HEADER TRANSFERASE 12-FEB-19 6QOH TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 11 (2-AMINO-6- TITLE 3 CHLOROPURINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOH 1 REMARK REVDAT 3 26-AUG-20 6QOH 1 JRNL REVDAT 2 05-AUG-20 6QOH 1 JRNL REVDAT 1 26-FEB-20 6QOH 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.3566 - 4.7126 1.00 2643 183 0.1849 0.2473 REMARK 3 2 4.7126 - 3.7408 1.00 2594 111 0.1559 0.1408 REMARK 3 3 3.7408 - 3.2679 1.00 2529 155 0.1775 0.2356 REMARK 3 4 3.2679 - 2.9692 1.00 2535 122 0.1913 0.2200 REMARK 3 5 2.9692 - 2.7564 1.00 2515 131 0.1976 0.2243 REMARK 3 6 2.7564 - 2.5938 1.00 2499 155 0.2050 0.2438 REMARK 3 7 2.5938 - 2.4639 1.00 2454 148 0.1915 0.1872 REMARK 3 8 2.4639 - 2.3567 1.00 2478 172 0.1928 0.2524 REMARK 3 9 2.3567 - 2.2660 1.00 2478 129 0.1918 0.2180 REMARK 3 10 2.2660 - 2.1878 1.00 2496 139 0.1920 0.2273 REMARK 3 11 2.1878 - 2.1193 1.00 2481 131 0.1916 0.2003 REMARK 3 12 2.1193 - 2.0588 1.00 2469 136 0.1970 0.2248 REMARK 3 13 2.0588 - 2.0046 1.00 2445 147 0.1980 0.2273 REMARK 3 14 2.0046 - 1.9557 1.00 2494 130 0.1920 0.2578 REMARK 3 15 1.9557 - 1.9112 1.00 2499 142 0.1913 0.2221 REMARK 3 16 1.9112 - 1.8705 1.00 2460 132 0.1990 0.2397 REMARK 3 17 1.8705 - 1.8331 1.00 2443 130 0.2132 0.2770 REMARK 3 18 1.8331 - 1.7985 1.00 2435 138 0.2228 0.2810 REMARK 3 19 1.7985 - 1.7664 1.00 2491 134 0.2453 0.2804 REMARK 3 20 1.7664 - 1.7364 1.00 2487 142 0.2568 0.2915 REMARK 3 21 1.7364 - 1.7084 1.00 2472 107 0.2677 0.3694 REMARK 3 22 1.7084 - 1.6821 1.00 2475 124 0.2551 0.3077 REMARK 3 23 1.6821 - 1.6574 1.00 2467 129 0.2415 0.2518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3335 REMARK 3 ANGLE : 1.044 4567 REMARK 3 CHIRALITY : 0.042 513 REMARK 3 PLANARITY : 0.005 590 REMARK 3 DIHEDRAL : 11.810 1206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3383 91.0430 109.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.4976 REMARK 3 T33: 0.2761 T12: -0.0186 REMARK 3 T13: -0.0532 T23: 0.0417 REMARK 3 L TENSOR REMARK 3 L11: 3.0832 L22: 5.6775 REMARK 3 L33: 6.4770 L12: 1.7934 REMARK 3 L13: -0.8027 L23: -2.9409 REMARK 3 S TENSOR REMARK 3 S11: 0.2715 S12: -0.9141 S13: -0.2585 REMARK 3 S21: 0.6019 S22: -0.2503 S23: -0.3606 REMARK 3 S31: 0.1282 S32: 0.1948 S33: -0.0225 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1696 99.3287 101.5234 REMARK 3 T TENSOR REMARK 3 T11: 0.2398 T22: 0.3569 REMARK 3 T33: 0.1977 T12: -0.0765 REMARK 3 T13: -0.0467 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 5.9786 L22: 6.0144 REMARK 3 L33: 6.8975 L12: 2.9896 REMARK 3 L13: -3.2505 L23: -3.8262 REMARK 3 S TENSOR REMARK 3 S11: 0.2178 S12: -0.5820 S13: 0.0463 REMARK 3 S21: 0.2598 S22: -0.1797 S23: -0.3435 REMARK 3 S31: -0.3202 S32: 0.5638 S33: 0.0668 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7323 101.3669 91.3132 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.2239 REMARK 3 T33: 0.2202 T12: -0.0272 REMARK 3 T13: 0.0168 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.5336 L22: 5.1218 REMARK 3 L33: 6.8874 L12: 0.3221 REMARK 3 L13: 0.5692 L23: -3.2362 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.1473 S13: 0.3610 REMARK 3 S21: 0.2015 S22: 0.2485 S23: 0.0436 REMARK 3 S31: -0.3944 S32: -0.1728 S33: -0.2182 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2575 84.0107 97.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.1479 REMARK 3 T33: 0.2539 T12: 0.0067 REMARK 3 T13: 0.0176 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 5.2669 L22: 0.6018 REMARK 3 L33: 2.5804 L12: 1.1555 REMARK 3 L13: -1.4322 L23: 0.1650 REMARK 3 S TENSOR REMARK 3 S11: -0.2903 S12: -0.0456 S13: -0.5760 REMARK 3 S21: 0.0470 S22: 0.0806 S23: -0.2256 REMARK 3 S31: 0.3396 S32: -0.0117 S33: 0.1816 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3794 93.1580 97.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1901 REMARK 3 T33: 0.1981 T12: 0.0015 REMARK 3 T13: 0.0057 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 5.0400 L22: 0.5960 REMARK 3 L33: 5.1801 L12: 1.1674 REMARK 3 L13: -1.5940 L23: 0.