HEADER TRANSFERASE 12-FEB-19 6QOL TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 15 (6- TITLE 3 QUINOXALINAMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOL 1 REMARK REVDAT 3 26-AUG-20 6QOL 1 JRNL REVDAT 2 05-AUG-20 6QOL 1 JRNL REVDAT 1 26-FEB-20 6QOL 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.3218 - 4.6911 1.00 2747 134 0.1726 0.1845 REMARK 3 2 4.6911 - 3.7237 1.00 2600 148 0.1524 0.1674 REMARK 3 3 3.7237 - 3.2531 1.00 2582 140 0.1833 0.2141 REMARK 3 4 3.2531 - 2.9557 1.00 2535 172 0.1973 0.2506 REMARK 3 5 2.9557 - 2.7438 1.00 2552 151 0.2186 0.2332 REMARK 3 6 2.7438 - 2.5820 1.00 2547 137 0.2034 0.2842 REMARK 3 7 2.5820 - 2.4527 1.00 2504 160 0.1928 0.2416 REMARK 3 8 2.4527 - 2.3460 1.00 2526 141 0.1916 0.1871 REMARK 3 9 2.3460 - 2.2557 1.00 2533 145 0.1967 0.2040 REMARK 3 10 2.2557 - 2.1778 1.00 2530 130 0.1945 0.2540 REMARK 3 11 2.1778 - 2.1097 1.00 2542 115 0.2134 0.2423 REMARK 3 12 2.1097 - 2.0494 1.00 2545 125 0.2179 0.2398 REMARK 3 13 2.0494 - 1.9955 1.00 2527 128 0.2264 0.2670 REMARK 3 14 1.9955 - 1.9468 1.00 2521 114 0.2345 0.2742 REMARK 3 15 1.9468 - 1.9025 1.00 2517 139 0.2663 0.3277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3340 REMARK 3 ANGLE : 1.063 4571 REMARK 3 CHIRALITY : 0.045 515 REMARK 3 PLANARITY : 0.005 594 REMARK 3 DIHEDRAL : 12.450 1208 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3701 11.9429 -23.8176 REMARK 3 T TENSOR REMARK 3 T11: 0.4568 T22: 0.7031 REMARK 3 T33: 0.3565 T12: -0.0048 REMARK 3 T13: 0.0047 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 1.6724 L22: 2.6591 REMARK 3 L33: 2.9227 L12: -0.4993 REMARK 3 L13: -0.3575 L23: 0.9893 REMARK 3 S TENSOR REMARK 3 S11: 0.1860 S12: 1.1833 S13: -0.1009 REMARK 3 S21: -0.8031 S22: -0.0644 S23: 0.1099 REMARK 3 S31: -0.0985 S32: -0.4107 S33: -0.2184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2708 20.0402 -15.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.3521 T22: 0.4394 REMARK 3 T33: 0.2667 T12: 0.0775 REMARK 3 T13: -0.0247 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 4.7176 L22: 6.1597 REMARK 3 L33: 4.1035 L12: -2.6352 REMARK 3 L13: -1.8045 L23: 2.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.2729 S12: 0.5128 S13: 0.1892 REMARK 3 S21: -0.3627 S22: -0.0385 S23: 0.1803 REMARK 3 S31: -0.4880 S32: -0.5514 S33: -0.0812 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4444 17.3345 -6.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.2440 T22: 0.3227 REMARK 3 T33: 0.3178 T12: -0.0014 REMARK 3 T13: -0.0090 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.2237 L22: 1.9235 REMARK 3 L33: 3.3240 L12: -1.2932 REMARK 3 L13: -1.3482 L23: 0.8277 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: -0.0009 S13: 0.1472 REMARK 3 S21: -0.0595 S22: 0.1625 S23: -0.0468 REMARK 3 S31: -0.1400 S32: -0.0841 S33: -0.2044 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0421 4.2924 -12.7020 REMARK 3 T TENSOR REMARK 3 T11: 0.3938 T22: 0.2553 REMARK 3 T33: 0.4051 T12: 0.0444 REMARK 3 T13: 0.0613 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.9417 L22: 0.5402 REMARK 3 L33: 3.7188 L12: 1.0349 REMARK 3 L13: 0.5978 L23: 0.6808 REMARK 3 S TENSOR REMARK 3 S11: -0.2280 S12: -0.1063 S13: -0.5679 REMARK 3 S21: 0.0999 S22: -0.0238 S23: 0.2911 REMARK 3 S31: 0.6235 S32: 0.2111 S33: 0.2218 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5029 13.7641 -11.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.2586 T22: 0.2990 REMARK 3 T33: 0.3648 T12: -0.0531 REMARK 3 T13: 0.0197 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5481 L22: 4.4802 REMARK 3 L33: 4.1601 L12: 0.2466 REMARK 3 L13: -0.3233 L23: 1.1122 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 0.0710 S13: -0.1499 REMARK 3 S21: -0.7640 S22: 0.1915 S23: -0.4719 REMARK 3 S31: -0.3122 S32: 0.0047 S33: -0.1297 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4824 11.1268 -11.5623 REMARK 3 T TENSOR REMARK 3 T11: 0.2489 T22: 0.2518 REMARK 3 T33: 0.2387 T12: -0.0081 REMARK 3 T13: -0.0229 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.5086 L22: 1.0421 REMARK 3 L33: 1.2447 L12: -0.8331 REMARK 3 L13: -0.8457 L23: 0.4613 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: -0.0824 S13: -0.1882 REMARK 3 S21: -0.0590 S22: 0.0708 S23: -0.0721 REMARK 3 S31: 0.0684 S32: 0.1367 S33: 0.0186 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1013 0.3640 -25.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.5442 T22: 0.2540 REMARK 3 T33: 0.5745 T12: -0.0746 REMARK 3 T13: -0.1483 T23: -0.1937 REMARK 3 L TENSOR REMARK 3 L11: 4.7259 L22: 1.1321 REMARK 3 L33: 2.1700 L12: 2.1603 REMARK 3 L13: -0.5648 L23: -0.8110 REMARK 3 S TENSOR REMARK 3 S11: -0.2026 S12: 0.3533 S13: -0.5330 REMARK 3 S21: -0.8017 S22: 0.0076 S23: 0.3718 REMARK 3 S31: 0.5032 S32: 0.0344 S33: -0.3317 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0413 3.5224 -32.