HEADER GENE REGULATION 12-FEB-19 6QNX TITLE STRUCTURE OF THE SA2/SCC1/CTCF COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COHESIN SUBUNIT SA-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SCC3 HOMOLOG 2,STROMAL ANTIGEN 2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 64-KDA C-TERMINAL PRODUCT; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: 64-KDA CARBOXY-TERMINAL PRODUCT,65-KDA CARBOXY-TERMINAL COMPND 10 PRODUCT; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STAG2, SA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RAD21, HR21, KIAA0078, NXP1, SCC1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS COHESIN, CTCF, TAD, CHROMATIN FOLDING, GENOME REGULATION, SA2, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,K.W.MUIR,D.PANNE REVDAT 5 16-OCT-24 6QNX 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQRES HELIX ATOM REVDAT 4 15-MAY-24 6QNX 1 REMARK REVDAT 3 29-APR-20 6QNX 1 SPRSDE REVDAT 2 04-MAR-20 6QNX 1 JRNL REVDAT 1 22-JAN-20 6QNX 0 SPRSDE 29-APR-20 6QNX 6QNY JRNL AUTH Y.LI,J.H.I.HAARHUIS,A.SEDENO CACCIATORE,R.OLDENKAMP, JRNL AUTH 2 M.S.VAN RUITEN,L.WILLEMS,H.TEUNISSEN,K.W.MUIR,E.DE WIT, JRNL AUTH 3 B.D.ROWLAND,D.PANNE JRNL TITL THE STRUCTURAL BASIS FOR COHESIN-CTCF-ANCHORED LOOPS. JRNL REF NATURE V. 578 472 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 31905366 JRNL DOI 10.1038/S41586-019-1910-Z REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41804 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06M MORPHEUS DIVALENTS MIX, 0.1M REMARK 280 MORPHEUS BUFFER SYSTEM 1, 48% (V/V) MORPHEUS EOD_P8K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.51450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.51450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 255 REMARK 465 ILE A 256 REMARK 465 GLY A 257 REMARK 465 LYS A 258 REMARK 465 ARG A 259 REMARK 465 ARG A 439 REMARK 465 ARG A 440 REMARK 465 ASP A 441 REMARK 465 PRO A 442 REMARK 465 GLU A 443 REMARK 465 GLU A 444 REMARK 465 ASP A 445 REMARK 465 GLY A 446 REMARK 465 MET A 447 REMARK 465 MET A 448 REMARK 465 LYS A 449 REMARK 465 ARG A 450 REMARK 465 ARG A 451 REMARK 465 GLY A 452 REMARK 465 ARG A 453 REMARK 465 GLN A 454 REMARK 465 PRO A 506 REMARK 465 LEU A 507 REMARK 465 SER A 508 REMARK 465 GLY A 509 REMARK 465 GLU A 510 REMARK 465 ASP A 840 REMARK 465 ASN A 841 REMARK 465 ASN A 842 REMARK 465 SER A 843 REMARK 465 ALA A 844 REMARK 465 ASP A 845 REMARK 465 GLY A 846 REMARK 465 GLN A 847 REMARK 465 GLN A 848 