HEADER TRANSPORT PROTEIN 08-FEB-19 6QMU TITLE A TETRAHEDRAL BORONIC ACID DIESTER FORMED BY A NON-NATURAL AMINO ACID TITLE 2 IN THE LIGAND POCKET OF AN ENGINEERED LIPOCALIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NGAL,25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF MMP-9, COMPND 5 LIPOCALIN-2,ONCOGENE 24P3,SIDEROCALIN,P25; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 179-188 CORRESPOND TO THE STREP-TAG, WHICH COMPND 9 WAS USED FOR AFFINITY PURIFICATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2, HNL, NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-BARREL, P-BORONOPHENYLALANINE, LIPOCALIN, STREP-TAG, SUGAR, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SKERRA,A.EICHINGER REVDAT 4 24-JAN-24 6QMU 1 REMARK LINK REVDAT 3 04-MAR-20 6QMU 1 JRNL REVDAT 2 20-NOV-19 6QMU 1 JRNL REVDAT 1 28-AUG-19 6QMU 0 JRNL AUTH C.A.SOMMER,A.EICHINGER,A.SKERRA JRNL TITL A TETRAHEDRAL BORONIC ACID DIESTER FORMED BY AN UNNATURAL JRNL TITL 2 AMINO ACID IN THE LIGAND POCKET OF AN ENGINEERED LIPOCALIN. JRNL REF CHEMBIOCHEM V. 21 469 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 31390134 JRNL DOI 10.1002/CBIC.201900405 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1875 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.96000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3154 ; 0.009 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2766 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4288 ; 1.258 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6492 ; 0.835 ; 1.643 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 7.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.907 ;23.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 524 ;16.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3646 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 188 B 5 188 5805 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0243 -13.1655 10.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0977 REMARK 3 T33: 0.0522 T12: 0.0141 REMARK 3 T13: -0.0320 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.0485 L22: 0.5324 REMARK 3 L33: 0.2852 L12: 0.2293 REMARK 3 L13: 0.0731 L23: 0.3795 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0603 S13: -0.0430 REMARK 3 S21: 0.0029 S22: 0.0589 S23: -0.0058 REMARK 3 S31: 0.0028 S32: 0.0256 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 188 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0509 -12.9301 23.8806 REMARK 3 T TENSOR REMARK 3 T11: 0.0635 T22: 0.0768 REMARK 3 T33: 0.0456 T12: 0.0023 REMARK 3 T13: -0.0156 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.9618 L22: 0.8494 REMARK 3 L33: 1.1002 L12: -0.1328 REMARK 3 L13: -0.7144 L23: 0.2822 REMARK 3 S TENSOR REMARK 3 S11: 0.2021 S12: -0.0469 S13: 0.0418 REMARK 3 S21: -0.0038 S22: -0.0165 S23: -0.0698 REMARK 3 S31: -0.0528 S32: -0.0112 S33: -0.1856 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6QMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.975 REMARK 200 RESOLUTION RANGE LOW (A) : 66.889 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5MHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.24300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.24300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 73 -115.97 47.41 REMARK 500 TYR A 115 -39.99 75.25 REMARK 500 GLN A 117 -55.04 -131.50 REMARK 500 CYS A 175 -45.43 75.37 REMARK 500 SER A 179 7.38 155.97 REMARK 500 TRP A 181 69.85 35.45 REMARK 500 TYR B 115 -39.55 77.60 REMARK 500 GLN B 117 -56.01 -133.84 REMARK 500 GLN B 128 51.50 40.00 REMARK 500 CYS B 175 -43.96 78.54 REMARK 500 SER B 179 -16.90 -176.87 REMARK 500 TRP B 181 -122.85 54.63 REMARK 500 SER B 182 109.79 -164.70 REMARK 500 GLU B 187 91.23 -31.