYKPVDLSKVTSKCGSLGNIHH _entity_poly.pdbx_seq_one_letter_code_can GGKVQIVYKPVDLSKVTSKCGSLGNIHH _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 LYS n 1 4 VAL n 1 5 GLN n 1 6 ILE n 1 7 VAL n 1 8 TYR n 1 9 LYS n 1 10 PRO n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 SER n 1 15 LYS n 1 16 VAL n 1 17 THR n 1 18 SER n 1 19 LYS n 1 20 CYS n 1 21 GLY n 1 22 SER n 1 23 LEU n 1 24 GLY n 1 25 ASN n 1 26 ILE n 1 27 HIS n 1 28 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 28 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MAPT, MAPTL, MTBT1, TAU' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PRK172 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform P10636-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGKVQIVYKPVDLSKVTSKCGSLGNIHH _struct_ref.pdbx_align_begin 214 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6QJQ A 1 ? 28 ? P10636 214 ? 241 ? 272 330 2 1 6QJQ B 1 ? 28 ? P10636 214 ? 241 ? 272 330 3 1 6QJQ C 1 ? 28 ? P10636 214 ? 241 ? 272 330 4 1 6QJQ D 1 ? 28 ? P10636 214 ? 241 ? 272 330 5 1 6QJQ E 1 ? 28 ? P10636 214 ? 241 ? 272 330 6 1 6QJQ F 1 ? 28 ? P10636 214 ? 241 ? 272 330 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6QJQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6QJQ _struct.title 'Cryo-EM structure of heparin-induced 2N3R tau filaments' _struct.pdbx_descriptor 'Microtubule-associated protein tau' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6QJQ _struct_keywords.text 'Recombinant tau protein, heparin, filament, cross-beta structure, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 4 ? ILE B 6 ? VAL B 306 ILE B 308 AA1 2 VAL A 4 ? ILE A 6 ? VAL A 306 ILE A 308 AA1 3 VAL C 4 ? ILE C 6 ? VAL C 306 ILE C 308 AA2 1 VAL B 11 ? ASP B 12 ? VAL B 313 ASP B 314 AA2 2 VAL A 11 ? ASP A 12 ? VAL A 313 ASP A 314 AA2 3 VAL C 11 ? ASP C 12 ? VAL C 313 ASP C 314 AA3 1 LYS B 15 ? THR B 17 ? LYS B 317 THR B 319 AA3 2 LYS A 15 ? THR A 17 ? LYS A 317 THR A 319 AA3 3 LYS C 15 ? THR C 17 ? LYS C 317 THR C 319 AA4 1 CYS B 20 ? ILE B 26 ? CYS B 322 ILE B 328 AA4 2 CYS A 20 ? ILE A 26 ? CYS A 322 ILE A 328 AA4 3 CYS C 20 ? ILE C 26 ? CYS C 322 ILE C 328 AA5 1 VAL E 4 ? TYR E 8 ? VAL E 306 TYR E 310 AA5 2 VAL D 4 ? TYR D 8 ? VAL D 306 TYR D 310 AA5 3 VAL F 4 ? TYR F 8 ? VAL F 306 TYR F 310 AA6 1 VAL E 11 ? ASP E 12 ? VAL E 313 ASP E 314 AA6 2 VAL D 11 ? ASP D 12 ? VAL D 313 ASP D 314 AA6 3 VAL F 11 ? ASP F 12 ? VAL F 313 ASP F 314 AA7 1 LYS E 19 ? HIS E 27 ? LYS E 321 HIS E 329 AA7 2 LYS D 19 ? HIS D 27 ? LYS D 321 HIS D 329 AA7 3 LYS F 19 ? HIS F 27 ? LYS F 321 HIS F 329 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL B 4 ? O VAL B 306 N GLN A 5 ? N GLN A 307 AA1 2 3 N VAL A 4 ? N VAL A 306 O GLN C 5 ? O GLN C 307 AA2 1 2 O ASP B 12 ? O ASP B 314 N VAL A 11 ? N VAL A 313 AA2 2 3 N ASP A 12 ? N ASP A 314 O VAL C 11 ? O VAL C 313 AA3 1 2 O VAL B 16 ? O VAL B 318 N THR A 17 ? N THR A 319 AA3 2 3 N VAL A 16 ? N VAL A 318 O THR C 17 ? O THR C 319 AA4 1 2 O GLY B 24 ? O GLY B 326 N ASN A 25 ? N ASN A 327 AA4 2 3 N GLY A 24 ? N GLY A 326 O ASN C 25 ? O ASN C 327 AA5 1 2 O GLN E 5 ? O GLN E 307 N VAL D 4 ? N VAL D 306 AA5 2 3 N GLN D 5 ? N GLN D 307 O VAL F 4 ? O VAL F 306 AA6 1 2 O VAL E 11 ? O VAL E 313 N ASP D 12 ? N ASP D 314 AA6 2 3 N VAL D 11 ? N VAL D 313 O ASP F 12 ? O ASP F 314 AA7 1 2 O LEU E 23 ? O LEU E 325 N SER D 22 ? N SER D 324 AA7 2 3 N ILE D 26 ? N ILE D 328 O HIS F 27 ? O HIS F 329 # _atom_sites.entry_id 6QJQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 272 