HEADER SIGNALING PROTEIN 01-FEB-19 6QM3 TITLE CRYSTAL STRUCTURE OF A CALCIUM- AND SODIUM-BOUND MOUSE OLFACTOMEDIN-1 TITLE 2 DISULFIDE-LINKED DIMER OF THE OLFACTOMEDIN DOMAIN AND PART OF COILED TITLE 3 COIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOELIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEURONAL OLFACTOMEDIN-RELATED ER LOCALIZED PROTEIN, COMPND 5 OLFACTOMEDIN-1,PANCORTIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: OLFM1, NOE1, NOEL, NOEL1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 GNTI-/-; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PUPE; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUPE107.03 KEYWDS CALCIUM, BETA-PROPELLER, SECRETED, BRAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.PRONKER,H.G.VAN DEN HOEK,B.J.C.JANSSEN REVDAT 5 24-JAN-24 6QM3 1 HETSYN REVDAT 4 29-JUL-20 6QM3 1 COMPND JRNL REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 27-NOV-19 6QM3 1 JRNL REVDAT 2 20-NOV-19 6QM3 1 JRNL REVDAT 1 11-SEP-19 6QM3 0 JRNL AUTH M.F.PRONKER,H.VAN DEN HOEK,B.J.C.JANSSEN JRNL TITL DESIGN AND STRUCTURAL CHARACTERISATION OF OLFACTOMEDIN-1 JRNL TITL 2 VARIANTS AS TOOLS FOR FUNCTIONAL STUDIES. JRNL REF BMC MOL CELL BIOL V. 20 50 2019 JRNL REFN ESSN 2661-8850 JRNL PMID 31726976 JRNL DOI 10.1186/S12860-019-0232-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.343 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.3 REMARK 3 NUMBER OF REFLECTIONS : 27170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.096 REMARK 3 FREE R VALUE TEST SET COUNT : 1459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.3609 - 4.3087 0.98 4609 239 0.1384 0.1938 REMARK 3 2 4.3087 - 3.4199 0.99 4455 267 0.1476 0.1733 REMARK 3 3 3.4199 - 2.9876 0.99 4478 234 0.1920 0.2302 REMARK 3 4 2.9876 - 2.7145 0.95 4291 227 0.2340 0.2632 REMARK 3 5 2.7145 - 2.5199 0.69 3083 165 0.2680 0.3017 REMARK 3 6 2.5199 - 2.3713 0.45 2035 107 0.2767 0.2836 REMARK 3 7 2.3713 - 2.2525 0.34 1514 66 0.2717 0.3047 REMARK 3 8 2.2525 - 2.1545 0.27 1190 74 0.2642 0.2782 REMARK 3 9 2.1545 - 2.0715 0.20 888 53 0.2709 0.3719 REMARK 3 10 2.0715 - 2.0001 0.14 627 27 0.2636 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4582 REMARK 3 ANGLE : 0.852 6243 REMARK 3 CHIRALITY : 0.064 671 REMARK 3 PLANARITY : 0.004 794 REMARK 3 DIHEDRAL : 12.660 1629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5344 11.2621 71.9865 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.5129 REMARK 3 T33: 0.5528 T12: -0.1676 REMARK 3 T13: -0.0005 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8266 L22: 0.2127 REMARK 3 L33: 2.3193 L12: 0.4328 REMARK 3 L13: 0.2073 L23: -0.1238 REMARK 3 S TENSOR REMARK 3 S11: 0.4497 S12: -0.6976 S13: -0.2818 REMARK 3 S21: 0.2021 S22: -0.2334 S23: -0.2701 REMARK 3 S31: -0.0438 S32: 0.6911 S33: -0.2104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3758 9.0175 81.8478 REMARK 3 T TENSOR REMARK 3 T11: 0.3989 T22: 0.6654 REMARK 3 T33: 0.3133 T12: -0.1759 REMARK 3 T13: -0.0856 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: 2.7114 L22: 4.0250 REMARK 3 L33: 5.1500 L12: 2.9393 REMARK 3 L13: -0.4957 L23: 1.5801 REMARK 3 S TENSOR REMARK 3 S11: 0.3767 S12: -1.2775 S13: -0.6587 REMARK 3 S21: 0.6679 S22: -0.2106 S23: -0.5780 REMARK 3 S31: 0.2873 S32: -0.0182 S33: -0.1287 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7007 13.3000 83.8130 REMARK 3 T TENSOR REMARK 3 T11: 0.4791 T22: 0.8785 REMARK 3 T33: -0.0368 T12: -0.2393 REMARK 3 T13: 0.0156 T23: -0.0952 REMARK 3 L TENSOR REMARK 3 L11: 3.1092 L22: 4.4578 REMARK 3 L33: 4.3750 L12: -1.1981 REMARK 3 L13: -0.3140 L23: 2.