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 109 0.08 SIDE CHAIN REMARK 500 ARG A 130 0.09 SIDE CHAIN REMARK 500 ARG B 130 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ZCQ A 201 and 7N8 A 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ZCQ A 201 and 7N8 A 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY B 35 and 7N8 B REMARK 800 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide 7N8 B 36 and ALA B REMARK 800 37 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ZCQ B 201 and 7N8 B 36 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues ZCQ B 201 and 7N8 B 36 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5MHH RELATED DB: PDB REMARK 900 SAME POLYPEPETIDE, UNCOMPLEXED DBREF 6QMU A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 6QMU B 1 178 UNP P80188 NGAL_HUMAN 21 198 SEQADV 6QMU HIS A 28 UNP P80188 GLN 48 ENGINEERED MUTATION SEQADV 6QMU 7N8 A 36 UNP P80188 LEU 56 ENGINEERED MUTATION SEQADV 6QMU PHE A 52 UNP P80188 TYR 72 ENGINEERED MUTATION SEQADV 6QMU SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 6QMU TRP A 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 6QMU ASN A 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQADV 6QMU SER A 179 UNP P80188 EXPRESSION TAG SEQADV 6QMU ALA A 180 UNP P80188 EXPRESSION TAG SEQADV 6QMU TRP A 181 UNP P80188 EXPRESSION TAG SEQADV 6QMU SER A 182 UNP P80188 EXPRESSION TAG SEQADV 6QMU HIS A 183 UNP P80188 EXPRESSION TAG SEQADV 6QMU PRO A 184 UNP P80188 EXPRESSION TAG SEQADV 6QMU GLN A 185 UNP P80188 EXPRESSION TAG SEQADV 6QMU PHE A 186 UNP P80188 EXPRESSION TAG SEQADV 6QMU GLU A 187 UNP P80188 EXPRESSION TAG SEQADV 6QMU LYS A 188 UNP P80188 EXPRESSION TAG SEQADV 6QMU HIS B 28 UNP P80188 GLN 48 ENGINEERED MUTATION SEQADV 6QMU 7N8 B 36 UNP P80188 LEU 56 ENGINEERED MUTATION SEQADV 6QMU PHE B 52 UNP P80188 TYR 72 ENGINEERED MUTATION SEQADV 6QMU SER B 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 6QMU TRP B 125 UNP P80188 LYS 145 ENGINEERED MUTATION SEQADV 6QMU ASN B 134 UNP P80188 LYS 154 ENGINEERED MUTATION SEQADV 6QMU SER B 179 UNP P80188 EXPRESSION TAG SEQADV 6QMU ALA B 180 UNP P80188 EXPRESSION TAG SEQADV 6QMU TRP B 181 UNP P80188 EXPRESSION TAG SEQADV 6QMU SER B 182 UNP P80188 EXPRESSION TAG SEQADV 6QMU HIS B 183 UNP P80188 EXPRESSION TAG SEQADV 6QMU PRO B 184 UNP P80188 EXPRESSION TAG SEQADV 6QMU GLN B 185 UNP P80188 EXPRESSION TAG SEQADV 6QMU PHE B 186 UNP P80188 EXPRESSION TAG SEQADV 6QMU GLU B 187 UNP P80188 EXPRESSION TAG SEQADV 6QMU LYS B 188 UNP P80188 EXPRESSION TAG SEQRES 1 A 188 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 A 188 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 A 188 PHE HIS GLY LYS TRP TYR VAL VAL GLY 7N8 ALA GLY ASN SEQRES 4 A 188 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET PHE SEQRES 5 A 188 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 A 188 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 A 188 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 A 188 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 A 188 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 A 188 HIS ALA MET VAL PHE PHE LYS TRP VAL SER GLN ASN ARG SEQRES 11 A 188 GLU TYR PHE ASN ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 A 188 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 A 188 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 A 188 VAL PRO ILE ASP GLN CYS ILE ASP GLY SER ALA TRP SER SEQRES 15 A 188 HIS PRO GLN PHE GLU LYS SEQRES 1 B 188 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 B 188 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 B 188 PHE HIS GLY LYS TRP TYR VAL VAL GLY 7N8 ALA GLY ASN SEQRES 4 B 188 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET PHE SEQRES 5 B 188 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 B 188 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 B 188 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 B 188 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 B 188 