HEADER IMMUNE SYSTEM 10-FEB-19 6QN9 TITLE STRUCTURE OF BOVINE ANTI-RSV FAB B4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_TAXID: 9913; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_TAXID: 9913; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CATTLE ANTIBODIES, BOVINE RESPIRATORY SYNCYTIAL VIRUS, ANTI-RSV B4, KEYWDS 2 ANTI-RSV B13, HYBRID FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.REN,J.E.NETTLESHIP,G.HARRIS,W.MWANGI,N.RHAMAN,C.GRANT,A.KOTECHA, AUTHOR 2 E.FRY,B.CHARLESTON,D.I.STUART,J.HAMMOND,R.J.OWENS REVDAT 3 24-JAN-24 6QN9 1 REMARK REVDAT 2 21-AUG-19 6QN9 1 REMARK REVDAT 1 29-MAY-19 6QN9 0 JRNL AUTH J.REN,J.E.NETTLESHIP,G.HARRIS,W.MWANGI,N.RHAMAN,C.GRANT, JRNL AUTH 2 A.KOTECHA,E.FRY,B.CHARLESTON,D.I.STUART,J.HAMMOND,R.J.OWENS JRNL TITL THE ROLE OF THE LIGHT CHAIN IN THE STRUCTURE AND BINDING JRNL TITL 2 ACTIVITY OF TWO CATTLE ANTIBODIES THAT NEUTRALIZE BOVINE JRNL TITL 3 RESPIRATORY SYNCYTIAL VIRUS. JRNL REF MOL.IMMUNOL. V. 112 123 2019 JRNL REFN ISSN 0161-5890 JRNL PMID 31100550 JRNL DOI 10.1016/J.MOLIMM.2019.04.026 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3386: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.7822 - 4.4408 1.00 2890 149 0.2122 0.2092 REMARK 3 2 4.4408 - 3.5248 1.00 2748 132 0.2054 0.2378 REMARK 3 3 3.5248 - 3.0793 1.00 2713 142 0.2252 0.2608 REMARK 3 4 3.0793 - 2.7977 1.00 2650 156 0.2214 0.2685 REMARK 3 5 2.7977 - 2.5972 1.00 2671 153 0.2305 0.2854 REMARK 3 6 2.5972 - 2.4440 0.99 2627 152 0.2312 0.2400 REMARK 3 7 2.4440 - 2.3216 0.99 2642 136 0.2336 0.2729 REMARK 3 8 2.3216 - 2.2206 0.99 2623 118 0.2439 0.3088 REMARK 3 9 2.2206 - 2.1351 0.99 2631 142 0.2505 0.2814 REMARK 3 10 2.1351 - 2.0614 0.99 2637 139 0.2654 0.3104 REMARK 3 11 2.0614 - 1.9969 0.99 2634 109 0.2942 0.3069 REMARK 3 12 1.9969 - 1.9399 0.99 2608 152 0.3080 0.3636 REMARK 3 13 1.9399 - 1.8888 0.99 2601 139 0.3627 0.3445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3058 REMARK 3 ANGLE : 0.662 4161 REMARK 3 CHIRALITY : 0.047 484 REMARK 3 PLANARITY : 0.005 523 REMARK 3 DIHEDRAL : 13.273 1835 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9159 35.4323 -23.9978 REMARK 3 T TENSOR REMARK 3 T11: 0.4488 T22: 0.4725 REMARK 3 T33: 0.3887 T12: -0.0243 REMARK 3 T13: -0.0016 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 4.4844 L22: 0.8182 REMARK 3 L33: 5.5174 L12: -0.1853 REMARK 3 L13: 1.8340 L23: -0.4218 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.0139 S13: 0.1687 REMARK 3 S21: -0.0729 S22: -0.0449 S23: 0.0152 REMARK 3 S31: 0.0295 S32: 0.2767 S33: 0.0583 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 136 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1264 -4.5432 -9.6981 REMARK 3 T TENSOR REMARK 3 T11: 1.6977 T22: 0.6422 REMARK 3 T33: 1.4326 T12: -0.3048 REMARK 3 T13: 0.0132 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 7.3145 L22: 3.8193 REMARK 3 L33: 0.2079 L12: 5.0341 REMARK 3 L13: -0.4154 L23: -0.5364 REMARK 3 S TENSOR REMARK 3 S11: -0.2327 S12: 0.0313 S13: -1.1901 REMARK 3 S21: 0.0372 S22: 0.5751 S23: -1.4530 REMARK 3 S31: -0.4549 S32: -0.0362 S33: 0.1107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 155 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5199 12.9564 -10.5903 REMARK 3 T TENSOR REMARK 3 T11: 1.6305 T22: 0.6671 REMARK 3 T33: 0.6590 T12: -0.6262 REMARK 3 T13: -0.0520 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.9738 L22: 1.5103 REMARK 3 L33: 0.0294 L12: 1.7175 REMARK 3 L13: -0.1274 L23: -0.1225 REMARK 3 S TENSOR REMARK 3 S11: -0.8375 S12: 0.5567 S13: -0.0764 REMARK 3 S21: -0.5568 S22: 0.2127 S23: -0.4164 REMARK 3 S31: 0.2830 S32: -0.2619 S33: -1.0515 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 197 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8731 10.2791 -16.0718 REMARK 3 T TENSOR REMARK 3 T11: 1.7721 T22: 0.9655 REMARK 3 T33: 1.2415 T12: -0.3701 REMARK 3 T13: 0.6075 T23: 0.1940 REMARK 3 L TENSOR REMARK 3 L11: 3.5863 L22: 1.8626 REMARK 3 L33: 0.1539 L12: 2.3724 REMARK 3 L13: -0.7458 L23: -0.4811 REMARK 3 S TENSOR REMARK 3 S11: -0.5342 S12: 0.1995 S13: -0.7687 REMARK 3 S21: -0.4735 S22: 0.1839 S23: -0.3358 REMARK 3 S31: 0.1931 S32: 0.2079 S33: 0.1054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7857 32.8584 -32.0391 REMARK 3 T TENSOR REMARK 3 T11: 0.3994 T22: 0.4699 REMARK 3 T33: 0.3686 T12: 0.0228 REMARK 3 T13: -0.0209 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 5.9496 L22: 1.1462 REMARK 3 L33: 3.1830 L12: 0.9987 REMARK 3 L13: 0.3097 L23: -0.4279 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.1752 S13: 0.0169 REMARK 3 S21: -0.0394 S22: -0.1577 S23: -0.0928 REMARK 3 S31: 0.0475 S32: -0.6480 S33: 0.0185 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 108 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3369 2.9411 -12.1760 REMARK 3 T TENSOR REMARK 3 T11: 1.5194 T22: 0.7526 REMARK 3 T33: 1.1278 T12: -0.4154 REMARK 3 T13: 0.0415 T23: 0.0806 REMARK 3 L TENSOR REMARK 3 L11: 0.4229 L22: 1.8492 REMARK 3 L33: 1.2764 L12: 0.6326 REMARK 3 L13: 0.4774 L23: 0.4376 REMARK 3 S TENSOR REMARK 3 S11: 0.2376 S12: -0.2210 S13: -0.5402 REMARK 3 S21: 0.3742 S22: -0.2191 S23: -0.0717 REMARK 3 S31: 0.6359 S32: -0.0032 S33: -0.3893 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 128 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7583 5.1277 -5.3097 REMARK 3 T TENSOR REMARK 3 T11: 1.4801 T22: 0.8284 REMARK 3 T33: 0.8718 T12: -0.5391 REMARK 3 T13: -0.0852 T23: 0.1218 REMARK 3 L TENSOR REMARK 3 L11: 2.7436 L22: 4.4248 REMARK 3 L33: 1.3858 L12: -0.3411 REMARK 3 L13: 1.3329 L23: 1.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.3252 S12: -0.5913 S13: -0.1436 REMARK 3 S21: -0.4606 S22: 0.0814 S23: 0.0715 REMARK 3 S31: 0.4679 S32: -0.8376 S33: 0.2323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 67.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE 25.0% W/V REMARK 280 POLYETHYLENE GLYCOL 3350 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.16750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.43650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.16750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.43650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 149 REMARK 465 SER H 150 REMARK 465 THR H 151 REMARK 465 VAL H 152 REMARK 465 THR H 153 REMARK 465 THR H 169 REMARK 465 TRP H 170 REMARK 465 ASN H 171 REMARK 465 SER H 172 REMARK 465 GLY H 173 REMARK 465 ALA H 174 REMARK 465 LEU H 175 REMARK 465 LYS H 176 REMARK 465 SER H 177 REMARK 465 GLY H 178 REMARK 465 VAL H 179 REMARK 465 VAL H 198 REMARK 465 THR H 199 REMARK 465 VAL H 200 REMARK 465 PRO H 201 REMARK 465 GLY H 202 REMARK 465 SER H 203 REMARK 465 THR H 204 REMARK 465 SER H 205 