REMARK 465 GLY A 960 REMARK 465 LEU A 961 REMARK 465 ASP A 962 REMARK 465 GLN A 963 REMARK 465 HIS A 992 REMARK 465 ASP A 1036 REMARK 465 LEU A 1049 REMARK 465 ALA A 1050 REMARK 465 GLY A 1051 REMARK 465 GLY A 1052 REMARK 465 ASP A 1053 REMARK 465 ASP A 1054 REMARK 465 ASP A 1055 REMARK 465 THR A 1056 REMARK 465 MET A 1057 REMARK 465 SER A 1058 REMARK 465 VAL A 1059 REMARK 465 ILE A 1060 REMARK 465 VAL B 281 REMARK 465 ASP B 282 REMARK 465 PRO B 283 REMARK 465 VAL B 284 REMARK 465 GLU B 285 REMARK 465 PRO B 286 REMARK 465 MET B 287 REMARK 465 PRO B 288 REMARK 465 THR B 289 REMARK 465 MET B 290 REMARK 465 THR B 291 REMARK 465 ASP B 292 REMARK 465 GLN B 293 REMARK 465 THR B 294 REMARK 465 THR B 295 REMARK 465 LEU B 296 REMARK 465 VAL B 297 REMARK 465 PRO B 298 REMARK 465 ASN B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 301 REMARK 465 GLU B 302 REMARK 465 ALA B 303 REMARK 465 PHE B 304 REMARK 465 ALA B 305 REMARK 465 LEU B 306 REMARK 465 GLU B 307 REMARK 465 PRO B 308 REMARK 465 ILE B 309 REMARK 465 ASP B 310 REMARK 465 ILE B 311 REMARK 465 THR B 312 REMARK 465 VAL B 313 REMARK 465 LYS B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 ALA B 318 REMARK 465 LYS B 319 REMARK 465 ARG B 320 REMARK 465 PRO B 395 REMARK 465 LEU B 396 REMARK 465 VAL B 397 REMARK 465 PRO B 398 REMARK 465 GLU B 399 REMARK 465 ASP B 400 REMARK 465 LEU B 401 REMARK 465 ARG B 402 REMARK 465 LYS B 403 REMARK 465 ARG B 404 REMARK 465 ARG B 405 REMARK 465 LYS B 406 REMARK 465 GLY B 407 REMARK 465 GLY B 408 REMARK 465 GLU B 409 REMARK 465 ALA B 410 REMARK 465 ASP B 411 REMARK 465 ASN B 412 REMARK 465 LEU B 413 REMARK 465 ASP B 414 REMARK 465 GLU B 415 REMARK 465 PHE B 416 REMARK 465 LEU B 417 REMARK 465 LYS B 418 REMARK 465 GLU B 419 REMARK 465 PHE B 420 REMARK 465 ASP C 222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 942 HG SER A 946 1.50 REMARK 500 HD1 HIS A 536 O PRO A 537 1.51 REMARK 500 O TRP A 495 H ASN A 499 1.55 REMARK 500 HH TYR A 479 O VAL A 539 1.59 REMARK 500 H MET A 197 O HOH A 1304 1.59 REMARK 500 O GLN A 187 O HOH A 1301 1.82 REMARK 500 OG1 THR A 228 OE1 GLU A 311 2.03 REMARK 500 O HOH A 1303 O HOH A 1306 2.09 REMARK 500 OD1 ASP A 111 OH TYR A 195 2.11 REMARK 500 O SER A 942 OG SER A 946 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 554 N PHE A 938 1455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A1039 C PRO A1040 N 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 221 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 