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.1955 S12: -1.2688 S13: -0.7431 REMARK 3 S21: 1.2518 S22: 0.1156 S23: 0.0721 REMARK 3 S31: -0.0988 S32: -0.4709 S33: -0.1452 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4068 22.7890 81.9383 REMARK 3 T TENSOR REMARK 3 T11: 0.4522 T22: 0.8166 REMARK 3 T33: 0.1893 T12: -0.2626 REMARK 3 T13: 0.0705 T23: -0.3127 REMARK 3 L TENSOR REMARK 3 L11: 2.2971 L22: 2.6027 REMARK 3 L33: 4.0005 L12: 0.6036 REMARK 3 L13: 1.6857 L23: -0.2203 REMARK 3 S TENSOR REMARK 3 S11: 0.3529 S12: -1.8191 S13: 0.8567 REMARK 3 S21: 0.7243 S22: 0.0051 S23: 0.3570 REMARK 3 S31: -1.0822 S32: 0.0331 S33: 0.9025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1543 26.3811 69.9640 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.3067 REMARK 3 T33: 0.4509 T12: -0.1064 REMARK 3 T13: 0.0927 T23: -0.1222 REMARK 3 L TENSOR REMARK 3 L11: 2.2624 L22: 1.4588 REMARK 3 L33: 3.5690 L12: -0.1088 REMARK 3 L13: 0.3707 L23: 0.7732 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: -0.5070 S13: 1.0018 REMARK 3 S21: -0.0498 S22: -0.1443 S23: 0.0940 REMARK 3 S31: -1.0598 S32: -0.0398 S33: 0.2015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 389 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3485 20.5319 59.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.2518 REMARK 3 T33: 0.1887 T12: -0.0809 REMARK 3 T13: 0.0327 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 6.1933 L22: 3.7164 REMARK 3 L33: 3.4713 L12: -0.7377 REMARK 3 L13: -0.2031 L23: 0.3275 REMARK 3 S TENSOR REMARK 3 S11: 0.1942 S12: 0.5328 S13: 0.4218 REMARK 3 S21: -0.1427 S22: -0.0850 S23: -0.2215 REMARK 3 S31: -0.6278 S32: 0.3128 S33: -0.0308 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 438 THROUGH 478 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9325 7.1879 66.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.2453 REMARK 3 T33: 0.3760 T12: -0.0490 REMARK 3 T13: -0.0597 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.8679 L22: 3.2816 REMARK 3 L33: 4.3843 L12: 0.9286 REMARK 3 L13: -0.2673 L23: -0.5866 REMARK 3 S TENSOR REMARK 3 S11: 0.1756 S12: -0.1069 S13: -0.9801 REMARK 3 S21: 0.0278 S22: -0.2928 S23: -0.5412 REMARK 3 S31: 0.1205 S32: 0.4896 S33: 0.0769 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 212 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.4042 24.0904 68.4599 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.3218 REMARK 3 T33: 0.3337 T12: -0.1583 REMARK 3 T13: -0.0065 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 5.5069 L22: 1.6264 REMARK 3 L33: 3.5079 L12: 0.7699 REMARK 3 L13: 1.7803 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: 0.2995 S12: -0.7229 S13: -0.3045 REMARK 3 S21: 0.0823 S22: -0.2569 S23: -0.0494 REMARK 3 S31: 0.0878 S32: 0.0614 S33: 0.0554 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 346 THROUGH 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.0964 17.3661 54.3749 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.1713 REMARK 3 T33: 0.3849 T12: -0.1271 REMARK 3 T13: -0.0501 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 3.7839 L22: 3.8299 REMARK 3 L33: 4.5196 L12: -0.5363 REMARK 3 L13: 1.0366 L23: 0.7594 REMARK 3 S TENSOR REMARK 3 S11: 0.1817 S12: 0.1420 S13: -0.3132 REMARK 3 S21: -0.1407 S22: -0.1777 S23: -0.4016 REMARK 3 S31: 0.1136 S32: 0.1939 S33: 0.0559 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 438 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.5954 32.8581 58.0456 REMARK 3 T TENSOR REMARK 3 T11: 0.4726 T22: 0.1341 REMARK 3 T33: 0.3727 T12: -0.1361 REMARK 3 T13: -0.0572 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.8082 L22: 3.1379 REMARK 3 L33: 2.1274 L12: 2.3815 REMARK 3 L13: 0.9086 L23: -0.1018 REMARK 3 S TENSOR REMARK 3 S11: -0.3618 S12: -0.3326 S13: 0.7164 REMARK 3 S21: -0.2845 S22: 0.0571 S23: 0.3921 REMARK 3 S31: -0.9062 S32: -0.0017 S33: 0.0369 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 75.994 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M MG ACETATE, 30% PEG4000, 0.05 M REMARK 280 NA CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.35250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.48550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.35250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.48550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 211 REMARK 465 ALA A 480 REMARK 465 ALA A 481 REMARK 465 HIS A 482 REMARK 465 HIS A 483 REMARK 465 HIS A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 GLY B 211 REMARK 465 HIS B 478 REMARK 465 ALA B 479 REMARK 465 ALA B 480 REMARK 465 ALA B 481 REMARK 465 HIS B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 256 -175.43 -60.72 REMARK 500 ASP A 259 77.46 46.08 REMARK 500 SER A 353 40.58 -89.18 REMARK 500 ASP A 360 -159.96 -132.51 REMARK 500 ASP A 439 85.67 -155.61 REMARK 500 SER A 447 -5.49 68.56 REMARK 500 MET B 344 -63.30 -91.85 REMARK 500 ASP B 360 -161.71 -127.89 REMARK 500 SER B 447 -11.23 68.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 507 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 302 O REMARK 620 2 ASP A 356 OD1 84.2 REMARK 620 3 LEU A 357 O 68.5 99.4 REMARK 620 4 ASP A 453 OD2 151.3 123.9 98.2 REMARK 620 5 HOH A 619 O 93.2 105.8 147.2 85.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 356 OD2 REMARK 620 2 GLU A 404 OE1 88.5 REMARK 620 3 ALA A 405 O 97.3 80.6 REMARK 620 4 LEU A 452 O 171.1 82.6 81.6 REMARK 620 5 ASP A 453 OD1 113.6 154.1 108.3 75.0 REMARK 620 6 HOH A 616 O 96.7 78.4 154.4 81.3 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 356 OD2 REMARK 620 2 GLU B 404 OE1 87.7 REMARK 620 3 ALA B 405 O 95.1 81.5 REMARK 620 4 LEU B 452 O 171.2 84.3 87.1 REMARK 620 5 HOH B 645 O 108.3 163.5 92.8 80.