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.2438 S13: -0.0112 REMARK 3 S21: 0.4616 S22: 0.1038 S23: 0.1735 REMARK 3 S31: -0.3814 S32: -0.1882 S33: -0.1036 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2807 91.6178 92.8501 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.1671 REMARK 3 T33: 0.1949 T12: 0.0129 REMARK 3 T13: -0.0219 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.7970 L22: 0.6324 REMARK 3 L33: 2.4739 L12: 0.4240 REMARK 3 L13: -2.3543 L23: 0.3258 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: 0.2608 S13: -0.1950 REMARK 3 S21: 0.0902 S22: 0.0304 S23: 0.0290 REMARK 3 S31: 0.0244 S32: -0.1578 S33: 0.0011 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3258 84.7114 109.1172 REMARK 3 T TENSOR REMARK 3 T11: 0.2380 T22: 0.2342 REMARK 3 T33: 0.2174 T12: -0.0071 REMARK 3 T13: -0.0683 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 1.6089 L22: 0.8844 REMARK 3 L33: 1.3415 L12: -0.1956 REMARK 3 L13: -1.3174 L23: 0.2980 REMARK 3 S TENSOR REMARK 3 S11: 0.3204 S12: -0.6355 S13: -0.4925 REMARK 3 S21: 0.4649 S22: -0.3111 S23: -0.2611 REMARK 3 S31: 0.1483 S32: 0.1941 S33: 0.0437 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8900 83.5954 127.5848 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.2261 REMARK 3 T33: 0.2202 T12: 0.0511 REMARK 3 T13: 0.0735 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.9729 L22: 6.6477 REMARK 3 L33: 1.7070 L12: 0.9559 REMARK 3 L13: 0.4078 L23: 0.6750 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.0886 S13: 0.3856 REMARK 3 S21: 0.7267 S22: 0.1483 S23: 0.5748 REMARK 3 S31: -0.2524 S32: -0.2516 S33: -0.1339 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2158 81.2752 110.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2527 REMARK 3 T33: 0.2301 T12: -0.0091 REMARK 3 T13: -0.0286 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.6624 L22: 6.0289 REMARK 3 L33: 2.9904 L12: 0.9090 REMARK 3 L13: -0.3772 L23: -3.8983 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.2213 S13: 0.1431 REMARK 3 S21: -0.1631 S22: 0.1935 S23: 0.4637 REMARK 3 S31: -0.0344 S32: -0.1634 S33: -0.1497 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9587 100.7574 118.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.3261 REMARK 3 T33: 0.3176 T12: -0.0761 REMARK 3 T13: 0.0389 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 6.0536 L22: 4.3139 REMARK 3 L33: 7.3542 L12: -3.0579 REMARK 3 L13: 2.0422 L23: -5.3432 REMARK 3 S TENSOR REMARK 3 S11: 0.2830 S12: 0.3625 S13: 0.5577 REMARK 3 S21: -0.0012 S22: -0.6793 S23: -0.9612 REMARK 3 S31: -0.4626 S32: 0.9631 S33: 0.4434 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1614 110.5898 111.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.4011 T22: 0.4232 REMARK 3 T33: 0.5756 T12: -0.1148 REMARK 3 T13: 0.0122 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 6.9976 L22: 7.5853 REMARK 3 L33: 8.8150 L12: 1.7558 REMARK 3 L13: -1.6846 L23: -0.4969 REMARK 3 S TENSOR REMARK 3 S11: 0.5246 S12: 0.1037 S13: -0.0664 REMARK 3 S21: 0.3328 S22: -0.3640 S23: -1.4944 REMARK 3 S31: -0.5095 S32: 1.1010 S33: 0.1186 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8812 96.9131 129.3987 REMARK 3 T TENSOR REMARK 3 T11: 0.4064 T22: 0.4127 REMARK 3 T33: 0.2644 T12: -0.0964 REMARK 3 T13: -0.0543 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 3.7199 L22: 7.2474 REMARK 3 L33: 6.6745 L12: 0.9603 REMARK 3 L13: -2.0953 L23: -3.7504 REMARK 3 S TENSOR REMARK 3 S11: 0.2120 S12: -0.8825 S13: -0.1966 REMARK 3 S21: 1.4252 S22: -0.5558 S23: -0.3660 REMARK 3 S31: -0.5961 S32: 0.9091 S33: 0.3233 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7612 95.5978 117.7408 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.1799 REMARK 3 T33: 0.2079 T12: 0.0085 REMARK 3 T13: 0.0449 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0244 L22: 2.5154 REMARK 3 L33: 2.3337 L12: 0.4235 REMARK 3 L13: -0.7368 L23: -2.4327 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -0.1501 S13: 0.1686 REMARK 3 S21: 0.3045 S22: 0.0578 S23: 0.1412 REMARK 3 S31: -0.2325 S32: -0.0342 S33: -0.0706 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6169 97.1051 119.1091 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.1830 REMARK 3 T33: 0.2332 T12: 0.0226 REMARK 3 T13: 0.0398 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.8708 L22: 2.3309 REMARK 3 L33: 4.5898 L12: 2.8885 REMARK 3 L13: -1.6322 L23: -1.7488 REMARK 3 S TENSOR REMARK 3 S11: 0.1789 S12: -0.0141 S13: 0.0059 REMARK 3 S21: 0.3292 S22: -0.0140 S23: 0.0720 REMARK 3 S31: -0.1221 S32: 0.0547 S33: -0.1612 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6943 98.4577 104.