272 GLY GLY A . n A 1 2 GLY 2 273 273 GLY GLY A . n A 1 3 LYS 3 274 274 LYS LYS A . n A 1 4 VAL 4 306 306 VAL VAL A . n A 1 5 GLN 5 307 307 GLN GLN A . n A 1 6 ILE 6 308 308 ILE ILE A . n A 1 7 VAL 7 309 309 VAL VAL A . n A 1 8 TYR 8 310 310 TYR TYR A . n A 1 9 LYS 9 311 311 LYS LYS A . n A 1 10 PRO 10 312 312 PRO PRO A . n A 1 11 VAL 11 313 313 VAL VAL A . n A 1 12 ASP 12 314 314 ASP ASP A . n A 1 13 LEU 13 315 315 LEU LEU A . n A 1 14 SER 14 316 316 SER SER A . n A 1 15 LYS 15 317 317 LYS LYS A . n A 1 16 VAL 16 318 318 VAL VAL A . n A 1 17 THR 17 319 319 THR THR A . n A 1 18 SER 18 320 320 SER SER A . n A 1 19 LYS 19 321 321 LYS LYS A . n A 1 20 CYS 20 322 322 CYS CYS A . n A 1 21 GLY 21 323 323 GLY GLY A . n A 1 22 SER 22 324 324 SER SER A . n A 1 23 LEU 23 325 325 LEU LEU A . n A 1 24 GLY 24 326 326 GLY GLY A . n A 1 25 ASN 25 327 327 ASN ASN A . n A 1 26 ILE 26 328 328 ILE ILE A . n A 1 27 HIS 27 329 329 HIS HIS A . n A 1 28 HIS 28 330 330 HIS HIS A . n B 1 1 GLY 1 272 272 GLY GLY B . n B 1 2 GLY 2 273 273 GLY GLY B . n B 1 3 LYS 3 274 274 LYS LYS B . n B 1 4 VAL 4 306 306 VAL VAL B . n B 1 5 GLN 5 307 307 GLN GLN B . n B 1 6 ILE 6 308 308 ILE ILE B . n B 1 7 VAL 7 309 309 VAL VAL B . n B 1 8 TYR 8 310 310 TYR TYR B . n B 1 9 LYS 9 311 311 LYS LYS B . n B 1 10 PRO 10 312 312 PRO PRO B . n B 1 11 VAL 11 313 313 VAL VAL B . n B 1 12 ASP 12 314 314 ASP ASP B . n B 1 13 LEU 13 315 315 LEU LEU B . n B 1 14 SER 14 316 316 SER SER B . n B 1 15 LYS 15 317 317 LYS LYS B . n B 1 16 VAL 16 318 318 VAL VAL B . n B 1 17 THR 17 319 319 THR THR B . n B 1 18 SER 18 320 320 SER SER B . n B 1 19 LYS 19 321 321 LYS LYS B . n B 1 20 CYS 20 322 322 CYS CYS B . n B 1 21 GLY 21 323 323 GLY GLY B . n B 1 22 SER 22 324 324 SER SER B . n B 1 23 LEU 23 325 325 LEU LEU B . n B 1 24 GLY 24 326 326 GLY GLY B . n B 1 25 ASN 25 327 327 ASN ASN B . n B 1 26 ILE 26 328 328 ILE ILE B . n B 1 27 HIS 27 329 329 HIS HIS B . n B 1 28 HIS 28 330 330 HIS HIS B . n C 1 1 GLY 1 272 272 GLY GLY C . n C 1 2 GLY 2 273 273 GLY GLY C . n C 1 3 LYS 3 274 274 LYS LYS C . n C 1 4 VAL 4 306 306 VAL VAL C . n C 1 5 GLN 5 307 307 GLN GLN C . n C 1 6 ILE 6 308 308 ILE ILE C . n C 1 7 VAL 7 309 309 VAL VAL C . n C 1 8 TYR 8 310 310 TYR TYR C . n C 1 9 LYS 9 311 311 LYS LYS C . n C 1 10 PRO 10 312 312 PRO PRO C . n C 1 11 VAL 11 313 313 VAL VAL C . n C 1 12 ASP 12 314 314 ASP ASP C . n C 1 13 LEU 13 315 315 LEU LEU C . n C 1 14 SER 14 316 316 SER SER C . n C 1 15 LYS 15 317 317 LYS LYS C . n C 1 16 VAL 16 318 318 VAL VAL C . n C 1 17 THR 17 319 319 THR THR C . n C 1 18 SER 18 320 320 SER SER C . n C 1 19 LYS 19 321 321 LYS LYS C . n C 1 20 CYS 20 322 322 CYS CYS C . n C 1 21 GLY 21 323 323 GLY GLY C . n C 1 22 SER 22 324 324 SER SER C . n C 1 23 LEU 23 325 325 LEU LEU C . n C 1 24 GLY 24 326 326 GLY GLY C . n C 1 25 ASN 25 327 327 ASN ASN C . n C 1 26 ILE 26 328 328 ILE ILE C . n C 1 27 HIS 27 329 329 HIS HIS C . n C 1 28 HIS 28 330 330 HIS HIS C . n D 1 1 GLY 1 272 ? ? ? D . n D 1 2 GLY 2 273 ? ? ? D . n D 1 3 LYS 3 274 274 LYS LYS D . n D 1 4 VAL 4 306 306 VAL VAL D . n D 1 5 GLN 5 307 307 GLN GLN D . n D 1 6 ILE 6 308 308 ILE ILE D . n D 1 7 VAL 7 309 309 VAL VAL D . n D 1 8 TYR 8 310 310 TYR TYR D . n D 1 9 LYS 9 311 311 LYS LYS D . n D 1 10 PRO 10 312 312 PRO PRO D . n D 1 11 VAL 11 313 313 VAL VAL D . n D 1 12 ASP 12 314 314 ASP ASP D . n D 1 13 LEU 13 315 315 LEU LEU D . n D 1 14 SER 14 316 316 SER SER D . n D 1 15 LYS 15 317 317 LYS LYS D . n D 1 16 VAL 16 318 318 VAL VAL D . n