HEADER TRANSFERASE 12-FEB-19 6QOK TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 14 (METHYL 2- TITLE 3 AMINOPYRIDINE-4-CARBOXYLATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOK 1 REMARK REVDAT 3 26-AUG-20 6QOK 1 JRNL REVDAT 2 05-AUG-20 6QOK 1 JRNL REVDAT 1 26-FEB-20 6QOK 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 85011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.2220 - 4.5843 1.00 2901 157 0.1593 0.2090 REMARK 3 2 4.5843 - 3.6389 1.00 2763 150 0.1386 0.1497 REMARK 3 3 3.6389 - 3.1789 1.00 2750 146 0.1657 0.1848 REMARK 3 4 3.1789 - 2.8883 1.00 2750 129 0.1733 0.2025 REMARK 3 5 2.8883 - 2.6813 1.00 2731 145 0.1799 0.2164 REMARK 3 6 2.6813 - 2.5232 1.00 2697 146 0.1775 0.2061 REMARK 3 7 2.5232 - 2.3968 1.00 2690 149 0.1683 0.1770 REMARK 3 8 2.3968 - 2.2925 1.00 2697 147 0.1668 0.2022 REMARK 3 9 2.2925 - 2.2042 1.00 2676 172 0.1655 0.1970 REMARK 3 10 2.2042 - 2.1282 1.00 2675 142 0.1660 0.1916 REMARK 3 11 2.1282 - 2.0616 1.00 2674 144 0.1710 0.2137 REMARK 3 12 2.0616 - 2.0027 1.00 2692 147 0.1687 0.1858 REMARK 3 13 2.0027 - 1.9500 1.00 2673 150 0.1632 0.1791 REMARK 3 14 1.9500 - 1.9024 1.00 2717 123 0.1615 0.1775 REMARK 3 15 1.9024 - 1.8591 1.00 2674 132 0.1745 0.2148 REMARK 3 16 1.8591 - 1.8196 1.00 2713 109 0.1716 0.2360 REMARK 3 17 1.8196 - 1.7832 1.00 2707 114 0.1763 0.2308 REMARK 3 18 1.7832 - 1.7495 1.00 2650 137 0.1787 0.2121 REMARK 3 19 1.7495 - 1.7183 1.00 2687 144 0.1839 0.2242 REMARK 3 20 1.7183 - 1.6891 1.00 2661 147 0.1896 0.2545 REMARK 3 21 1.6891 - 1.6619 1.00 2641 154 0.1886 0.2271 REMARK 3 22 1.6619 - 1.6363 1.00 2640 152 0.1932 0.2164 REMARK 3 23 1.6363 - 1.6123 1.00 2683 160 0.1986 0.2279 REMARK 3 24 1.6123 - 1.5895 1.00 2652 142 0.2058 0.2381 REMARK 3 25 1.5895 - 1.5681 1.00 2650 120 0.2143 0.2244 REMARK 3 26 1.5681 - 1.5477 1.00 2684 151 0.2330 0.3102 REMARK 3 27 1.5477 - 1.5283 1.00 2682 138 0.2447 0.2703 REMARK 3 28 1.5283 - 1.5099 1.00 2626 141 0.2678 0.2914 REMARK 3 29 1.5099 - 1.4924 1.00 2674 130 0.2845 0.3228 REMARK 3 30 1.4924 - 1.4756 1.00 2653 130 0.3019 0.3318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3441 REMARK 3 ANGLE : 1.052 4716 REMARK 3 CHIRALITY : 0.042 532 REMARK 3 PLANARITY : 0.006 613 REMARK 3 DIHEDRAL : 12.600 1255 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3354 13.5221 -22.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.2143 T22: 0.3019 REMARK 3 T33: 0.2098 T12: 0.0062 REMARK 3 T13: 0.0156 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.6597 L22: 1.1315 REMARK 3 L33: 3.1815 L12: -0.4327 REMARK 3 L13: -0.2443 L23: 1.6825 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.5053 S13: -0.1579 REMARK 3 S21: -0.4481 S22: -0.1752 S23: -0.0836 REMARK 3 S31: -0.0024 S32: -0.1246 S33: 0.0298 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9755 1.1124 -30.9340 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.5844 REMARK 3 T33: 0.6358 T12: -0.0476 REMARK 3 T13: -0.0261 T23: -0.1851 REMARK 3 L TENSOR REMARK 3 L11: 0.0061 L22: 0.0170 REMARK 3 L33: 0.0211 L12: 0.0033 REMARK 3 L13: -0.0135 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0066 S13: -0.1914 REMARK 3 S21: -0.0769 S22: 0.0014 S23: 0.3735 REMARK 3 S31: 0.1250 S32: -0.1345 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5259 23.2957 -10.3346 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2085 REMARK 3 T33: 0.2060 T12: 0.0185 REMARK 3 T13: 0.0171 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.5810 L22: 1.1905 REMARK 3 L33: 2.0968 L12: -0.1397 REMARK 3 L13: -0.0757 L23: 0.5057 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: 0.1630 S13: 0.2229 REMARK 3 S21: -0.1195 S22: 0.0612 S23: -0.1061 REMARK 3 S31: -0.2603 S32: -0.0556 S33: -0.0693 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9018 9.4155 -10.7143 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1556 REMARK 3 T33: 0.1722 T12: -0.0107 REMARK 3 T13: 0.0064 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.7696 L22: 0.6132 REMARK 3 L33: 1.4402 L12: -0.5577 REMARK 3 L13: -0.8975 L23: 0.