HEADER TRANSFERASE 12-FEB-19 6QOC TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 6 (2-(1,3-OXAZOL-5- TITLE 3 YL) ANILINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: TRMD, MAB_3226C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOC 1 REMARK REVDAT 3 26-AUG-20 6QOC 1 JRNL REVDAT 2 05-AUG-20 6QOC 1 JRNL REVDAT 1 04-MAR-20 6QOC 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8323 - 4.6305 1.00 2783 205 0.1764 0.1872 REMARK 3 2 4.6305 - 3.6759 1.00 2707 164 0.1527 0.1739 REMARK 3 3 3.6759 - 3.2113 1.00 2703 134 0.1880 0.2156 REMARK 3 4 3.2113 - 2.9178 1.00 2647 155 0.2032 0.2320 REMARK 3 5 2.9178 - 2.7087 1.00 2655 148 0.2094 0.2347 REMARK 3 6 2.7087 - 2.5490 1.00 2662 139 0.2005 0.2361 REMARK 3 7 2.5490 - 2.4213 1.00 2647 156 0.1927 0.2248 REMARK 3 8 2.4213 - 2.3159 1.00 2618 149 0.1918 0.2365 REMARK 3 9 2.3159 - 2.2268 1.00 2672 126 0.1962 0.2190 REMARK 3 10 2.2268 - 2.1500 1.00 2618 136 0.1886 0.2476 REMARK 3 11 2.1500 - 2.0827 1.00 2640 139 0.1947 0.2222 REMARK 3 12 2.0827 - 2.0232 1.00 2649 127 0.1968 0.2629 REMARK 3 13 2.0232 - 1.9699 1.00 2607 132 0.1988 0.2355 REMARK 3 14 1.9699 - 1.9219 1.00 2658 112 0.2025 0.2499 REMARK 3 15 1.9219 - 1.8782 1.00 2623 148 0.2343 0.2465 REMARK 3 16 1.8782 - 1.8382 1.00 2615 126 0.2635 0.3573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3336 REMARK 3 ANGLE : 1.047 4567 REMARK 3 CHIRALITY : 0.042 513 REMARK 3 PLANARITY : 0.006 595 REMARK 3 DIHEDRAL : 12.663 1216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.8116 92.4532 108.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.3204 T22: 0.5715 REMARK 3 T33: 0.3666 T12: 0.0253 REMARK 3 T13: -0.0007 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0716 L22: -0.0245 REMARK 3 L33: 0.5810 L12: -0.0411 REMARK 3 L13: -0.2962 L23: 0.1211 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: -0.8890 S13: 0.1055 REMARK 3 S21: -0.1004 S22: 0.0113 S23: 0.0428 REMARK 3 S31: -0.0612 S32: 0.5363 S33: 0.0027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.8162 91.2780 108.4548 REMARK 3 T TENSOR REMARK 3 T11: 0.3834 T22: 0.4972 REMARK 3 T33: 0.3471 T12: -0.0743 REMARK 3 T13: -0.0043 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.3427 L22: 0.7307 REMARK 3 L33: -0.0351 L12: 0.0948 REMARK 3 L13: -0.1638 L23: -0.1094 REMARK 3 S TENSOR REMARK 3 S11: 0.2947 S12: -0.6623 S13: -0.1550 REMARK 3 S21: 0.7981 S22: -0.5052 S23: -0.1848 REMARK 3 S31: -0.8087 S32: 0.7779 S33: -0.0232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.7864 106.7534 92.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.3844 T22: 0.3480 REMARK 3 T33: 0.4425 T12: -0.0404 REMARK 3 T13: 0.0549 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.4620 L22: 0.3888 REMARK 3 L33: 0.5100 L12: 0.1544 REMARK 3 L13: -0.3465 L23: -0.3276 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: -0.0286 S13: 0.3100 REMARK 3 S21: 0.2545 S22: 0.1139 S23: 0.3018 REMARK 3 S31: -0.4499 S32: 0.0331 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.0536 89.5011 95.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.3651 REMARK 3 T33: 0.3651 T12: 0.0228 REMARK 3 T13: 0.0011 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.6148 L22: 0.3587 REMARK 3 L33: 1.0171 L12: 0.0812 REMARK 3 L13: -0.2159 L23: 0.0706 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.1320 S13: -0.2691 REMARK 3 S21: 0.0044 S22: -0.0105 S23: -0.0759 REMARK 3 S31: 0.1732 S32: 0.3858 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.2256 83.0302 99.2023 REMARK 3 T TENSOR REMARK 3 T11: 0.3126 T22: 0.2292 REMARK 3 T33: 0.3496 T12: -0.0241 REMARK 3 T13: 0.0741 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 0.8148 L22: 0.1621 REMARK 3 L33: 0.4262 L12: 0.0652 REMARK 3 L13: 0.0477 L23: 0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: 0.2669 S13: -0.2414 REMARK 3 S21: -0.1727 S22: 0.0029 S23: -0.0556 REMARK 3 S31: 0.2666 S32: -0.4060 S33: -0.0054 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.7402 90.1602 93.1831 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.2940 REMARK 3 T33: 0.3151 T12: 0.0309 REMARK 3 T13: -0.0073 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.4113 L22: 0.5169 REMARK 3 L33: 1.2711 L12: 0.4168 REMARK 3 L13: -1.2746 L23: -0.2290 REMARK 3 S TENSOR REMARK 3 S11: -0.1117 S12: 0.0236 S13: -0.1497 REMARK 3 S21: 0.2127 S22: 0.1793 S23: 0.1150 REMARK 3 S31: 0.1098 S32: -0.1760 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.9336 88.3054 106.