HEADER TRANSFERASE 12-FEB-19 6QO3 TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 2 (5-AMINO-3-(2- TITLE 3 THIENYL) PYRAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 24-JAN-24 6QO3 1 COMPND SOURCE HETNAM HETSYN REVDAT 3 26-AUG-20 6QO3 1 JRNL REVDAT 2 05-AUG-20 6QO3 1 JRNL REVDAT 1 04-MAR-20 6QO3 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2991 - 4.6776 1.00 2757 167 0.1658 0.2468 REMARK 3 2 4.6776 - 3.7130 1.00 2627 168 0.1435 0.1509 REMARK 3 3 3.7130 - 3.2437 1.00 2603 160 0.1693 0.2087 REMARK 3 4 3.2437 - 2.9471 1.00 2611 131 0.1879 0.2098 REMARK 3 5 2.9471 - 2.7359 1.00 2588 143 0.1980 0.2155 REMARK 3 6 2.7359 - 2.5746 1.00 2595 127 0.1925 0.2204 REMARK 3 7 2.5746 - 2.4457 1.00 2583 146 0.1815 0.1845 REMARK 3 8 2.4457 - 2.3392 1.00 2573 137 0.1724 0.2329 REMARK 3 9 2.3392 - 2.2491 1.00 2570 139 0.1734 0.1995 REMARK 3 10 2.2491 - 2.1715 1.00 2576 127 0.1758 0.2223 REMARK 3 11 2.1715 - 2.1036 1.00 2585 126 0.1724 0.2344 REMARK 3 12 2.1036 - 2.0435 1.00 2527 159 0.1740 0.1948 REMARK 3 13 2.0435 - 1.9897 1.00 2565 147 0.1722 0.1922 REMARK 3 14 1.9897 - 1.9411 1.00 2538 147 0.1662 0.1975 REMARK 3 15 1.9411 - 1.8970 1.00 2516 160 0.1740 0.1926 REMARK 3 16 1.8970 - 1.8566 1.00 2572 138 0.1737 0.2015 REMARK 3 17 1.8566 - 1.8195 1.00 2578 126 0.1819 0.2137 REMARK 3 18 1.8195 - 1.7852 1.00 2502 164 0.1862 0.2387 REMARK 3 19 1.7852 - 1.7533 1.00 2552 124 0.2009 0.2335 REMARK 3 20 1.7533 - 1.7236 1.00 2533 129 0.2179 0.2345 REMARK 3 21 1.7236 - 1.6958 1.00 2577 123 0.2284 0.2534 REMARK 3 22 1.6958 - 1.6697 1.00 2523 159 0.2377 0.2744 REMARK 3 23 1.6697 - 1.6451 1.00 2592 101 0.2723 0.3512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3384 REMARK 3 ANGLE : 1.028 4631 REMARK 3 CHIRALITY : 0.043 525 REMARK 3 PLANARITY : 0.006 600 REMARK 3 DIHEDRAL : 11.904 1228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3681 13.1467 -22.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.3645 REMARK 3 T33: 0.2896 T12: -0.0266 REMARK 3 T13: 0.0146 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.0851 L22: 0.1169 REMARK 3 L33: 0.0283 L12: 0.0950 REMARK 3 L13: -0.0080 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.6538 S13: -0.1114 REMARK 3 S21: -0.3842 S22: 0.1221 S23: -0.0812 REMARK 3 S31: 0.1664 S32: -0.3181 S33: -0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2042 19.3407 -14.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.2225 T22: 0.2464 REMARK 3 T33: 0.2596 T12: 0.0052 REMARK 3 T13: -0.0029 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.1101 L22: 0.3292 REMARK 3 L33: 0.5823 L12: -0.0707 REMARK 3 L13: -0.0062 L23: -0.3433 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: 0.1523 S13: 0.0459 REMARK 3 S21: -0.1847 S22: 0.1552 S23: -0.1134 REMARK 3 S31: -0.1604 S32: -0.0866 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9998 9.8679 -10.7567 REMARK 3 T TENSOR REMARK 3 T11: 0.2043 T22: 0.1934 REMARK 3 T33: 0.2239 T12: -0.0138 REMARK 3 T13: 0.0071 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.7998 L22: 0.1522 REMARK 3 L33: 1.1310 L12: -0.2678 REMARK 3 L13: -0.4206 L23: -0.0538 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: -0.0252 S13: -0.0802 REMARK 3 S21: -0.0870 S22: 0.0732 S23: 0.0429 REMARK 3 S31: 0.0306 S32: -0.0165 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3479 9.4651 -2.6518 REMARK 3 T TENSOR REMARK 3 T11: 0.2247 T22: 0.2305 REMARK 3 T33: 0.2234 T12: 0.0081 REMARK 3 T13: 0.0041 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: 0.0235 REMARK 3 L33: 0.0907 L12: -0.0275 REMARK 3 L13: -0.0494 L23: 0.0555 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: -0.2002 S13: -0.2030 REMARK 3 S21: -0.1095 S22: 0.0360 S23: 0.0724 REMARK 3 S31: 0.0947 S32: 0.1118 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9344 12.7088 -18.4579 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.2057 REMARK 3 T33: 0.2135 T12: -0.0183 REMARK 3 T13: 0.0070 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.3727 L22: 0.1793 REMARK 3 L33: 0.1471 L12: 0.0927 REMARK 3 L13: -0.1121 L23: -0.1742 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.0811 S13: 0.1024 REMARK 3 S21: -0.0465 S22: 0.0609 S23: -0.0351 REMARK 3 S31: -0.0947 S32: -0.0480 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1981 0.6280 -24.8310 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.2686 REMARK 3 T33: 0.2885 T12: -0.0497 REMARK 3 T13: -0.0381 T23: -0.1419 REMARK 3 L TENSOR REMARK 3 L11: 0.1243 L22: 0.2860 REMARK 3 L33: 0.4949 L12: 0.0809 REMARK 3 L13: -0.1238 L23: -0.3735 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.1783 S13: -0.2388 REMARK 3 S21: -0.2232 S22: -0.2008 S23: 0.1876 REMARK 3 S31: 0.3133 S32: -0.1130 S33: -0.2757 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7790 4.3187 -40.8243 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.2580 REMARK 3 T33: 0.2501 T12: -0.0219 REMARK 3 T13: 0.0350 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.2567 