D 1 17 THR 17 319 319 THR THR D . n D 1 18 SER 18 320 320 SER SER D . n D 1 19 LYS 19 321 321 LYS LYS D . n D 1 20 CYS 20 322 322 CYS CYS D . n D 1 21 GLY 21 323 323 GLY GLY D . n D 1 22 SER 22 324 324 SER SER D . n D 1 23 LEU 23 325 325 LEU LEU D . n D 1 24 GLY 24 326 326 GLY GLY D . n D 1 25 ASN 25 327 327 ASN ASN D . n D 1 26 ILE 26 328 328 ILE ILE D . n D 1 27 HIS 27 329 329 HIS HIS D . n D 1 28 HIS 28 330 330 HIS HIS D . n E 1 1 GLY 1 272 ? ? ? E . n E 1 2 GLY 2 273 ? ? ? E . n E 1 3 LYS 3 274 274 LYS LYS E . n E 1 4 VAL 4 306 306 VAL VAL E . n E 1 5 GLN 5 307 307 GLN GLN E . n E 1 6 ILE 6 308 308 ILE ILE E . n E 1 7 VAL 7 309 309 VAL VAL E . n E 1 8 TYR 8 310 310 TYR TYR E . n E 1 9 LYS 9 311 311 LYS LYS E . n E 1 10 PRO 10 312 312 PRO PRO E . n E 1 11 VAL 11 313 313 VAL VAL E . n E 1 12 ASP 12 314 314 ASP ASP E . n E 1 13 LEU 13 315 315 LEU LEU E . n E 1 14 SER 14 316 316 SER SER E . n E 1 15 LYS 15 317 317 LYS LYS E . n E 1 16 VAL 16 318 318 VAL VAL E . n E 1 17 THR 17 319 319 THR THR E . n E 1 18 SER 18 320 320 SER SER E . n E 1 19 LYS 19 321 321 LYS LYS E . n E 1 20 CYS 20 322 322 CYS CYS E . n E 1 21 GLY 21 323 323 GLY GLY E . n E 1 22 SER 22 324 324 SER SER E . n E 1 23 LEU 23 325 325 LEU LEU E . n E 1 24 GLY 24 326 326 GLY GLY E . n E 1 25 ASN 25 327 327 ASN ASN E . n E 1 26 ILE 26 328 328 ILE ILE E . n E 1 27 HIS 27 329 329 HIS HIS E . n E 1 28 HIS 28 330 330 HIS HIS E . n F 1 1 GLY 1 272 ? ? ? F . n F 1 2 GLY 2 273 ? ? ? F . n F 1 3 LYS 3 274 274 LYS LYS F . n F 1 4 VAL 4 306 306 VAL VAL F . n F 1 5 GLN 5 307 307 GLN GLN F . n F 1 6 ILE 6 308 308 ILE ILE F . n F 1 7 VAL 7 309 309 VAL VAL F . n F 1 8 TYR 8 310 310 TYR TYR F . n F 1 9 LYS 9 311 311 LYS LYS F . n F 1 10 PRO 10 312 312 PRO PRO F . n F 1 11 VAL 11 313 313 VAL VAL F . n F 1 12 ASP 12 314 314 ASP ASP F . n F 1 13 LEU 13 315 315 LEU LEU F . n F 1 14 SER 14 316 316 SER SER F . n F 1 15 LYS 15 317 317 LYS LYS F . n F 1 16 VAL 16 318 318 VAL VAL F . n F 1 17 THR 17 319 319 THR THR F . n F 1 18 SER 18 320 320 SER SER F . n F 1 19 LYS 19 321 321 LYS LYS F . n F 1 20 CYS 20 322 322 CYS CYS F . n F 1 21 GLY 21 323 323 GLY GLY F . n F 1 22 SER 22 324 324 SER SER F . n F 1 23 LEU 23 325 325 LEU LEU F . n F 1 24 GLY 24 326 326 GLY GLY F . n F 1 25 ASN 25 327 327 ASN ASN F . n F 1 26 ILE 26 328 328 ILE ILE F . n F 1 27 HIS 27 329 329 HIS HIS F . n F 1 28 HIS 28 330 330 HIS HIS F . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12710 ? 1 MORE -76 ? 1 'SSA (A^2)' 9800 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2019-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _em_3d_fitting.entry_id 6QJQ _em_3d_fitting.id 1 _em_3d_fitting.details ;A stack of three consecutive monomers was refined to preserve nearest-neighbour interactions for the middle chain. Side-chain clashes were detected using MOLPROBITY, and corrected by iterative cycles of real-space refinement in COOT and Fourier-space refinement in REFMAC and PHENIX. For each refined structure, separate model refinements were performed against a single half-map, and the resulting model was compared to the other half-map to confirm the absence of overfitting. ; _em_3d_fitting.overall_b_value 95.9 _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria 'Fourier shell correlation' _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6QJQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details 'For masked FSC calculation, phase randomisation was done at 6.1 A, where the FSC of the unmasked map was 