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.3038 REMARK 3 T33: 0.2628 T12: 0.0313 REMARK 3 T13: 0.0099 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.2679 L22: 0.7930 REMARK 3 L33: 0.1967 L12: 0.2181 REMARK 3 L13: -0.0283 L23: 0.4802 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.2711 S13: 0.0330 REMARK 3 S21: 0.0413 S22: -0.0259 S23: -0.1370 REMARK 3 S31: 0.0083 S32: 0.0473 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0522 83.3254 128.3812 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.3304 REMARK 3 T33: 0.3232 T12: 0.0697 REMARK 3 T13: 0.0800 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.5419 L22: 0.1862 REMARK 3 L33: 0.3407 L12: 0.0617 REMARK 3 L13: 0.0348 L23: -0.1446 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: 0.0015 S13: 0.0619 REMARK 3 S21: 0.1148 S22: 0.0494 S23: 0.2143 REMARK 3 S31: -0.1645 S32: -0.2856 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0967 80.8908 110.5544 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.3516 REMARK 3 T33: 0.3130 T12: -0.0265 REMARK 3 T13: -0.0177 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.4372 L22: 0.5643 REMARK 3 L33: 0.5129 L12: -0.0012 REMARK 3 L13: 0.0550 L23: 0.4798 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0529 S13: 0.1323 REMARK 3 S21: -0.0940 S22: 0.1173 S23: 0.5031 REMARK 3 S31: -0.0319 S32: -0.1974 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.6302 96.7383 122.6735 REMARK 3 T TENSOR REMARK 3 T11: 0.3949 T22: 0.3994 REMARK 3 T33: 0.3157 T12: -0.0203 REMARK 3 T13: 0.0173 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.9924 L22: 1.3459 REMARK 3 L33: 1.1674 L12: -0.6659 REMARK 3 L13: 0.0206 L23: -0.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: -0.1872 S13: 0.0752 REMARK 3 S21: 0.2365 S22: -0.1899 S23: -0.5021 REMARK 3 S31: -0.2696 S32: 0.3741 S33: 0.0021 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 79.9930 98.5343 117.1888 REMARK 3 T TENSOR REMARK 3 T11: 0.3842 T22: 0.2839 REMARK 3 T33: 0.3113 T12: 0.0241 REMARK 3 T13: 0.0609 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3284 L22: 0.6923 REMARK 3 L33: 1.4697 L12: 0.3615 REMARK 3 L13: -0.6878 L23: -1.0648 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: -0.0786 S13: 0.1842 REMARK 3 S21: 0.2171 S22: 0.1104 S23: 0.1319 REMARK 3 S31: -0.0840 S32: -0.0152 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.1513 98.0441 104.6898 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2651 REMARK 3 T33: 0.3020 T12: -0.0040 REMARK 3 T13: 0.0111 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.4869 L22: 0.8626 REMARK 3 L33: 1.0633 L12: -0.5675 REMARK 3 L13: 0.0640 L23: 0.8990 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0157 S13: 0.1031 REMARK 3 S21: 0.1967 S22: -0.0279 S23: 0.0758 REMARK 3 S31: 0.0229 S32: 0.0893 S33: 0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 97.1010 97.6727 81.6438 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.4139 REMARK 3 T33: 0.3021 T12: -0.0115 REMARK 3 T13: -0.0228 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 0.6375 L22: 0.5996 REMARK 3 L33: 0.3861 L12: -0.5578 REMARK 3 L13: -0.4068 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.4178 S13: 0.2417 REMARK 3 S21: -0.1646 S22: 0.0808 S23: 0.0694 REMARK 3 S31: 0.0238 S32: -0.0588 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 78.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.81300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.10250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.30050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.35600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.30050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.10250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.35600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 LEU B 178 CD1 CD2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 30 C ASP A 31 N -0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 16 -31.59 -179.23 REMARK 500 SER A 19 -29.53 -168.40 REMARK 500 PRO A 21 -117.01 -82.09 REMARK 500 PRO A 157 103.56 -41.46 REMARK 500 SER B 19 -142.84 57.66 REMARK 500 TYR B 111 -132.18 55.86 REMARK 500 ARG B 125 -5.51 -141.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9Q A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9Q B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOC A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOC B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOC GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOC SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOC GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOC SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET J9Q A 301 12 HET J9Q B 301 12 HETNAM J9Q 2-(1,3-OXAZOL-5-YL)ANILINE FORMUL 3 J9Q 2(C9 H8 N2 O) FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 PHE A 9 GLN A 18 1 10 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 GLY A 228 5 5 HELIX 10 AB1 PHE B 9 ARG B 17 5 9 HELIX 11 AB2 GLN B 18 ALA B 27 1 10 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 GLN B 116 ALA B 123 1 8 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 196 SER B 201 5 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 ASP A 31 ASP A 36 0 SHEET 2 AA1 6 LYS A 2 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.49 CISPEP 2 ARG B 186 PRO B 187 0 1.79 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 TYR A 111 SITE 2 AC1 12 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 3 AC1 12 VAL A 137 LEU A 138 GLY A 140 GLY A 141 SITE 1 AC2 10 PRO B 83 THR B 84 PRO B 85 SER B 132 SITE 2 AC2 10 ILE B 133 GLY B 134 TYR B 136 LEU B 138 SITE 3 AC2 10 GLY B 140 GLY B 141 CRYST1 74.205 78.712 86.601 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011547 0.00000