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 356 OD1 REMARK 620 2 LEU B 357 O 91.2 REMARK 620 3 ASP B 453 OD1 104.1 157.5 REMARK 620 4 ASP B 453 OD2 146.4 116.3 44.2 REMARK 620 5 HOH B 621 O 98.1 139.0 55.8 74.2 REMARK 620 N 1 2 3 4 DBREF 6QM3 A 212 477 UNP O88998 NOE1_MOUSE 212 477 DBREF 6QM3 B 212 477 UNP O88998 NOE1_MOUSE 212 477 SEQADV 6QM3 GLY A 211 UNP O88998 EXPRESSION TAG SEQADV 6QM3 THR A 329 UNP O88998 ALA 329 CONFLICT SEQADV 6QM3 HIS A 478 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA A 479 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA A 480 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA A 481 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 482 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 483 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 484 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 485 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 486 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS A 487 UNP O88998 EXPRESSION TAG SEQADV 6QM3 GLY B 211 UNP O88998 EXPRESSION TAG SEQADV 6QM3 THR B 329 UNP O88998 ALA 329 CONFLICT SEQADV 6QM3 HIS B 478 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA B 479 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA B 480 UNP O88998 EXPRESSION TAG SEQADV 6QM3 ALA B 481 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 482 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 483 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 484 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 485 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 486 UNP O88998 EXPRESSION TAG SEQADV 6QM3 HIS B 487 UNP O88998 EXPRESSION TAG SEQRES 1 A 277 GLY SER ASN LEU GLU GLU ARG LEU ARG ALA CYS MET GLN SEQRES 2 A 277 LYS LEU ALA CYS GLY LYS LEU THR GLY ILE SER ASP PRO SEQRES 3 A 277 VAL THR VAL LYS THR SER GLY SER ARG PHE GLY SER TRP SEQRES 4 A 277 MET THR ASP PRO LEU ALA PRO GLU GLY ASP ASN ARG VAL SEQRES 5 A 277 TRP TYR MET ASP GLY TYR HIS ASN ASN ARG PHE VAL ARG SEQRES 6 A 277 GLU TYR LYS SER MET VAL ASP PHE MET ASN THR ASP ASN SEQRES 7 A 277 PHE THR SER HIS ARG LEU PRO HIS PRO TRP SER GLY THR SEQRES 8 A 277 GLY GLN VAL VAL TYR ASN GLY SER ILE TYR PHE ASN LYS SEQRES 9 A 277 PHE GLN SER HIS ILE ILE ILE ARG PHE ASP LEU LYS THR SEQRES 10 A 277 GLU THR ILE LEU LYS THR ARG SER LEU ASP TYR ALA GLY SEQRES 11 A 277 TYR ASN ASN MET TYR HIS TYR ALA TRP GLY GLY HIS SER SEQRES 12 A 277 ASP ILE ASP LEU MET VAL ASP GLU ASN GLY LEU TRP ALA SEQRES 13 A 277 VAL TYR ALA THR ASN GLN ASN ALA GLY ASN ILE VAL ILE SEQRES 14 A 277 SER LYS LEU ASP PRO VAL SER LEU GLN ILE LEU GLN THR SEQRES 15 A 277 TRP ASN THR SER TYR PRO LYS ARG SER ALA GLY GLU ALA SEQRES 16 A 277 PHE ILE ILE CYS GLY THR LEU TYR VAL THR ASN GLY TYR SEQRES 17 A 277 SER GLY GLY THR LYS VAL HIS TYR ALA TYR GLN THR ASN SEQRES 18 A 277 ALA SER THR TYR GLU TYR ILE ASP ILE PRO PHE GLN ASN SEQRES 19 A 277 LYS TYR SER HIS ILE SER MET LEU ASP TYR ASN PRO LYS SEQRES 20 A 277 ASP ARG ALA LEU TYR ALA TRP ASN ASN GLY HIS GLN THR SEQRES 21 A 277 LEU TYR ASN VAL THR LEU PHE HIS ALA ALA ALA HIS HIS SEQRES 22 A 277 HIS HIS HIS HIS SEQRES 1 B 277 GLY SER ASN LEU GLU GLU ARG LEU ARG ALA CYS MET GLN SEQRES 2 B 277 LYS LEU ALA CYS GLY LYS LEU THR GLY ILE SER ASP PRO SEQRES 3 B 277 VAL THR VAL LYS THR SER GLY SER ARG PHE GLY SER TRP SEQRES 