HEADER TRANSFERASE 12-FEB-19 6QOD TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 7 (2-AMINO-6- TITLE 3 FLUOROBENZOTHIAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOD 1 REMARK REVDAT 3 26-AUG-20 6QOD 1 JRNL REVDAT 2 05-AUG-20 6QOD 1 JRNL REVDAT 1 04-MAR-20 6QOD 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3306 - 4.6654 1.00 2717 195 0.1740 0.1806 REMARK 3 2 4.6654 - 3.7033 1.00 2619 160 0.1446 0.1754 REMARK 3 3 3.7033 - 3.2352 1.00 2622 134 0.1754 0.1957 REMARK 3 4 3.2352 - 2.9394 1.00 2590 152 0.1976 0.2273 REMARK 3 5 2.9394 - 2.7288 1.00 2582 152 0.2037 0.2696 REMARK 3 6 2.7288 - 2.5679 1.00 2602 119 0.1998 0.2270 REMARK 3 7 2.5679 - 2.4393 1.00 2555 165 0.1850 0.1981 REMARK 3 8 2.4393 - 2.3331 1.00 2558 141 0.1830 0.2276 REMARK 3 9 2.3331 - 2.2433 1.00 2568 122 0.1829 0.2253 REMARK 3 10 2.2433 - 2.1659 1.00 2569 128 0.1796 0.2264 REMARK 3 11 2.1659 - 2.0981 1.00 2568 140 0.2059 0.2455 REMARK 3 12 2.0981 - 2.0382 1.00 2542 130 0.2007 0.2594 REMARK 3 13 2.0382 - 1.9845 1.00 2585 129 0.2111 0.2499 REMARK 3 14 1.9845 - 1.9361 1.00 2566 117 0.2356 0.2894 REMARK 3 15 1.9361 - 1.8921 1.00 2555 122 0.2746 0.3243 REMARK 3 16 1.8921 - 1.8518 1.00 2525 137 0.3073 0.3605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3320 REMARK 3 ANGLE : 1.014 4551 REMARK 3 CHIRALITY : 0.042 514 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 11.322 1196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3903 11.0885 -24.1916 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.4767 REMARK 3 T33: 0.2850 T12: -0.0248 REMARK 3 T13: -0.0175 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 0.6064 L22: 1.1663 REMARK 3 L33: 4.1738 L12: -0.6589 REMARK 3 L13: -1.0377 L23: 2.1407 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.6019 S13: -0.1976 REMARK 3 S21: -0.2864 S22: -0.0592 S23: 0.0992 REMARK 3 S31: 0.1619 S32: -0.4634 S33: 0.0125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3546 20.1997 -15.0448 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.3257 REMARK 3 T33: 0.2369 T12: 0.0351 REMARK 3 T13: -0.0163 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 3.1103 L22: 5.7889 REMARK 3 L33: 3.0690 L12: -1.7949 REMARK 3 L13: -1.6539 L23: 2.1431 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.2963 S13: 0.0927 REMARK 3 S21: -0.1718 S22: 0.0064 S23: 0.3153 REMARK 3 S31: -0.2765 S32: -0.2930 S33: 0.0292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9976 22.1874 -4.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.2557 REMARK 3 T33: 0.2971 T12: 0.0375 REMARK 3 T13: 0.0342 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.0652 L22: 2.7842 REMARK 3 L33: 4.2812 L12: -0.1321 REMARK 3 L13: 0.1064 L23: 1.6112 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0331 S13: 0.4608 REMARK 3 S21: -0.1962 S22: 0.0087 S23: -0.0679 REMARK 3 S31: -0.3879 S32: -0.0016 S33: -0.0713 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3600 8.3698 -11.6399 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.1714 REMARK 3 T33: 0.2385 T12: -0.0153 REMARK 3 T13: 0.0126 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.2472 L22: 0.2853 REMARK 3 L33: 2.9437 L12: -0.3063 REMARK 3 L13: -0.7919 L23: 0.6477 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: 0.0704 S13: -0.2657 REMARK 3 S21: -0.1235 S22: 0.1114 S23: 0.0189 REMARK 3 S31: 0.1249 S32: 0.0554 S33: 0.0122 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3889 11.2300 -11.6077 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.1761 REMARK 3 T33: 0.2082 T12: -0.0006 REMARK 3 T13: -0.0055 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.3102 L22: 0.2674 REMARK 3 L33: 2.0156 L12: -0.0809 REMARK 3 L13: -0.9482 L23: 0.1138 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.0021 S13: -0.0731 REMARK 3 S21: -0.0681 S22: 0.0610 S23: -0.0598 REMARK 3 S31: 0.0459 S32: 0.0886 S33: -0.0152 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8786 0.7821 -25.