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.0442 S12: -0.0030 S13: -0.1218 REMARK 3 S21: -0.0537 S22: 0.0284 S23: 0.0181 REMARK 3 S31: 0.0638 S32: -0.0426 S33: 0.0501 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2333 11.2191 -11.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1565 REMARK 3 T33: 0.1733 T12: -0.0024 REMARK 3 T13: -0.0025 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.3141 L22: 0.4465 REMARK 3 L33: 1.0131 L12: -0.1228 REMARK 3 L13: -0.6747 L23: 0.1131 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.0190 S13: -0.0694 REMARK 3 S21: -0.0192 S22: 0.0236 S23: -0.0392 REMARK 3 S31: 0.0209 S32: -0.0256 S33: 0.0200 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4242 -0.7370 -26.6589 REMARK 3 T TENSOR REMARK 3 T11: 0.3856 T22: 0.3295 REMARK 3 T33: 0.3400 T12: -0.0233 REMARK 3 T13: -0.0380 T23: -0.1351 REMARK 3 L TENSOR REMARK 3 L11: 1.6000 L22: 1.1974 REMARK 3 L33: 0.4998 L12: 0.8890 REMARK 3 L13: -0.8242 L23: -0.3142 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.0729 S13: -0.1312 REMARK 3 S21: -0.1643 S22: -0.2255 S23: 0.1709 REMARK 3 S31: 0.1993 S32: -0.1881 S33: -0.1935 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8405 4.5119 -36.3550 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.1645 REMARK 3 T33: 0.1400 T12: -0.0334 REMARK 3 T13: 0.0025 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.3973 L22: 0.8341 REMARK 3 L33: 2.0870 L12: -0.4235 REMARK 3 L13: -0.5715 L23: 0.5992 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: 0.0790 S13: -0.0243 REMARK 3 S21: -0.2814 S22: -0.0882 S23: -0.0842 REMARK 3 S31: 0.3077 S32: -0.0304 S33: 0.0087 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7153 4.1599 -41.2038 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.2189 REMARK 3 T33: 0.2193 T12: -0.0316 REMARK 3 T13: 0.0388 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.9124 L22: 2.0582 REMARK 3 L33: 1.0252 L12: -0.5195 REMARK 3 L13: -0.2246 L23: -0.5399 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.0238 S13: 0.1326 REMARK 3 S21: -0.3722 S22: 0.1218 S23: -0.3750 REMARK 3 S31: -0.0487 S32: 0.1972 S33: 0.0018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0192 1.9825 -24.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2357 REMARK 3 T33: 0.1739 T12: 0.0295 REMARK 3 T13: -0.0302 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.1823 L22: 2.4222 REMARK 3 L33: 1.9453 L12: -0.6673 REMARK 3 L13: -0.8448 L23: 1.9070 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: -0.1812 S13: 0.1136 REMARK 3 S21: 0.1302 S22: 0.1462 S23: -0.3202 REMARK 3 S31: 0.0917 S32: 0.1732 S33: -0.0247 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6168 17.9191 -36.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.2323 REMARK 3 T33: 0.2044 T12: 0.0155 REMARK 3 T13: -0.0069 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.9016 L22: 1.2940 REMARK 3 L33: 1.4483 L12: -0.6190 REMARK 3 L13: -0.6626 L23: 0.6038 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.1800 S13: 0.0279 REMARK 3 S21: -0.1506 S22: -0.1470 S23: 0.3967 REMARK 3 S31: -0.2635 S32: -0.2611 S33: -0.0776 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7619 19.6600 -26.