4 B 277 MET THR ASP PRO LEU ALA PRO GLU GLY ASP ASN ARG VAL SEQRES 5 B 277 TRP TYR MET ASP GLY TYR HIS ASN ASN ARG PHE VAL ARG SEQRES 6 B 277 GLU TYR LYS SER MET VAL ASP PHE MET ASN THR ASP ASN SEQRES 7 B 277 PHE THR SER HIS ARG LEU PRO HIS PRO TRP SER GLY THR SEQRES 8 B 277 GLY GLN VAL VAL TYR ASN GLY SER ILE TYR PHE ASN LYS SEQRES 9 B 277 PHE GLN SER HIS ILE ILE ILE ARG PHE ASP LEU LYS THR SEQRES 10 B 277 GLU THR ILE LEU LYS THR ARG SER LEU ASP TYR ALA GLY SEQRES 11 B 277 TYR ASN ASN MET TYR HIS TYR ALA TRP GLY GLY HIS SER SEQRES 12 B 277 ASP ILE ASP LEU MET VAL ASP GLU ASN GLY LEU TRP ALA SEQRES 13 B 277 VAL TYR ALA THR ASN GLN ASN ALA GLY ASN ILE VAL ILE SEQRES 14 B 277 SER LYS LEU ASP PRO VAL SER LEU GLN ILE LEU GLN THR SEQRES 15 B 277 TRP ASN THR SER TYR PRO LYS ARG SER ALA GLY GLU ALA SEQRES 16 B 277 PHE ILE ILE CYS GLY THR LEU TYR VAL THR ASN GLY TYR SEQRES 17 B 277 SER GLY GLY THR LYS VAL HIS TYR ALA TYR GLN THR ASN SEQRES 18 B 277 ALA SER THR TYR GLU TYR ILE ASP ILE PRO PHE GLN ASN SEQRES 19 B 277 LYS TYR SER HIS ILE SER MET LEU ASP TYR ASN PRO LYS SEQRES 20 B 277 ASP ARG ALA LEU TYR ALA TRP ASN ASN GLY HIS GLN THR SEQRES 21 B 277 LEU TYR ASN VAL THR LEU PHE HIS ALA ALA ALA HIS HIS SEQRES 22 B 277 HIS HIS HIS HIS HET NAG A 501 14 HET NAG A 502 14 HET NAG A 503 14 HET NAG A 504 14 HET CAC A 505 5 HET CA A 506 1 HET NA A 507 1 HET ACT A 508 4 HET ACT A 509 4 HET NAG B 501 14 HET NAG B 502 14 HET NAG B 503 14 HET NAG B 504 14 HET CA B 505 1 HET NA B 506 1 HET ACT B 507 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CAC CACODYLATE ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN CAC DIMETHYLARSINATE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 7 CAC C2 H6 AS O2 1- FORMUL 8 CA 2(CA 2+) FORMUL 9 NA 2(NA 1+) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 19 HOH *99(H2 O) HELIX 1 AA1 SER A 212 ALA A 226 1 15 HELIX 2 AA2 SER A 279 THR A 286 1 8 HELIX 3 AA3 ASN A 371 ALA A 374 5 4 HELIX 4 AA4 ARG A 400 ALA A 402 5 3 HELIX 5 AA5 ASN B 213 ALA B 226 1 14 HELIX 6 AA6 SER B 279 THR B 286 1 8 HELIX 7 AA7 ARG B 400 ALA B 402 5 3 SHEET 1 AA1 3 LEU A 230 ILE A 233 0 SHEET 2 AA1 3 HIS A 468 LEU A 476 -1 O THR A 475 N GLY A 232 SHEET 3 AA1 3 VAL A 237 THR A 241 -1 N LYS A 240 O GLN A 469 SHEET 1 AA2 4 LEU A 230 ILE A 233 0 SHEET 2 AA2 4 HIS A 468 LEU A 476 -1 O THR A 475 N GLY A 232 SHEET 3 AA2 4 ALA A 460 ASN A 465 -1 N LEU A 461 O TYR A 472 SHEET 4 AA2 4 ILE A 449 ASN A 455 -1 N ASP A 453 O TYR A 462 SHEET 1 AA3 4 GLY A 247 THR A 251 0 SHEET 2 AA3 4 VAL A 262 ASP A 266 -1 O TRP A 263 N MET A 250 SHEET 3 AA3 4 PHE A 273 TYR A 277 -1 O ARG A 275 N TYR A 264 SHEET 4 AA3 4 THR A 290 ARG A 293 -1 O HIS A 292 N VAL A 274 SHEET 1 AA4 4 VAL A 304 TYR A 306 0 SHEET 2 AA4 4 SER A 309 ASN A 313 -1 O TYR A 311 N VAL A 304 SHEET 3 AA4 4 ILE A 319 ASP A 324 -1 O PHE A 323 N ILE A 310 SHEET 4 AA4 4 THR A 329 SER A 335 -1 O ARG A 334 N ILE A 320 SHEET 1 AA5 4 ASP A 356 ASP A 360 0 SHEET 2 AA5 4 GLY A 363 ALA A 369 -1 O TRP A 365 N MET A 358 SHEET 3 AA5 4 ASN A 376 LEU A 382 -1 O VAL A 378 N TYR A 368 SHEET 4 AA5 4 ILE A 389 PRO A 398 -1 O LEU A 390 N LYS A 381 SHEET 1 AA6 4 ALA A 405 ILE