HEADER TRANSFERASE 12-FEB-19 6QOI TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 12 (2- TITLE 3 AMINOBENZOTHIAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: TRMD, MAB_3226C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOI 1 REMARK REVDAT 3 26-AUG-20 6QOI 1 JRNL REVDAT 2 05-AUG-20 6QOI 1 JRNL REVDAT 1 26-FEB-20 6QOI 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7926 - 4.6778 1.00 2696 195 0.1781 0.1948 REMARK 3 2 4.6778 - 3.7135 1.00 2584 184 0.1548 0.2010 REMARK 3 3 3.7135 - 3.2442 1.00 2591 150 0.1961 0.2376 REMARK 3 4 3.2442 - 2.9476 1.00 2547 156 0.2180 0.2557 REMARK 3 5 2.9476 - 2.7364 1.00 2558 161 0.2332 0.2672 REMARK 3 6 2.7364 - 2.5751 1.00 2585 121 0.2207 0.2193 REMARK 3 7 2.5751 - 2.4461 1.00 2611 83 0.2101 0.2551 REMARK 3 8 2.4461 - 2.3396 1.00 2554 131 0.1990 0.2127 REMARK 3 9 2.3396 - 2.2496 1.00 2538 133 0.1963 0.2462 REMARK 3 10 2.2496 - 2.1720 1.00 2549 141 0.2049 0.2480 REMARK 3 11 2.1720 - 2.1040 1.00 2569 125 0.2102 0.2703 REMARK 3 12 2.1040 - 2.0439 1.00 2538 119 0.2039 0.2479 REMARK 3 13 2.0439 - 1.9901 1.00 2543 120 0.2126 0.2391 REMARK 3 14 1.9901 - 1.9415 1.00 2498 144 0.2264 0.2585 REMARK 3 15 1.9415 - 1.8974 1.00 2549 138 0.2472 0.2749 REMARK 3 16 1.8974 - 1.8570 1.00 2527 127 0.2714 0.3200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3252 REMARK 3 ANGLE : 1.066 4452 REMARK 3 CHIRALITY : 0.043 506 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 11.983 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9534 12.2748 -23.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.5547 REMARK 3 T33: 0.3638 T12: 0.0286 REMARK 3 T13: 0.0272 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3177 L22: 4.4620 REMARK 3 L33: 3.0600 L12: -0.1311 REMARK 3 L13: -0.2340 L23: 1.1206 REMARK 3 S TENSOR REMARK 3 S11: 0.3129 S12: 0.8614 S13: 0.1366 REMARK 3 S21: -0.5947 S22: -0.3004 S23: -0.2279 REMARK 3 S31: -0.0841 S32: -0.5590 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3478 21.2007 -14.6812 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.5022 REMARK 3 T33: 0.3229 T12: 0.1117 REMARK 3 T13: -0.0133 T23: 0.1079 REMARK 3 L TENSOR REMARK 3 L11: 4.2991 L22: 4.0576 REMARK 3 L33: 3.8438 L12: -1.7143 REMARK 3 L13: -2.0069 L23: 1.7104 REMARK 3 S TENSOR REMARK 3 S11: 0.3339 S12: 0.8030 S13: 0.3461 REMARK 3 S21: -0.6064 S22: -0.0723 S23: 0.2754 REMARK 3 S31: -0.5823 S32: -0.5409 S33: -0.1237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1632 17.9795 -6.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.2114 T22: 0.3013 REMARK 3 T33: 0.3560 T12: -0.0159 REMARK 3 T13: 0.0125 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.7938 L22: 1.9286 REMARK 3 L33: 3.0692 L12: -1.3761 REMARK 3 L13: -1.5783 L23: 0.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.1693 S13: 0.2883 REMARK 3 S21: -0.1845 S22: 0.1750 S23: -0.1472 REMARK 3 S31: -0.2141 S32: -0.0844 S33: -0.2109 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7291 4.6202 -12.5841 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.2682 REMARK 3 T33: 0.3376 T12: 0.0080 REMARK 3 T13: 0.0516 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 3.9168 L22: 2.2789 REMARK 3 L33: 4.7645 L12: -0.1256 REMARK 3 L13: -0.9767 L23: 1.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.2682 S12: -0.2745 S13: -0.6260 REMARK 3 S21: 0.0180 S22: -0.0732 S23: 0.2489 REMARK 3 S31: 0.4650 S32: 0.2804 S33: 0.1199 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3790 14.2572 -11.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.3137 REMARK 3 T33: 0.3707 T12: -0.0520 REMARK 3 T13: 0.0317 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.1863 L22: 3.2775 REMARK 3 L33: 3.8909 L12: -1.8465 REMARK 3 L13: -1.4308 L23: 0.2636 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: 0.0537 S13: -0.0050 REMARK 3 S21: -0.4708 S22: 0.0832 S23: -0.3780 REMARK 3 S31: -0.1158 S32: -0.0874 S33: -0.1182 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3049 11.3484 -11.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.2743 REMARK 3 T33: 0.2729 T12: -0.0205 REMARK 3 T13: -0.0079 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.9389 L22: 0.6427 REMARK 3 L33: 0.6820 L12: -0.6473 REMARK 3 L13: -1.0051 L23: 0.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.0242 S13: -0.0510 REMARK 3 S21: -0.1187 S22: 0.0702 S23: -0.0063 REMARK 3 S31: 0.0594 S32: 0.0755 S33: 0.0191 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8321 1.2231 -25.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.4599 T22: 0.3142 REMARK 3 T33: 0.3626 T12: -0.1005 REMARK 3 T13: 0.0157 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 3.0578 L22: 0.9094 REMARK 3 L33: 1.6251 L12: -0.5545 REMARK 3 L13: -0.1026 L23: 0.4922 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.2500 S13: -0.4310 REMARK 3 S21: -0.1383 S22: -0.1456 S23: 0.2700 REMARK 3 S31: 0.3377 S32: -0.0026 S33: -0.1443 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2763 4.2828 -41.