HEADER TRANSFERASE 12-FEB-19 6QOF TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 9 (ADENINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOF 1 REMARK REVDAT 3 26-AUG-20 6QOF 1 JRNL REVDAT 2 05-AUG-20 6QOF 1 JRNL REVDAT 1 26-FEB-20 6QOF 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5267 - 4.6001 1.00 2818 161 0.1698 0.2212 REMARK 3 2 4.6001 - 3.6517 1.00 2732 126 0.1528 0.1442 REMARK 3 3 3.6517 - 3.1902 1.00 2636 160 0.1825 0.2128 REMARK 3 4 3.1902 - 2.8986 1.00 2665 154 0.1961 0.2390 REMARK 3 5 2.8986 - 2.6909 1.00 2628 144 0.1991 0.2250 REMARK 3 6 2.6909 - 2.5322 1.00 2631 148 0.1892 0.2266 REMARK 3 7 2.5322 - 2.4054 1.00 2631 157 0.1860 0.2263 REMARK 3 8 2.4054 - 2.3007 1.00 2614 147 0.1813 0.2047 REMARK 3 9 2.3007 - 2.2122 1.00 2645 130 0.1731 0.2050 REMARK 3 10 2.2122 - 2.1358 1.00 2620 129 0.1741 0.2258 REMARK 3 11 2.1358 - 2.0690 1.00 2615 140 0.1898 0.2295 REMARK 3 12 2.0690 - 2.0099 1.00 2630 146 0.1849 0.2305 REMARK 3 13 2.0099 - 1.9570 1.00 2618 127 0.1919 0.2166 REMARK 3 14 1.9570 - 1.9092 1.00 2604 140 0.1925 0.2622 REMARK 3 15 1.9092 - 1.8658 1.00 2634 135 0.2046 0.2614 REMARK 3 16 1.8658 - 1.8261 1.00 2612 121 0.2155 0.3026 REMARK 3 17 1.8261 - 1.7896 1.00 2579 139 0.2352 0.2767 REMARK 3 18 1.7896 - 1.7558 1.00 2587 138 0.2452 0.3114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3404 REMARK 3 ANGLE : 1.061 4659 REMARK 3 CHIRALITY : 0.045 528 REMARK 3 PLANARITY : 0.005 603 REMARK 3 DIHEDRAL : 11.967 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1207 14.4092 -23.4958 REMARK 3 T TENSOR REMARK 3 T11: 0.2520 T22: 0.4213 REMARK 3 T33: 0.2699 T12: -0.0229 REMARK 3 T13: -0.0631 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.6303 L22: 0.6230 REMARK 3 L33: 2.0664 L12: -0.0542 REMARK 3 L13: -1.1316 L23: 0.4512 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.5031 S13: 0.0394 REMARK 3 S21: -0.1047 S22: 0.0457 S23: 0.0279 REMARK 3 S31: 0.1235 S32: -0.3483 S33: -0.0818 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.2504 20.3295 -14.2695 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2870 REMARK 3 T33: 0.2760 T12: 0.0323 REMARK 3 T13: -0.0067 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.5191 L22: 1.6762 REMARK 3 L33: 2.0879 L12: -0.9091 REMARK 3 L13: -1.4045 L23: 0.5322 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: 0.1840 S13: 0.2439 REMARK 3 S21: -0.2454 S22: 0.0287 S23: 0.0250 REMARK 3 S31: -0.2383 S32: -0.1593 S33: -0.1408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3073 10.2594 -10.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.2300 T22: 0.2243 REMARK 3 T33: 0.2184 T12: -0.0113 REMARK 3 T13: -0.0028 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.1545 L22: 1.0887 REMARK 3 L33: 1.9508 L12: -0.7433 REMARK 3 L13: -1.0109 L23: 0.4695 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.0005 S13: -0.1951 REMARK 3 S21: -0.0068 S22: 0.0990 S23: 0.1049 REMARK 3 S31: 0.1487 S32: -0.0969 S33: -0.0157 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7581 11.6978 -11.5546 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.2423 REMARK 3 T33: 0.2244 T12: 0.0055 REMARK 3 T13: -0.0329 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.5093 L22: 0.5699 REMARK 3 L33: 0.8868 L12: -0.1204 REMARK 3 L13: -0.7676 L23: -0.1311 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0150 S13: 0.0094 REMARK 3 S21: -0.0234 S22: 0.0587 S23: -0.0016 REMARK 3 S31: 0.0503 S32: -0.0378 S33: -0.0338 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6811 0.3104 -24.