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.3849 T22: 0.2292 REMARK 3 T33: 0.3247 T12: 0.0283 REMARK 3 T13: -0.0777 T23: -0.1473 REMARK 3 L TENSOR REMARK 3 L11: 3.7449 L22: 0.8035 REMARK 3 L33: 1.0967 L12: 0.8508 REMARK 3 L13: -0.3757 L23: -0.8865 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: 0.0819 S13: -0.4950 REMARK 3 S21: -0.2621 S22: -0.3554 S23: 0.1159 REMARK 3 S31: -0.0157 S32: 0.0851 S33: -0.4420 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6929 4.4742 -41.2446 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.2705 REMARK 3 T33: 0.2511 T12: -0.0481 REMARK 3 T13: 0.0825 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.4871 L22: 3.1573 REMARK 3 L33: 1.3857 L12: -0.4733 REMARK 3 L13: 0.2982 L23: -0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: 0.1358 S13: 0.2238 REMARK 3 S21: -0.6632 S22: 0.0458 S23: -0.5316 REMARK 3 S31: -0.2267 S32: 0.2885 S33: -0.0559 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8836 2.2581 -23.7875 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.3293 REMARK 3 T33: 0.2470 T12: 0.0488 REMARK 3 T13: -0.0488 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.3888 L22: 3.4945 REMARK 3 L33: 2.3138 L12: -0.9034 REMARK 3 L13: -1.1261 L23: 2.7561 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: -0.2591 S13: 0.1577 REMARK 3 S21: 0.2747 S22: 0.2082 S23: -0.3260 REMARK 3 S31: 0.0724 S32: 0.3061 S33: -0.1478 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1336 22.0208 -32.5542 REMARK 3 T TENSOR REMARK 3 T11: 0.3181 T22: 0.3162 REMARK 3 T33: 0.3039 T12: 0.0581 REMARK 3 T13: 0.0018 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 3.2050 L22: 3.5825 REMARK 3 L33: 3.2390 L12: 0.8185 REMARK 3 L13: -0.2889 L23: 1.2409 REMARK 3 S TENSOR REMARK 3 S11: 0.1844 S12: -0.0165 S13: 0.2298 REMARK 3 S21: 0.1244 S22: -0.3508 S23: 0.6952 REMARK 3 S31: -0.3701 S32: -0.5999 S33: 0.1495 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4013 15.6175 -38.7119 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.3292 REMARK 3 T33: 0.2617 T12: 0.0274 REMARK 3 T13: -0.0316 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.6405 L22: 0.9683 REMARK 3 L33: 2.3899 L12: -0.8651 REMARK 3 L13: -1.0449 L23: 0.5866 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.1988 S13: 0.0640 REMARK 3 S21: -0.4484 S22: -0.0404 S23: 0.3700 REMARK 3 S31: -0.3097 S32: -0.4426 S33: -0.0426 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7671 19.8612 -30.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.1637 REMARK 3 T33: 0.1902 T12: -0.0187 REMARK 3 T13: 0.0344 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.3413 L22: 1.1793 REMARK 3 L33: 2.6465 L12: -0.3451 REMARK 3 L13: -0.6609 L23: 1.1330 REMARK 3 S TENSOR REMARK 3 S11: 0.1007 S12: 0.1224 S13: 0.1821 REMARK 3 S21: -0.3085 S22: 0.0370 S23: -0.1085 REMARK 3 S31: -0.2099 S32: 0.0503 S33: -0.0778 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8376 19.3591 -18.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.2332 REMARK 3 T33: 0.2538 T12: -0.0054 REMARK 3 T13: -0.0126 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.4281 L22: 0.9753 REMARK 3 L33: 3.1612 L12: -0.4578 REMARK 3 L13: -0.9117 L23: -0.6610 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0617 S13: 0.1203 REMARK 3 S21: -0.1109 S22: -0.0938 S23: -0.0187 REMARK 3 S31: -0.0873 S32: -0.2013 S33: 0.1585 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1122 22.6333 6.