A 408 0 SHEET 2 AA6 4 THR A 411 THR A 415 -1 O TYR A 413 N PHE A 406 SHEET 3 AA6 4 LYS A 423 GLN A 429 -1 O TYR A 428 N LEU A 412 SHEET 4 AA6 4 THR A 434 PRO A 441 -1 O ILE A 440 N VAL A 424 SHEET 1 AA7 3 LEU B 230 ILE B 233 0 SHEET 2 AA7 3 HIS B 468 LEU B 476 -1 O THR B 475 N THR B 231 SHEET 3 AA7 3 VAL B 237 THR B 241 -1 N LYS B 240 O GLN B 469 SHEET 1 AA8 4 LEU B 230 ILE B 233 0 SHEET 2 AA8 4 HIS B 468 LEU B 476 -1 O THR B 475 N THR B 231 SHEET 3 AA8 4 ALA B 460 ASN B 465 -1 N ASN B 465 O HIS B 468 SHEET 4 AA8 4 ILE B 449 ASN B 455 -1 N ASP B 453 O TYR B 462 SHEET 1 AA9 4 GLY B 247 THR B 251 0 SHEET 2 AA9 4 VAL B 262 ASP B 266 -1 O TRP B 263 N MET B 250 SHEET 3 AA9 4 PHE B 273 TYR B 277 -1 O TYR B 277 N VAL B 262 SHEET 4 AA9 4 PHE B 289 ARG B 293 -1 O HIS B 292 N VAL B 274 SHEET 1 AB1 4 VAL B 304 TYR B 306 0 SHEET 2 AB1 4 SER B 309 ASN B 313 -1 O TYR B 311 N VAL B 304 SHEET 3 AB1 4 ILE B 319 ASP B 324 -1 O PHE B 323 N ILE B 310 SHEET 4 AB1 4 THR B 329 SER B 335 -1 O THR B 329 N ASP B 324 SHEET 1 AB2 4 ASP B 356 ASP B 360 0 SHEET 2 AB2 4 GLY B 363 ALA B 369 -1 O TRP B 365 N MET B 358 SHEET 3 AB2 4 ASN B 376 LEU B 382 -1 O VAL B 378 N TYR B 368 SHEET 4 AB2 4 ILE B 389 PRO B 398 -1 O TYR B 397 N ILE B 377 SHEET 1 AB3 4 ALA B 405 ILE B 408 0 SHEET 2 AB3 4 THR B 411 THR B 415 -1 O TYR B 413 N PHE B 406 SHEET 3 AB3 4 LYS B 423 GLN B 429 -1 O TYR B 428 N LEU B 412 SHEET 4 AB3 4 TYR B 435 PRO B 441 -1 O GLU B 436 N ALA B 427 SSBOND 1 CYS A 221 CYS B 221 1555 1555 2.05 SSBOND 2 CYS A 227 CYS A 409 1555 1555 2.05 SSBOND 3 CYS B 227 CYS B 409 1555 1555 2.04 LINK ND2 ASN A 288 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 307 C1 NAG A 502 1555 1555 1.44 LINK ND2 ASN A 394 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 473 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN B 288 C1 NAG B 501 1555 1555 1.43 LINK ND2 ASN B 307 C1 NAG B 502 1555 1555 1.45 LINK ND2 ASN B 394 C1 NAG B 503 1555 1555 1.44 LINK ND2 ASN B 473 C1 NAG B 504 1555 1555 1.43 LINK O GLY A 302 NA NA A 507 1555 1555 3.07 LINK OD2 ASP A 356 CA CA A 506 1555 1555 2.46 LINK OD1 ASP A 356 NA NA A 507 1555 1555 2.47 LINK O LEU A 357 NA NA A 507 1555 1555 2.29 LINK OE1 GLU A 404 CA CA A 506 1555 1555 2.37 LINK O ALA A 405 CA CA A 506 1555 1555 2.40 LINK O LEU A 452 CA CA A 506 1555 1555 2.36 LINK OD1 ASP A 453 CA CA A 506 1555 1555 2.30 LINK OD2 ASP A 453 NA NA A 507 1555 1555 2.35 LINK CA CA A 506 O HOH A 616 1555 1555 2.66 LINK NA NA A 507 O HOH A 619 1555 1555 2.32 LINK OD2 ASP B 356 CA CA B 505 1555 1555 2.56 LINK OD1 ASP B 356 NA NA B 506 1555 1555 2.71 LINK O LEU B 357 NA NA B 506 1555 1555 2.30 LINK OE1 GLU B 404 CA CA B 505 1555 1555 2.93 LINK O ALA B 405 CA CA B 505 1555 1555 2.62 LINK O LEU B 452 CA CA B 505 1555 1555 2.65 LINK OD1 ASP B 453 NA NA B 506 1555 1555 3.07 LINK OD2 ASP B 453 NA NA B 506 1555 1555 2.65 LINK CA CA B 505 O HOH B 645 1555 1555 2.32 LINK NA NA B 506 O HOH B 621 1555 1555 2.67 CRYST1 160.705 46.971 104.952 90.00 117.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006223 0.000000 0.003230 0.00000 SCALE2 0.000000 0.021290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010736 0.00000