0.85.' _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 149909 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM Tris, pH 7.4, 100mM NaCl' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Recombinant 2N3R tau protein was induced into filaments by adding heparin' _em_entity_assembly.name 'heparin-induced 2N3R tau filaments' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6QJQ _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 44 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 5.0 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-44 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6QJQ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'ZEMLIN TABLEAU' _em_imaging.c2_aperture_diameter 70.0 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2200 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot force: -12 ; Blot time: 4s' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6QJQ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6QJQ _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 309 ? ? -110.82 78.34 2 1 ASN A 327 ? ? 59.19 96.31 3 1 VAL B 309 ? ? -110.84 78.33 4 1 ASN B 327 ? ? 59.14 96.30 5 1 VAL C 309 ? ? -110.83 78.32 6 1 ASN C 327 ? ? 59.17 96.34 7 1 ASN D 327 ? ? 55.10 85.50 8 1 ASN E 327 ? ? 55.10 85.50 9 1 ASN F 327 ? ? 55.11 85.48 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D GLY 272 ? D GLY 1 2 1 Y 1 D GLY 273 ? D GLY 2 3 1 Y 1 E GLY 272 ? E GLY 1 4 1 Y 1 E GLY 273 ? E GLY 2 5 1 Y 1 F GLY 272 ? F GLY 1 6 1 Y 1 F GLY 273 ? F GLY 2 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.02 mol/L Tris 'tris(hydroxymethyl)aminomethane' 1 2 0.1 mol/L NaCl 'sodium chloride' # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'Aligned, non-dose-weighted micrographs were used to estimate the contrast transfer function (CTF) using CTFFIND4.1' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 42.6 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid pRK172 _em_entity_assembly_recombinant.strain 'BL21(DE3)' # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -1.05 _em_helical_entity.axial_rise_per_subunit 4.70 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ;Movie frames were gain-corrected, aligned, dose weighted and then summed into a single micrograph using MOTIONCOR2 (Zheng et al., 2017) ; # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.134 _em_image_recording.average_exposure_time 11 _em_image_recording.details 'Images were collected in movie-mode at 44 frames every 11 seconds' _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 2051 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Manually picked' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 788359 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.0 1 ? ? 2 'IMAGE ACQUISITION' ? EPU 1.10.0.77REL ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0236 ? 1 ? 14 'MODEL REFINEMENT' ? PHENIX dev-2919-000 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details 'Recombinant tau protein was induced into filaments by incubation with heparin at 37 degree celsius for 3 days' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_UP_A025_1013 1 'Medical Research Council (United Kingdom)' 'United Kingdom' MC_U105184291 2 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'assay for oligomerization' 'We used Thioflavin T fluorescence to check the kinetic assays of the filament assembly.' 2 1 microscopy 'We used negative-stain electron microscopy to check the morphology of assembled filaments.' #