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.3521 REMARK 3 T33: 0.2966 T12: 0.0106 REMARK 3 T13: 0.0262 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 2.5182 L22: 1.7043 REMARK 3 L33: 1.3804 L12: 0.1284 REMARK 3 L13: -0.0465 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: -0.5488 S13: 0.4471 REMARK 3 S21: 0.2494 S22: -0.0597 S23: 0.0414 REMARK 3 S31: 0.1096 S32: -0.1021 S33: -0.0693 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1389 16.8841 3.5756 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.4441 REMARK 3 T33: 0.3419 T12: 0.0222 REMARK 3 T13: -0.0617 T23: -0.1101 REMARK 3 L TENSOR REMARK 3 L11: 2.2065 L22: 1.4340 REMARK 3 L33: 0.8037 L12: -0.6598 REMARK 3 L13: -0.8186 L23: 0.1241 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: -0.5177 S13: 0.4540 REMARK 3 S21: 0.2198 S22: 0.1867 S23: -0.3185 REMARK 3 S31: 0.1207 S32: -0.1482 S33: -0.0556 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 86.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.07150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.18950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.07150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.18950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASP A 26 REMARK 465 ALA A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLN B 18 REMARK 465 SER B 19 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 VAL A 159 CG1 CG2 REMARK 470 LYS A 206 CE NZ REMARK 470 LYS B 2 CE NZ REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 93 CD OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 LEU B 178 CD1 CD2 REMARK 470 GLU B 180 CD OE1 OE2 REMARK 470 LYS B 206 CE NZ REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 136.50 -172.22 REMARK 500 TYR A 111 -129.63 52.77 REMARK 500 ASP A 115 126.82 -39.16 REMARK 500 THR B 84 138.63 -173.01 REMARK 500 TYR B 111 -136.91 54.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FBB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FBB B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOD A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOD B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOD GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOD SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOD GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOD SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET FBB A 301 11 HET FBB B 301 11 HETNAM FBB 6-FLUORO-1,3-BENZOTHIAZOL-2-AMINE FORMUL 3 FBB 2(C7 H5 F N2 S) FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 GLN A 18 1 6 HELIX 3 AA3 ARG A 38 THR A 41 5 4 HELIX 4 AA4 LYS A 62 CYS A 74 1 13 HELIX 5 AA5 THR A 91 SER A 99 1 9 HELIX 6 AA6 ASP A 115 ALA A 123 1 9 HELIX 7 AA7 GLY A 141 ARG A 154 1 14 HELIX 8 AA8 PRO A 196 SER A 201 5 6 HELIX 9 AA9 ASP A 203 ARG A 223 1 21 HELIX 10 AB1 PRO A 224 LEU A 227 5 4 HELIX 11 AB2 PHE B 9 ARG B 17 5 9 HELIX 12 AB3 PRO B 21 GLY B 28 1 8 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 1 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 127 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.33 CISPEP 2 ARG B 186 PRO B 187 0 0.03 SITE 1 AC1 11 PRO A 83 THR A 84 PRO A 85 SER A 132 SITE 2 AC1 11 ILE A 133 TYR A 136 LEU A 138 ASN A 139 SITE 3 AC1 11 GLY A 140 GLY A 141 ALA A 144 SITE 1 AC2 12 PRO B 83 THR B 84 PRO B 85 VAL B 131 SITE 2 AC2 12 SER B 132 ILE B 133 TYR B 136 LEU B 138 SITE 3 AC2 12 ASN B 139 GLY B 140 ALA B 144 HOH B 451 CRYST1 74.143 78.379 86.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011555 0.00000