MET A 224 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 MET A 227 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 MET A 227 CB - CG - SD ANGL. DEV. = 18.8 DEGREES REMARK 500 ASP A 559 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 973 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU A 997 CB - CG - CD2 ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO A1040 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 92 11.25 51.65 REMARK 500 ALA A 94 103.54 -58.42 REMARK 500 SER A 189 -71.91 -154.03 REMARK 500 TYR A 195 -49.72 -139.69 REMARK 500 ASN A 253 7.45 -66.80 REMARK 500 VAL A 292 -57.42 -123.17 REMARK 500 ASP A 338 150.71 -47.96 REMARK 500 SER A 401 -44.29 -146.29 REMARK 500 GLU A 402 -62.89 74.81 REMARK 500 THR A 406 147.62 76.59 REMARK 500 ALA A 512 -134.33 -102.33 REMARK 500 CYS A 640 53.50 -103.62 REMARK 500 GLU A 678 101.95 -50.68 REMARK 500 MET A 725 116.58 -169.78 REMARK 500 SER A 752 -33.88 -38.25 REMARK 500 PHE A 798 31.03 -95.82 REMARK 500 MET A 803 15.98 -162.58 REMARK 500 VAL A 814 78.43 -103.34 REMARK 500 ASP A 838 -89.96 -87.67 REMARK 500 ASP A 850 -177.95 68.07 REMARK 500 ASP A 911 83.16 -160.96 REMARK 500 ASN A 934 -80.25 -78.11 REMARK 500 PHE A 999 -7.65 -58.40 REMARK 500 LYS A1015 7.30 -67.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 751 SER A 752 146.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 6QNX A 80 1060 UNP Q8N3U4 STAG2_HUMAN 80 1060 DBREF 6QNX B 281 420 UNP O60216 RAD21_HUMAN 281 420 DBREF 6QNX C 222 231 UNP P49711 CTCF_HUMAN 222 231 SEQRES 1 A 981 GLU ASN MET MET LEU PHE GLU VAL VAL LYS MET GLY LYS SEQRES 2 A 981 SER ALA MET GLN SER VAL VAL ASP ASP TRP ILE GLU SER SEQRES 3 A 981 TYR LYS HIS ASP ARG ASP ILE ALA LEU LEU ASP LEU ILE SEQRES 4 A 981 ASN PHE PHE ILE GLN CYS SER GLY CYS LYS GLY VAL VAL SEQRES 5 A 981 THR ALA GLU MET PHE ARG HIS MET GLN ASN SER GLU ILE SEQRES 6 A 981 ILE ARG LYS MET THR GLU GLU PHE ASP GLU ASP SER GLY SEQRES 7 A 981 ASP TYR PRO LEU THR MET ALA GLY PRO GLN TRP LYS LYS SEQRES 8 A 981 PHE LYS SER SER PHE CYS GLU PHE ILE GLY VAL LEU VAL SEQRES 9 A 981 ARG GLN CYS GLN TYR SER ILE ILE TYR ASP GLU TYR MET SEQRES 10 A 981 MET ASP THR VAL ILE SER LEU LEU THR GLY LEU SER ASP SEQRES 11 A 981 SER GLN VAL ARG ALA PHE ARG HIS THR SER THR LEU ALA SEQRES 12 A 981 ALA MET LYS LEU MET THR ALA LEU VAL ASN VAL ALA LEU SEQRES 13 A 981 ASN LEU SER ILE ASN MET ASP ASN THR GLN ARG GLN TYR SEQRES 14 A 981 GLU ALA GLU ARG ASN LYS MET ILE