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.3941 T22: 0.3512 REMARK 3 T33: 0.2905 T12: -0.1029 REMARK 3 T13: 0.1080 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.4452 L22: 5.2226 REMARK 3 L33: 2.2602 L12: -1.9756 REMARK 3 L13: 0.0250 L23: 0.0859 REMARK 3 S TENSOR REMARK 3 S11: 0.2164 S12: 0.3205 S13: 0.3710 REMARK 3 S21: -0.7982 S22: -0.0249 S23: -0.4185 REMARK 3 S31: -0.3069 S32: 0.3605 S33: -0.1732 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0724 2.1325 -24.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.3193 T22: 0.3340 REMARK 3 T33: 0.2890 T12: -0.0104 REMARK 3 T13: -0.0257 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.8465 L22: 4.3964 REMARK 3 L33: 1.8128 L12: -0.0419 REMARK 3 L13: -0.1820 L23: 2.2019 REMARK 3 S TENSOR REMARK 3 S11: 0.1136 S12: -0.1271 S13: 0.1350 REMARK 3 S21: 0.0048 S22: -0.0438 S23: -0.3866 REMARK 3 S31: -0.1432 S32: -0.1370 S33: -0.0320 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9963 17.8769 -36.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.3976 T22: 0.3827 REMARK 3 T33: 0.3046 T12: 0.0144 REMARK 3 T13: 0.0078 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.1826 L22: 3.6791 REMARK 3 L33: 1.6457 L12: -0.7192 REMARK 3 L13: -0.1640 L23: 0.8374 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.1883 S13: 0.0797 REMARK 3 S21: -0.2919 S22: -0.2022 S23: 0.5734 REMARK 3 S31: -0.2758 S32: -0.2839 S33: 0.1332 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3312 19.6146 -16.1515 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.2265 REMARK 3 T33: 0.2913 T12: -0.0017 REMARK 3 T13: 0.0028 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.7026 L22: 0.7022 REMARK 3 L33: 0.2569 L12: -0.0534 REMARK 3 L13: -0.3184 L23: 0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.2190 S13: 0.2638 REMARK 3 S21: -0.0886 S22: 0.0516 S23: -0.0670 REMARK 3 S31: -0.0431 S32: 0.0124 S33: -0.0328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 85.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.84400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.05350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.73400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.73400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.05350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 VAL A 159 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 ARG A 216 NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 GLN B 14 CD OE1 NE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ASP B 31 OD1 OD2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 GLU B 93 CD OE1 OE2 REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 139 CG OD1 ND2 REMARK 470 LEU B 178 CD1 CD2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 9 66.56 -119.04 REMARK 500 VAL A 16 27.15 144.06 REMARK 500 ARG A 17 47.48 -94.36 REMARK 500 GLN A 18 35.72 -97.24 REMARK 500 ASP A 115 125.03 -39.59 REMARK 500 PRO A 157 74.06 -50.95 REMARK 500 GLN B 18 69.73 9.77 REMARK 500 SER B 19 -153.44 -160.46 REMARK 500 TYR B 111 -124.05 55.86 REMARK 500 ASP B 115 124.92 -39.96 REMARK 500 ARG B 223 59.79 -144.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ABV A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ABV B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOI A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOI B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOI GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOI SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOI GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOI SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET ABV A 301 10 HET ABV B 301 10 HETNAM ABV 1,3-BENZOTHIAZOL-2-AMINE HETSYN ABV 2-AMINOBENZOTHIAZOLE FORMUL 3 ABV 2(C7 H6 N2 S) FORMUL 5 HOH *145(H2 O) HELIX 1 AA1 PHE A 9 GLN A 14 5 6 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 LEU A 227 5 4 HELIX 10 AB1 PHE B 9 ARG B 17 5 9 HELIX 11 AB2 SER B 19 ALA B 27 1 9 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 GLN B 116 ALA B 123 1 8 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 196 SER B 201 5 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 ASP A 31 ASP A 36 0 SHEET 2 AA1 6 LYS A 2 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O LEU A 104 N LYS A 2 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.02 CISPEP 2 ARG B 186 PRO B 187 0 0.42 SITE 1 AC1 11 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 11 TYR A 111 SER A 132 GLY A 134 TYR A 136 SITE 3 AC1 11 LEU A 138 GLY A 140 GLY A 141 SITE 1 AC2 9 PRO B 83 PRO B 85 GLY B 109 GLY B 134 SITE 2 AC2 9 TYR B 136 LEU B 138 GLY B 140 GLY B 141 SITE 3 AC2 9 HOH B 460 CRYST1 74.107 79.509 85.468 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011700 0.00000