REMARK 465 GLY H 206 REMARK 465 THR H 207 REMARK 465 GLN H 208 REMARK 465 THR H 209 REMARK 465 PHE H 210 REMARK 465 THR H 211 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 ALA H 226 REMARK 465 VAL H 227 REMARK 465 ASP H 228 REMARK 465 PRO H 229 REMARK 465 ARG H 230 REMARK 465 CYS H 231 REMARK 465 GLY H 232 REMARK 465 LYS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 GLN L 1 REMARK 465 ALA L 2 REMARK 465 CYS L 213 REMARK 465 SER L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP L 186 OH TYR L 193 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -11.80 76.89 REMARK 500 SER H 105 -154.53 -117.27 REMARK 500 CYS H 143 72.86 -110.06 REMARK 500 ASN L 28 -84.26 -123.53 REMARK 500 TYR L 51 -82.24 64.69 REMARK 500 GLU L 52 -74.15 -120.48 REMARK 500 TYR L 94 -55.58 -22.43 REMARK 500 PRO L 122 -136.53 -73.16 REMARK 500 ASN L 130 77.14 36.54 REMARK 500 ASP L 140 76.70 64.00 REMARK 500 SER L 145 45.85 -151.28 REMARK 500 ASN L 160 60.48 60.07 REMARK 500 SER L 167 -167.73 -102.69 REMARK 500 GLN L 169 -91.96 -75.99 REMARK 500 SER L 170 13.32 -158.48 REMARK 500 LYS L 173 -168.49 -124.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6QN7 RELATED DB: PDB REMARK 900 RELATED ID: 6QN8 RELATED DB: PDB DBREF 6QN9 H 1 239 PDB 6QN9 6QN9 1 239 DBREF 6QN9 L 1 214 PDB 6QN9 6QN9 1 214 SEQRES 1 H 239 GLN VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 H 239 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 239 PHE SER LEU SER SER TYR SER VAL SER TRP VAL ARG GLN SEQRES 4 H 239 ALA PRO GLY LYS THR LEU GLU TRP LEU GLY ASP ALA SER SEQRES 5 H 239 ASN GLY GLY ILE ILE TYR TYR ASN PRO ALA LEU LYS SER SEQRES 6 H 239 ARG LEU GLY ILE THR ARG ASP ASN SER LYS SER GLN VAL SEQRES 7 H 239 SER LEU SER LEU ASN THR ILE THR PRO GLU ASP THR ALA SEQRES 8 H 239 THR TYR TYR CYS ALA LYS CYS SER VAL GLY ASP SER GLY SEQRES 9 H 239 SER TYR ALA CYS THR GLY ARG LYS GLY GLU TYR VAL ASP SEQRES 10 H 239 ALA TRP GLY GLN GLY LEU LEU VAL THR VAL SER SER ALA SEQRES 11 H 239 SER THR THR ALA PRO LYS VAL TYR PRO LEU SER SER CYS SEQRES 12 H 239 CYS GLY ASP LYS SER SER SER THR VAL THR LEU GLY CYS SEQRES 13 H 239 LEU VAL SER SER TYR MET PRO GLU PRO VAL THR VAL THR SEQRES 14 H 239 TRP ASN SER GLY ALA LEU LYS SER GLY VAL HIS THR PHE SEQRES 15 H 239 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 H 239 SER MET VAL THR VAL PRO GLY SER THR SER GLY THR GLN SEQRES 17 H 239 THR PHE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 18 H 239 LYS VAL ASP LYS ALA VAL ASP PRO ARG CYS GLY LYS HIS SEQRES 19 H 239 HIS HIS HIS HIS HIS SEQRES 1 L 214 GLN ALA VAL LEU THR GLN PRO PRO SER VAL SER GLY SER SEQRES 2 L 214 LEU GLY GLN ARG VAL SER ILE THR CYS SER GLY SER SER SEQRES 3 L 214 SER ASN ILE GLY ARG TRP GLY VAL ASN TRP TYR GLN GLN SEQRES 4 L 214 VAL PRO GLY SER GLY LEU ARG THR ILE ILE TYR TYR GLU SEQRES 5 L 214 SER SER ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 214 SER LYS SER GLY ASN THR ALA THR LEU THR ILE SER SER SEQRES 7 L 214 LEU GLN ALA GLU ASP GLU ALA ASP TYR PHE CYS ALA THR SEQRES 8 L 214 GLY ASP TYR ASN ILE ALA VAL PHE GLY SER GLY THR THR SEQRES 9 L 214 LEU ILE VAL MET GLY GLN PRO LYS SER PRO PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER THR GLU GLU LEU ASN GLY ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY SER VAL THR VAL VAL TRP LYS ALA ASP GLY SER THR SEQRES 