GLY LYS ARG ALA ASN SEQRES 15 A 981 GLU ARG LEU GLU LEU LEU LEU GLN LYS ARG LYS GLU LEU SEQRES 16 A 981 GLN GLU ASN GLN ASP GLU ILE GLU ASN MET MET ASN ALA SEQRES 17 A 981 ILE PHE LYS GLY VAL PHE VAL HIS ARG TYR ARG ASP ALA SEQRES 18 A 981 ILE ALA GLU ILE ARG ALA ILE CYS ILE GLU GLU ILE GLY SEQRES 19 A 981 ILE TRP MET LYS MET TYR SER ASP ALA PHE LEU ASN ASP SEQRES 20 A 981 SER TYR LEU LYS TYR VAL GLY TRP THR MET HIS ASP LYS SEQRES 21 A 981 GLN GLY GLU VAL ARG LEU LYS CYS LEU THR ALA LEU GLN SEQRES 22 A 981 GLY LEU TYR TYR ASN LYS GLU LEU ASN SER LYS LEU GLU SEQRES 23 A 981 LEU PHE THR SER ARG PHE LYS ASP ARG ILE VAL SER MET SEQRES 24 A 981 THR LEU ASP LYS GLU TYR ASP VAL ALA VAL GLN ALA ILE SEQRES 25 A 981 LYS LEU LEU THR LEU VAL LEU GLN SER SER GLU GLU VAL SEQRES 26 A 981 LEU THR ALA GLU ASP CYS GLU ASN VAL TYR HIS LEU VAL SEQRES 27 A 981 TYR SER ALA HIS ARG PRO VAL ALA VAL ALA ALA GLY GLU SEQRES 28 A 981 PHE LEU TYR LYS LYS LEU PHE SER ARG ARG ASP PRO GLU SEQRES 29 A 981 GLU ASP GLY MET MET LYS ARG ARG GLY ARG GLN GLY PRO SEQRES 30 A 981 ASN ALA ASN LEU VAL LYS THR LEU VAL PHE PHE PHE LEU SEQRES 31 A 981 GLU SER GLU LEU HIS GLU HIS ALA ALA TYR LEU VAL ASP SEQRES 32 A 981 SER MET TRP ASP CYS ALA THR GLU LEU LEU LYS ASP TRP SEQRES 33 A 981 GLU CYS MET ASN SER LEU LEU LEU GLU GLU PRO LEU SER SEQRES 34 A 981 GLY GLU GLU ALA LEU THR ASP ARG GLN GLU SER ALA LEU SEQRES 35 A 981 ILE GLU ILE MET LEU CYS THR ILE ARG GLN ALA ALA GLU SEQRES 36 A 981 CYS HIS PRO PRO VAL GLY ARG GLY THR GLY LYS ARG VAL SEQRES 37 A 981 LEU THR ALA LYS GLU LYS LYS THR GLN LEU ASP ASP ARG SEQRES 38 A 981 THR LYS ILE THR GLU LEU PHE ALA VAL ALA LEU PRO GLN SEQRES 39 A 981 LEU LEU ALA LYS TYR SER VAL ASP ALA GLU LYS VAL THR SEQRES 40 A 981 ASN LEU LEU GLN LEU PRO GLN TYR PHE ASP LEU GLU ILE SEQRES 41 A 981 TYR THR THR GLY ARG LEU GLU LYS HIS LEU ASP ALA LEU SEQRES 42 A 981 LEU ARG GLN ILE ARG ASN ILE VAL GLU LYS HIS THR ASP SEQRES 43 A 981 THR ASP VAL LEU GLU ALA CYS SER LYS THR TYR HIS ALA SEQRES 44 A 981 LEU CYS ASN GLU GLU PHE THR ILE PHE ASN ARG VAL ASP SEQRES 45 A 981 ILE SER ARG SER GLN LEU ILE ASP GLU LEU ALA ASP LYS SEQRES 46 A 981 PHE ASN ARG LEU LEU GLU ASP PHE LEU GLN GLU GLY GLU SEQRES 47 A 981 GLU PRO ASP GLU ASP ASP ALA TYR GLN VAL LEU SER THR SEQRES 48 A 981 LEU LYS ARG ILE THR ALA PHE HIS ASN ALA HIS ASP LEU SEQRES 49 A 981 SER LYS TRP ASP LEU PHE ALA CYS ASN TYR LYS LEU LEU SEQRES 50 A 981 LYS THR GLY ILE GLU ASN GLY ASP MET PRO GLU GLN ILE SEQRES 