L22: 0.1380 REMARK 3 L33: 0.1609 L12: -0.1318 REMARK 3 L13: 0.0151 L23: 0.1112 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: 0.0099 S13: 0.2207 REMARK 3 S21: -0.3383 S22: 0.0627 S23: -0.2484 REMARK 3 S31: -0.0998 S32: 0.2079 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0982 2.0004 -24.1067 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2762 REMARK 3 T33: 0.2138 T12: 0.0246 REMARK 3 T13: -0.0204 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.2864 L22: 0.1231 REMARK 3 L33: 0.0579 L12: 0.0672 REMARK 3 L13: -0.0436 L23: 0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.1827 S13: 0.0930 REMARK 3 S21: -0.0004 S22: 0.0666 S23: -0.2306 REMARK 3 S31: -0.0521 S32: 0.1236 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5349 18.2196 -35.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.2740 REMARK 3 T33: 0.2134 T12: 0.0294 REMARK 3 T13: -0.0215 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.9738 L22: 0.4649 REMARK 3 L33: 0.6789 L12: 0.4001 REMARK 3 L13: -0.1312 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.2010 S13: -0.0025 REMARK 3 S21: -0.0795 S22: -0.1195 S23: 0.3854 REMARK 3 S31: -0.0890 S32: -0.2427 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1627 19.0697 -28.4869 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.1867 REMARK 3 T33: 0.2222 T12: -0.0118 REMARK 3 T13: 0.0125 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 0.5005 REMARK 3 L33: 0.8729 L12: -0.3529 REMARK 3 L13: -0.5763 L23: 0.4785 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0403 S13: 0.1306 REMARK 3 S21: -0.1280 S22: 0.0215 S23: -0.0276 REMARK 3 S31: -0.0450 S32: -0.0213 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3625 28.4384 -10.0442 REMARK 3 T TENSOR REMARK 3 T11: 0.3570 T22: 0.3361 REMARK 3 T33: 0.4527 T12: 0.0078 REMARK 3 T13: -0.1076 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.0279 L22: 0.0685 REMARK 3 L33: 0.0248 L12: 0.0557 REMARK 3 L13: 0.0079 L23: 0.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.1336 S12: -0.3148 S13: 0.1446 REMARK 3 S21: 0.1323 S22: -0.0864 S23: -0.2240 REMARK 3 S31: -0.2918 S32: 0.1899 S33: -0.0003 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6036 19.6401 4.6202 REMARK 3 T TENSOR REMARK 3 T11: 0.2244 T22: 0.3584 REMARK 3 T33: 0.2521 T12: 0.0449 REMARK 3 T13: -0.0405 T23: -0.1097 REMARK 3 L TENSOR REMARK 3 L11: 0.5251 L22: 0.7459 REMARK 3 L33: 0.0367 L12: 0.3359 REMARK 3 L13: -0.2849 L23: -0.1321 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: -0.3640 S13: 0.2537 REMARK 3 S21: 0.2284 S22: 0.1563 S23: -0.1271 REMARK 3 S31: 0.0925 S32: 0.0742 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62564 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 79.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.15200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.07400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.69850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.07400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.15200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.69850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 GLN A 18 CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLU A 180 OE1 OE2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 LYS B 23 CE NZ REMARK 470 ASP B 31 OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 LEU B 160 CD1 CD2 REMARK 470 PRO B 182 O REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 159 -94.68 -99.08 REMARK 500 SER B 19 -133.10 44.70 REMARK 500 TYR B 111 -142.39 53.26 REMARK 500 LEU B 160 -105.03 50.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9N A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9N B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QO3 A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QO3 B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QO3 GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO3 SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO3 GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QO3 SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET J9N A 301 11 HET J9N B 301 11 HETNAM J9N 3-THIOPHEN-2-YL-1H-PYRAZOL-5-AMINE HETSYN J9N 5-AMINO-3-(2-THIENYL)-PYRAZOLE FORMUL 3 J9N 2(C7 H7 N3 S) FORMUL 5 HOH *314(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 GLN B 18 ALA B 27 1 10 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 GLN B 116 THR B 124 1 9 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.72 CISPEP 2 ARG B 186 PRO B 187 0 2.64 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 12 TYR A 111 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 12 TYR A 136 LEU A 138 GLY A 140 GLY A 141 SITE 1 AC2 10 PRO B 83 THR B 84 PRO B 85 SER B 132 SITE 2 AC2 10 ILE B 133 GLY B 134 TYR B 136 LEU B 138 SITE 3 AC2 10 GLY B 140 GLY B 141 CRYST1 74.304 79.397 86.148 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011608 0.00000