13 L 214 ILE THR ARG ASN VAL GLU THR THR ARG ALA SER LYS GLN SEQRES 14 L 214 SER ASN SER LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR SER SER ASP TRP LYS SER LYS GLY SER TYR SER CYS SEQRES 16 L 214 GLU VAL THR HIS GLU GLY SER THR VAL THR LYS THR VAL SEQRES 17 L 214 LYS PRO SER GLU CYS SER HET GOL L 301 6 HET GOL L 302 6 HET SO4 L 303 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *72(H2 O) HELIX 1 AA1 THR H 86 THR H 90 5 5 HELIX 2 AA2 GLN L 80 GLU L 84 5 5 HELIX 3 AA3 SER L 123 GLY L 129 1 7 HELIX 4 AA4 THR L 183 LYS L 190 1 8 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA1 4 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 LEU H 67 ASP H 72 -1 N THR H 70 O SER H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 LEU H 123 VAL H 127 1 O THR H 126 N VAL H 12 SHEET 3 AA2 6 ALA H 91 CYS H 98 -1 N ALA H 91 O VAL H 125 SHEET 4 AA2 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA2 6 LEU H 45 ALA H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA2 6 ILE H 57 TYR H 59 -1 O TYR H 58 N ASP H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 LEU H 123 VAL H 127 1 O THR H 126 N VAL H 12 SHEET 3 AA3 4 ALA H 91 CYS H 98 -1 N ALA H 91 O VAL H 125 SHEET 4 AA3 4 VAL H 116 TRP H 119 -1 O ALA H 118 N LYS H 97 SHEET 1 AA4 2 PRO H 139 LEU H 140 0 SHEET 2 AA4 2 GLY H 155 CYS H 156 -1 O GLY H 155 N LEU H 140 SHEET 1 AA5 3 VAL H 158 TYR H 161 0 SHEET 2 AA5 3 TYR H 192 LEU H 194 -1 O TYR H 192 N TYR H 161 SHEET 3 AA5 3 VAL H 185 LEU H 186 -1 N VAL H 185 O SER H 193 SHEET 1 AA6 2 VAL H 214 HIS H 216 0 SHEET 2 AA6 2 THR H 221 VAL H 223 -1 O VAL H 223 N VAL H 214 SHEET 1 AA7 5 SER L 9 GLY L 12 0 SHEET 2 AA7 5 THR L 103 VAL L 107 1 O ILE L 106 N VAL L 10 SHEET 3 AA7 5 ASP L 86 ASP L 93 -1 N TYR L 87 O THR L 103 SHEET 4 AA7 5 ASN L 35 GLN L 39 -1 N ASN L 35 O ALA L 90 SHEET 5 AA7 5 ARG L 46 ILE L 49 -1 O ARG L 46 N GLN L 38 SHEET 1 AA8 4 SER L 9 GLY L 12 0 SHEET 2 AA8 4 THR L 103 VAL L 107 1 O ILE L 106 N VAL L 10 SHEET 3 AA8 4 ASP L 86 ASP L 93 -1 N TYR L 87 O THR L 103 SHEET 4 AA8 4 ILE L 96 PHE L 99 -1 O ILE L 96 N ASP L 93 SHEET 1 AA9 3 VAL L 18 SER L 23 0 SHEET 2 AA9 3 THR L 71 ILE L 76 -1 O LEU L 74 N ILE L 20 SHEET 3 AA9 3 PHE L 63 SER L 68 -1 N SER L 68 O THR L 71 SHEET 1 AB1 4 SER L 116 PHE L 120 0 SHEET 2 AB1 4 ALA L 132 PHE L 141 -1 O SER L 139 N SER L 116 SHEET 3 AB1 4 TYR L 174 LEU L 182 -1 O LEU L 182 N ALA L 132 SHEET 4 AB1 4 VAL L 161 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 AB2 4 THR L 156 ILE L 157 0 SHEET 2 AB2 4 THR L 147 ALA L 152 -1 N TRP L 150 O ILE L 157 SHEET 3 AB2 4 TYR L 193 THR L 198 -1 O THR L 198 N THR L 147 SHEET 4 AB2 4 LYS L 206 VAL L 208 -1 O LYS L 206 N CYS L 195 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 2 CYS H 98 CYS H 108 1555 1555 2.03 SSBOND 3 CYS H 156 CYS H 212 1555 1555 2.03 SSBOND 4 CYS L 22 CYS L 89 1555 1555 2.05 SSBOND 5 CYS L 136 CYS L 195 1555 1555 2.03 CISPEP 1 MET H 162 PRO H 163 0 -2.41 CISPEP 2 GLU H 164 PRO H 165 0 -0.24 CISPEP 3 TYR L 142 PRO L 143 0 -4.88 SITE 1 AC1 7 GLY H 42 PRO L 8 ASP L 86 SER L 101 SITE 2 AC1 7 GLY L 102 THR L 104 HOH L 406 SITE 1 AC2 2 CYS H 143 TYR L 94 SITE 1 AC3 7 GLN L 38 GLN L 39 VAL L 40 SER L 43 SITE 2 AC3 7 GLY L 44 LEU L 45 ARG L 46 CRYST1 78.335 134.873 42.115 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023744 0.00000