51 A 981 VAL ILE HIS ALA LEU GLN CYS THR HIS TYR VAL ILE LEU SEQRES 52 A 981 TRP GLN LEU ALA LYS ILE THR GLU SER SER SER THR LYS SEQRES 53 A 981 GLU ASP LEU LEU ARG LEU LYS LYS GLN MET ARG VAL PHE SEQRES 54 A 981 CYS GLN ILE CYS GLN HIS TYR LEU THR ASN VAL ASN THR SEQRES 55 A 981 THR VAL LYS GLU GLN ALA PHE THR ILE LEU CYS ASP ILE SEQRES 56 A 981 LEU MET ILE PHE SER HIS GLN ILE MET SER GLY GLY ARG SEQRES 57 A 981 ASP MET LEU GLU PRO LEU VAL TYR THR PRO ASP SER SER SEQRES 58 A 981 LEU GLN SER GLU LEU LEU SER PHE ILE LEU ASP HIS VAL SEQRES 59 A 981 PHE ILE GLU GLN ASP ASP ASP ASN ASN SER ALA ASP GLY SEQRES 60 A 981 GLN GLN GLU ASP GLU ALA SER LYS ILE GLU ALA LEU HIS SEQRES 61 A 981 LYS ARG ARG ASN LEU LEU ALA ALA PHE CYS LYS LEU ILE SEQRES 62 A 981 VAL TYR THR VAL VAL GLU MET ASN THR ALA ALA ASP ILE SEQRES 63 A 981 PHE LYS GLN TYR MET LYS TYR TYR ASN ASP TYR GLY ASP SEQRES 64 A 981 ILE ILE LYS GLU THR MET SER LYS THR ARG GLN ILE ASP SEQRES 65 A 981 LYS ILE GLN CYS ALA LYS THR LEU ILE LEU SER LEU GLN SEQRES 66 A 981 GLN LEU PHE ASN GLU MET ILE GLN GLU ASN GLY TYR ASN SEQRES 67 A 981 PHE ASP ARG SER SER SER THR PHE SER GLY ILE LYS GLU SEQRES 68 A 981 LEU ALA ARG ARG PHE ALA LEU THR PHE GLY LEU ASP GLN SEQRES 69 A 981 LEU LYS THR ARG GLU ALA ILE ALA MET LEU HIS LYS ASP SEQRES 70 A 981 GLY ILE GLU PHE ALA PHE LYS GLU PRO ASN PRO GLN GLY SEQRES 71 A 981 GLU SER HIS PRO PRO LEU ASN LEU ALA PHE LEU ASP ILE SEQRES 72 A 981 LEU SER GLU PHE SER SER LYS LEU LEU ARG GLN ASP LYS SEQRES 73 A 981 ARG THR VAL TYR VAL TYR LEU GLU LYS PHE MET THR PHE SEQRES 74 A 981 GLN MET SER LEU ARG ARG GLU ASP VAL TRP LEU PRO LEU SEQRES 75 A 981 MET SER TYR ARG ASN SER LEU LEU ALA GLY GLY ASP ASP SEQRES 76 A 981 ASP THR MET SER VAL ILE SEQRES 1 B 140 VAL ASP PRO VAL GLU PRO MET PRO THR MET THR ASP GLN SEQRES 2 B 140 THR THR LEU VAL PRO ASN GLU GLU GLU ALA PHE ALA LEU SEQRES 3 B 140 GLU PRO ILE ASP ILE THR VAL LYS GLU THR LYS ALA LYS SEQRES 4 B 140 ARG LYS ARG LYS LEU ILE VAL ASP SER VAL LYS GLU LEU SEQRES 5 B 140 ASP SER LYS THR ILE ARG ALA GLN LEU SER ASP TYR SER SEQRES 6 B 140 ASP ILE VAL THR THR LEU ASP LEU ALA PRO PRO THR LYS SEQRES 7 B 140 LYS LEU MET MET TRP LYS GLU THR GLY GLY VAL GLU LYS SEQRES 8 B 140 LEU PHE SER LEU PRO ALA GLN PRO LEU TRP ASN ASN ARG SEQRES 9 B 140 LEU LEU LYS LEU PHE THR ARG CYS LEU THR PRO LEU VAL SEQRES 10 B 140 PRO GLU ASP LEU ARG LYS ARG ARG LYS GLY GLY GLU ALA SEQRES 11 B 140 ASP ASN LEU ASP GLU PHE LEU LYS GLU PHE SEQRES 1 C 