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.4096 T22: 0.2955 REMARK 3 T33: 0.3432 T12: -0.0481 REMARK 3 T13: -0.0368 T23: -0.1010 REMARK 3 L TENSOR REMARK 3 L11: 8.0521 L22: 1.1337 REMARK 3 L33: 0.0139 L12: 3.0025 REMARK 3 L13: -0.0378 L23: -0.0318 REMARK 3 S TENSOR REMARK 3 S11: -0.0849 S12: 0.1616 S13: -0.4549 REMARK 3 S21: -0.0797 S22: 0.0018 S23: 0.0560 REMARK 3 S31: 0.3633 S32: 0.0338 S33: -0.0425 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3654 3.8112 -40.0233 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.3110 REMARK 3 T33: 0.3225 T12: -0.0609 REMARK 3 T13: 0.0856 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.5435 L22: 2.7435 REMARK 3 L33: 1.3251 L12: -0.5459 REMARK 3 L13: 0.1815 L23: -0.6542 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0130 S13: 0.3165 REMARK 3 S21: -0.4571 S22: 0.1631 S23: -0.5950 REMARK 3 S31: -0.0786 S32: 0.4617 S33: -0.1623 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4067 2.1841 -22.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.2879 REMARK 3 T33: 0.2972 T12: 0.0417 REMARK 3 T13: -0.0526 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 1.8536 L22: 4.5924 REMARK 3 L33: 1.4557 L12: -0.8665 REMARK 3 L13: -0.5593 L23: 2.5821 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.1315 S13: 0.2494 REMARK 3 S21: 0.3560 S22: 0.1448 S23: -0.5766 REMARK 3 S31: 0.0721 S32: 0.0311 S33: -0.1121 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0191 23.3660 -31.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.2683 REMARK 3 T33: 0.3476 T12: 0.0220 REMARK 3 T13: -0.0044 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.2709 L22: 2.3023 REMARK 3 L33: 2.6823 L12: -0.2647 REMARK 3 L13: -0.2944 L23: 0.9644 REMARK 3 S TENSOR REMARK 3 S11: 0.2440 S12: 0.1811 S13: 0.4334 REMARK 3 S21: -0.2768 S22: -0.1601 S23: 0.2137 REMARK 3 S31: -0.3955 S32: -0.3711 S33: -0.0018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8022 21.9952 -37.8864 REMARK 3 T TENSOR REMARK 3 T11: 0.4604 T22: 0.3614 REMARK 3 T33: 0.3143 T12: 0.0567 REMARK 3 T13: -0.0357 T23: 0.0934 REMARK 3 L TENSOR REMARK 3 L11: 1.8858 L22: 2.8791 REMARK 3 L33: 4.3440 L12: -0.2260 REMARK 3 L13: -1.3274 L23: 2.8117 REMARK 3 S TENSOR REMARK 3 S11: 0.2290 S12: 0.5439 S13: 0.2200 REMARK 3 S21: -0.7704 S22: -0.1393 S23: 0.0621 REMARK 3 S31: -0.5345 S32: -0.3884 S33: -0.1184 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0615 2.0639 -38.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.3139 REMARK 3 T33: 0.2444 T12: 0.0115 REMARK 3 T13: 0.0402 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 5.1906 L22: 5.3176 REMARK 3 L33: 1.9321 L12: -2.6631 REMARK 3 L13: 0.3624 L23: 1.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.3294 S12: 0.0808 S13: -0.4138 REMARK 3 S21: 0.3701 S22: 0.3536 S23: 0.2422 REMARK 3 S31: -0.1605 S32: -0.1769 S33: 0.0117 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7553 19.6735 -30.2933 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.2280 REMARK 3 T33: 0.3320 T12: -0.0423 REMARK 3 T13: 0.0513 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.9922 L22: 1.8660 REMARK 3 L33: 1.6618 L12: -0.5117 REMARK 3 L13: -0.4782 L23: 1.4768 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.1028 S13: 0.2850 REMARK 3 S21: -0.3854 S22: 0.1553 S23: -0.3046 REMARK 3 S31: -0.1955 S32: 0.1725 S33: -0.1823 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1634 19.7696 -18.