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 B 188 HIS ALA MET VAL PHE PHE LYS TRP VAL SER GLN ASN ARG SEQRES 11 B 188 GLU TYR PHE ASN ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 B 188 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 B 188 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 B 188 VAL PRO ILE ASP GLN CYS ILE ASP GLY SER ALA TRP SER SEQRES 15 B 188 HIS PRO GLN PHE GLU LYS HET 7N8 A 36 14 HET 7N8 B 36 14 HET ZCQ A 201 10 HET ZCQ B 201 10 HETNAM 7N8 4-BORONO-L-PHENYLALANINE HETNAM ZCQ 3-NITROPHENOL FORMUL 1 7N8 2(C9 H12 B N O4) FORMUL 3 ZCQ 2(C6 H5 N O3) FORMUL 5 HOH *96(H2 O) HELIX 1 AA1 PRO A 12 VAL A 16 5 5 HELIX 2 AA2 ASN A 96 TYR A 100 5 5 HELIX 3 AA3 THR A 145 LEU A 159 1 15 HELIX 4 AA4 PRO A 162 ASN A 164 5 3 HELIX 5 AA5 PRO B 12 VAL B 16 5 5 HELIX 6 AA6 ASN B 96 TYR B 100 5 5 HELIX 7 AA7 THR B 145 LEU B 159 1 15 HELIX 8 AA8 PRO B 162 ASN B 164 5 3 SHEET 1 AA110 ILE A 166 VAL A 167 0 SHEET 2 AA110 GLY A 29 GLY A 38 -1 N 7N8 A 36 O VAL A 167 SHEET 3 AA110 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 AA110 HIS A 118 SER A 127 -1 N TRP A 125 O TYR A 132 SHEET 5 AA110 LEU A 103 THR A 113 -1 N ARG A 109 O PHE A 122 SHEET 6 AA110 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 AA110 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 AA110 TYR A 64 ARG A 72 -1 N VAL A 66 O ARG A 81 SHEET 9 AA110 ALA A 53 LEU A 58 -1 N ALA A 53 O VAL A 69 SHEET 10 AA110 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 AA210 ILE B 166 VAL B 167 0 SHEET 2 AA210 GLY B 29 GLY B 38 -1 N 7N8 B 36 O VAL B 167 SHEET 3 AA210 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 4 AA210 HIS B 118 SER B 127 -1 N TRP B 125 O TYR B 132 SHEET 5 AA210 LEU B 103 THR B 113 -1 N ARG B 109 O PHE B 122 SHEET 6 AA210 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 AA210 LYS B 75 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 AA210 TYR B 64 ARG B 72 -1 N LEU B 70 O ASP B 77 SHEET 9 AA210 ALA B 53 LEU B 58 -1 N ALA B 53 O VAL B 69 SHEET 10 AA210 GLY B 29 GLY B 38 -1 N GLY B 29 O TYR B 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.06 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.02 LINK C GLY A 35 N 7N8 A 36 1555 1555 1.34 LINK C 7N8 A 36 N ALA A 37 1555 1555 1.33 LINK BZ 7N8 A 36 O1 ZCQ A 201 1555 1555 1.51 LINK OB2 7N8 A 36 C6 ZCQ A 201 1555 1555 1.37 LINK C GLY B 35 N 7N8 B 36 1555 1555 1.34 LINK C 7N8 B 36 N ALA B 37 1555 1555 1.33 LINK BZ 7N8 B 36 O1 ZCQ B 201 1555 1555 1.50 LINK OB2 7N8 B 36 C6 ZCQ B 201 1555 1555 1.38 SITE 1 AC1 17 GLY A 35 ALA A 37 ILE A 41 PHE A 52 SITE 2 AC1 17 SER A 68 TRP A 79 ARG A 81 TRP A 125 SITE 3 AC1 17 ASN A 134 ILE A 135 PHE A 152 VAL A 167 SITE 4 AC1 17 TRP A 181 SER A 182 HOH A 318 HOH A 332 SITE 5 AC1 17 HOH A 334 SITE 1 AC2 17 GLY A 35 ALA A 37 ILE A 41 PHE A 52 SITE 2 AC2 17 SER A 68 TRP A 79 ARG A 81 TRP A 125 SITE 3 AC2 17 ASN A 134 ILE A 135 PHE A 152 VAL A 167 SITE 4 AC2 17 TRP A 181 SER A 182 HOH A 318 HOH A 332 SITE 5 AC2 17 HOH A 334 SITE 1 AC3 13 VAL B 33 VAL B 34 ALA B 37 ILE B 41 SITE 2 AC3 13 TRP B 125 ASN B 134 ILE B 135 THR B 136 SITE 3 AC3 13 LEU B 137 PHE B 152 VAL B 167 SER B 182 SITE 4 AC3 13 ZCQ B 201 SITE 1 AC4 12 GLY B 35 GLY B 38 ILE B 41 TRP B 125 SITE 2 AC4 12 ASN B 134 ILE B 135 PHE B 152 SER B 156 SITE 3 AC4 12 HIS B 165 VAL B 167 SER B 182 ZCQ B 201 SITE 1 AC5 12 GLY B 35 ALA B 37 ILE B 41 LEU B 70 SITE 2 AC5 12 TRP B 79 TRP B 125 ASN B 134 ILE B 135 SITE 3 AC5 12 PHE B 152 VAL B 167 TRP B 181 SER B 182 SITE 1 AC6 12 GLY B 35 ALA B 37 ILE B 41 LEU B 70 SITE 2 AC6 12 TRP B 79 TRP B 125 ASN B 134 ILE B 135 SITE 3 AC6 12 PHE B 152 VAL B 167 TRP B 181 SER B 182 CRYST1 130.486 44.150 92.167 90.00 133.47 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007664 0.000000 0.007265 0.00000 SCALE2 0.000000 0.022650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014950 0.00000