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.1407 REMARK 3 T33: 0.1708 T12: -0.0161 REMARK 3 T13: 0.0088 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1222 L22: 0.6200 REMARK 3 L33: 1.4914 L12: -0.2571 REMARK 3 L13: -0.7824 L23: 0.4849 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.0194 S13: 0.1248 REMARK 3 S21: -0.1455 S22: 0.0241 S23: -0.0480 REMARK 3 S31: -0.1387 S32: 0.0229 S33: -0.1049 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6231 19.6321 4.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.2906 REMARK 3 T33: 0.2258 T12: 0.0135 REMARK 3 T13: -0.0322 T23: -0.0591 REMARK 3 L TENSOR REMARK 3 L11: 1.9796 L22: 0.5837 REMARK 3 L33: 0.3882 L12: -0.3184 REMARK 3 L13: -0.6987 L23: 0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: -0.3846 S13: 0.2675 REMARK 3 S21: 0.1859 S22: 0.1491 S23: -0.1740 REMARK 3 S31: 0.0410 S32: 0.1325 S33: -0.0596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 86.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.85100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.24200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.31250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.24200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.85100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.31250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ARG A 110 CD NE CZ NH1 NH2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 LEU B 160 CG CD1 CD2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 125.61 -39.67 REMARK 500 ARG A 223 59.87 -142.55 REMARK 500 SER B 19 -136.11 36.95 REMARK 500 TYR B 111 -137.59 55.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9T A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J9T B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOK A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOK B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOK GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOK SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOK GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOK SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET J9T A 301 11 HET SO4 A 302 5 HET J9T B 301 11 HET SO4 B 302 5 HETNAM J9T METHYL 2-AZANYLPYRIDINE-4-CARBOXYLATE HETNAM SO4 SULFATE ION FORMUL 3 J9T 2(C7 H8 N2 O2) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *334(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 ASP A 115 ALA A 123 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 GLN B 18 ALA B 27 1 10 HELIX 14 AB5 ARG B 38 THR B 41 5 4 HELIX 15 AB6 LYS B 62 CYS B 74 1 13 HELIX 16 AB7 THR B 91 SER B 99 1 9 HELIX 17 AB8 GLN B 116 THR B 124 1 9 HELIX 18 AB9 GLY B 141 ARG B 154 1 14 HELIX 19 AC1 PRO B 196 SER B 201 5 6 HELIX 20 AC2 ASP B 203 ARG B 223 1 21 HELIX 21 AC3 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.44 CISPEP 2 ARG B 186 PRO B 187 0 3.23 SITE 1 AC1 13 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 13 TYR A 111 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 13 TYR A 136 LEU A 138 GLY A 140 GLY A 141 SITE 4 AC1 13 ALA A 144 SITE 1 AC2 8 ALA A 123 MET A 126 THR A 185 ARG A 186 SITE 2 AC2 8 HOH A 411 ASP B 50 SER B 51 TYR B 53 SITE 1 AC3 10 PRO B 83 THR B 84 PRO B 85 SER B 132 SITE 2 AC3 10 ILE B 133 GLY B 134 TYR B 136 LEU B 138 SITE 3 AC3 10 GLY B 140 GLY B 141 SITE 1 AC4 3 ARG B 127 ARG B 129 HOH B 430 CRYST1 73.702 78.625 86.484 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011563 0.00000