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.1768 REMARK 3 T33: 0.2406 T12: -0.0003 REMARK 3 T13: 0.0084 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.8351 L22: 1.6183 REMARK 3 L33: 3.2321 L12: -0.3557 REMARK 3 L13: -0.3776 L23: 1.6346 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0448 S13: 0.1813 REMARK 3 S21: 0.1346 S22: -0.0014 S23: 0.1271 REMARK 3 S31: -0.1455 S32: 0.0035 S33: -0.0151 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6805 98.5083 81.3773 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.3278 REMARK 3 T33: 0.2186 T12: -0.0368 REMARK 3 T13: -0.0431 T23: 0.0835 REMARK 3 L TENSOR REMARK 3 L11: 3.3558 L22: 1.3113 REMARK 3 L33: 0.5218 L12: 0.7604 REMARK 3 L13: -1.2738 L23: -0.0671 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: 0.5695 S13: 0.3361 REMARK 3 S21: -0.3102 S22: 0.2304 S23: 0.2017 REMARK 3 S31: 0.0516 S32: -0.1180 S33: -0.0959 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60583 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 86.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.91800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.82600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.15900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.55400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.15900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.82600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.55400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 VAL A 159 CG1 CG2 REMARK 470 GLU A 180 OE1 OE2 REMARK 470 GLN B 14 CD OE1 NE2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 GLU B 180 CD OE1 OE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 17 OG SER B 19 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 66.81 -114.44 REMARK 500 LEU A 29 57.38 -64.92 REMARK 500 ARG B 17 -147.52 -65.91 REMARK 500 SER B 19 -170.68 151.02 REMARK 500 TYR B 111 -125.43 56.79 REMARK 500 ASP B 135 69.80 -100.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6GU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOH A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOH B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOH GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOH SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOH GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOH SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET 6GU A 301 11 HET 6GU B 301 11 HET SO4 B 302 5 HETNAM 6GU 6-CHLOROGUANINE HETNAM SO4 SULFATE ION HETSYN 6GU 6-CHLORO-9H-PURIN-2-AMINE FORMUL 3 6GU 2(C5 H4 CL N5) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *277(H2 O) HELIX 1 AA1 PHE A 9 GLN A 14 1 6 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 LEU A 227 5 4 HELIX 10 AB1 PHE B 9 ARG B 17 5 9 HELIX 11 AB2 SER B 19 ALA B 27 1 9 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 ASP B 115 ALA B 123 1 9 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 196 SER B 201 1 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.24 CISPEP 2 ARG B 186 PRO B 187 0 2.73 SITE 1 AC1 13 PRO A 83 THR A 84 PRO A 85 TYR A 111 SITE 2 AC1 13 VAL A 131 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 13 TYR A 136 LEU A 138 GLY A 140 ALA A 144 SITE 4 AC1 13 HOH A 483 SITE 1 AC2 13 PRO B 83 THR B 84 PRO B 85 VAL B 131 SITE 2 AC2 13 SER B 132 ILE B 133 GLY B 134 TYR B 136 SITE 3 AC2 13 GLY B 140 GLY B 141 ALA B 144 HOH B 413 SITE 4 AC2 13 HOH B 449 SITE 1 AC3 9 ALA A 123 MET A 126 ARG A 127 THR A 185 SITE 2 AC3 9 ARG A 186 ASP B 50 SER B 51 TYR B 53 SITE 3 AC3 9 HOH B 417 CRYST1 73.652 79.108 86.318 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012641 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011585 0.00000