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.2074 REMARK 3 T33: 0.2353 T12: -0.0001 REMARK 3 T13: -0.0190 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.6560 L22: 1.1564 REMARK 3 L33: 1.5129 L12: -0.0974 REMARK 3 L13: -0.5198 L23: -0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: -0.0510 S13: 0.1878 REMARK 3 S21: -0.1239 S22: 0.0632 S23: -0.1137 REMARK 3 S31: -0.0209 S32: 0.0153 S33: -0.1064 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3202 23.2490 6.3493 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.4061 REMARK 3 T33: 0.2870 T12: 0.0572 REMARK 3 T13: 0.0153 T23: -0.0855 REMARK 3 L TENSOR REMARK 3 L11: 2.9583 L22: 1.8998 REMARK 3 L33: 1.5412 L12: 0.6778 REMARK 3 L13: -0.1119 L23: -0.5147 REMARK 3 S TENSOR REMARK 3 S11: -0.1496 S12: -0.4860 S13: 0.3523 REMARK 3 S21: 0.3013 S22: 0.2342 S23: 0.0092 REMARK 3 S31: 0.0573 S32: 0.0749 S33: -0.1484 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1141 17.0966 3.6015 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.4635 REMARK 3 T33: 0.3059 T12: 0.0160 REMARK 3 T13: -0.0953 T23: -0.1488 REMARK 3 L TENSOR REMARK 3 L11: 1.5602 L22: 1.4595 REMARK 3 L33: 0.3508 L12: -0.1650 REMARK 3 L13: -0.8353 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: -0.5655 S13: 0.2525 REMARK 3 S21: 0.3535 S22: -0.0597 S23: -0.3760 REMARK 3 S31: 0.2201 S32: -0.1925 S33: -0.0163 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 80.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.84400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.48550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.48550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.84400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CD OE1 NE2 REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 PHE A 229 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 9 65.38 -118.79 REMARK 500 ARG B 125 -10.60 -142.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOF A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOF B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOF GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOF SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOF GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOF SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET ADE A 301 10 HET EDO A 302 4 HET ADE B 301 10 HET EDO B 302 4 HETNAM ADE ADENINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADE 2(C5 H5 N5) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *207(H2 O) HELIX 1 AA1 SER A 19 ALA A 27 1 9 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 GLY A 228 5 5 HELIX 10 AB1 PHE B 9 GLN B 14 1 6 HELIX 11 AB2 SER B 19 ALA B 27 1 9 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 ASP B 115 THR B 124 1 10 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 196 SER B 201 1 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N ILE B 3 O ASP B 31 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.92 CISPEP 2 ARG B 186 PRO B 187 0 2.39 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 VAL A 131 SITE 2 AC1 12 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 3 AC1 12 LEU A 138 GLY A 140 ALA A 144 HOH A 452 SITE 1 AC2 7 SER A 19 LEU A 20 GLU A 150 TYR B 12 SITE 2 AC2 7 ASN B 139 GLY B 140 HOH B 446 SITE 1 AC3 12 PRO B 83 THR B 84 PRO B 85 VAL B 131 SITE 2 AC3 12 SER B 132 ILE B 133 GLY B 134 TYR B 136 SITE 3 AC3 12 LEU B 138 GLY B 140 ALA B 144 HOH B 451 SITE 1 AC4 8 TYR A 12 ASN A 139 GLY A 140 HOH A 448 SITE 2 AC4 8 SER B 19 LEU B 20 PRO B 21 GLU B 150 CRYST1 73.688 80.749 82.971 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012052 0.00000