10 ASP VAL SER VAL TYR ASP PHE GLU GLU GLU FORMUL 4 HOH *6(H2 O) HELIX 1 AA1 GLU A 80 MET A 90 1 11 HELIX 2 AA2 ALA A 94 ASP A 109 1 16 HELIX 3 AA3 ASP A 109 SER A 125 1 17 HELIX 4 AA4 THR A 132 MET A 139 1 8 HELIX 5 AA5 GLN A 140 PHE A 152 1 13 HELIX 6 AA6 TYR A 159 MET A 163 5 5 HELIX 7 AA7 GLY A 165 CYS A 186 1 22 HELIX 8 AA8 SER A 189 ASP A 193 5 5 HELIX 9 AA9 TYR A 195 SER A 208 1 14 HELIX 10 AB1 VAL A 212 ASN A 253 1 42 HELIX 11 AB2 ASN A 261 VAL A 292 1 32 HELIX 12 AB3 VAL A 292 TYR A 297 1 6 HELIX 13 AB4 ILE A 301 TYR A 319 1 19 HELIX 14 AB5 TYR A 319 LEU A 324 1 6 HELIX 15 AB6 ASN A 325 MET A 336 1 12 HELIX 16 AB7 GLN A 340 ASN A 357 1 18 HELIX 17 AB8 SER A 362 MET A 378 1 17 HELIX 18 AB9 THR A 379 ASP A 381 5 3 HELIX 19 AC1 GLU A 383 SER A 401 1 19 HELIX 20 AC2 THR A 406 LEU A 416 1 11 HELIX 21 AC3 VAL A 417 SER A 419 5 3 HELIX 22 AC4 HIS A 421 PHE A 437 1 17 HELIX 23 AC5 ASN A 457 SER A 471 1 15 HELIX 24 AC6 ALA A 477 MET A 484 1 8 HELIX 25 AC7 ALA A 488 LYS A 493 1 6 HELIX 26 AC8 ASP A 494 LEU A 502 1 9 HELIX 27 AC9 THR A 514 GLU A 534 1 21 HELIX 28 AD1 THR A 549 TYR A 578 1 30 HELIX 29 AD2 ASP A 581 LEU A 589 1 9 HELIX 30 AD3 GLN A 590 ASP A 596 5 7 HELIX 31 AD4 LEU A 597 GLY A 603 1 7 HELIX 32 AD5 LEU A 605 LYS A 622 1 18 HELIX 33 AD6 ASP A 625 CYS A 640 1 16 HELIX 34 AD7 ILE A 646 LEU A 673 1 28 HELIX 35 AD8 ASP A 680 HIS A 701 1 22 HELIX 36 AD9 LEU A 703 ASP A 707 5 5 HELIX 37 AE1 LEU A 708 GLY A 723 1 16 HELIX 38 AE2 PRO A 726 ILE A 748 1 23 HELIX 39 AE3 GLU A 756 LEU A 776 1 21 HELIX 40 AE4 ASN A 780 PHE A 798 1 19 HELIX 41 AE5 SER A 799 MET A 803 5 5 HELIX 42 AE6 ARG A 807 GLU A 811 5 5 HELIX 43 AE7 ASP A 818 VAL A 833 1 16 HELIX 44 AE8 ASP A 850 TYR A 874 1 25 HELIX 45 AE9 GLU A 878 THR A 881 5 4 HELIX 46 AF1 ALA A 882 LYS A 887 1 6 HELIX 47 AF2 TYR A 892 ASP A 911 1 20 HELIX 48 AF3 ASP A 911 ASN A 934 1 24 HELIX 49 AF4 SER A 942 THR A 958 1 17 HELIX 50 AF5 THR A 966 PHE A 982 1 17 HELIX 51 AF6 ALA A 998 SER A 1004 1 7 HELIX 52 AF7 GLU A 1005 LEU A 1010 5 6 HELIX 53 AF8 GLN A 1013 MET A 1026 1 14 HELIX 54 AF9 THR A 1027 ARG A 1033 1 7 HELIX 55 AG1 TRP A 1038 ASN A 1046 1 9 HELIX 56 AG2 ASP B 333 ASP B 343 1 11 HELIX 57 AG3 THR B 357 THR B 366 1 10 HELIX 58 AG4 GLY B 368 PHE B 373 1 6 HELIX 59 AG5 ASN B 382 ARG B 391 1 10 HELIX 60 AG6 VAL C 223 ASP C 227 5 5 CRYST1 79.029 107.255 176.490 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012654 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005666 0.00000