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.3255 T22: 0.3226 REMARK 3 T33: 0.2981 T12: -0.0016 REMARK 3 T13: 0.0141 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.0764 L22: 1.8341 REMARK 3 L33: 1.0109 L12: -0.3216 REMARK 3 L13: -0.1031 L23: 0.1941 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: 0.0076 S13: 0.1013 REMARK 3 S21: -0.2263 S22: 0.1351 S23: -0.3323 REMARK 3 S31: -0.1240 S32: 0.3901 S33: -0.1512 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4468 18.2458 -36.0601 REMARK 3 T TENSOR REMARK 3 T11: 0.4085 T22: 0.4095 REMARK 3 T33: 0.3561 T12: 0.0401 REMARK 3 T13: 0.0116 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.0907 L22: 3.3837 REMARK 3 L33: 2.8007 L12: -1.1231 REMARK 3 L13: -1.2957 L23: 1.5282 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: 0.2812 S13: 0.1289 REMARK 3 S21: -0.3194 S22: -0.1718 S23: 0.4631 REMARK 3 S31: -0.5022 S32: -0.4632 S33: -0.0019 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5719 20.0697 -30.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.3654 T22: 0.2664 REMARK 3 T33: 0.3260 T12: -0.0347 REMARK 3 T13: 0.0744 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 1.7999 L22: 1.5414 REMARK 3 L33: 2.4526 L12: -0.4573 REMARK 3 L13: -0.7707 L23: 1.1193 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.1023 S13: 0.2656 REMARK 3 S21: -0.2953 S22: 0.1327 S23: -0.2271 REMARK 3 S31: -0.2313 S32: 0.0732 S33: -0.1443 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8717 19.9379 -18.6817 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2431 REMARK 3 T33: 0.3339 T12: 0.0019 REMARK 3 T13: 0.0344 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 1.6210 L22: 2.4118 REMARK 3 L33: 4.3918 L12: 0.0892 REMARK 3 L13: 0.7631 L23: -1.4272 REMARK 3 S TENSOR REMARK 3 S11: 0.0954 S12: 0.0325 S13: 0.3184 REMARK 3 S21: -0.2570 S22: -0.0028 S23: -0.1118 REMARK 3 S31: -0.2589 S32: -0.1350 S33: 0.0660 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8709 18.8045 4.9999 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.4979 REMARK 3 T33: 0.3526 T12: 0.0178 REMARK 3 T13: -0.0199 T23: -0.1221 REMARK 3 L TENSOR REMARK 3 L11: 2.0339 L22: 0.5743 REMARK 3 L33: -0.0038 L12: 0.0030 REMARK 3 L13: -0.1410 L23: -0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.8141 S13: 0.4312 REMARK 3 S21: 0.2564 S22: 0.1643 S23: -0.0988 REMARK 3 S31: -0.0038 S32: 0.0051 S33: -0.0496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40451 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 78.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.00400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.36450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.30400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.36450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.00400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.30400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ILE A 25 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 LYS A 46 CE NZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 ARG B 110 NE CZ NH1 NH2 REMARK 470 LEU B 160 CG CD1 CD2 REMARK 470 LEU B 178 CD1 CD2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 19 N ASP A 26 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 O - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 18 76.18 -101.58 REMARK 500 THR A 84 135.77 -173.41 REMARK 500 ASP A 115 126.96 -39.23 REMARK 500 ARG B 17 4.73 -69.83 REMARK 500 SER B 19 -156.94 47.54 REMARK 500 THR B 84 138.00 -174.00 REMARK 500 ASP B 115 128.72 -39.93 REMARK 500 VAL B 159 47.72 -87.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB5 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB5 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOL A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOL B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOL GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOL SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOL GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOL SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JB5 A 301 11 HET JB5 B 301 11 HETNAM JB5 QUINOXALIN-6-AMINE FORMUL 3 JB5 2(C8 H7 N3) FORMUL 5 HOH *137(H2 O) HELIX 1 AA1 PHE A 9 GLN A 14 1 6 HELIX 2 AA2 ARG A 38 THR A 41 5 4 HELIX 3 AA3 LYS A 62 CYS A 74 1 13 HELIX 4 AA4 THR A 91 SER A 99 1 9 HELIX 5 AA5 ASP A 115 ALA A 123 1 9 HELIX 6 AA6 GLY A 141 ARG A 154 1 14 HELIX 7 AA7 PRO A 196 SER A 201 5 6 HELIX 8 AA8 ASP A 203 ARG A 223 1 21 HELIX 9 AA9 PRO A 224 LEU A 227 5 4 HELIX 10 AB1 PHE B 9 ARG B 17 5 9 HELIX 11 AB2 GLN B 18 ALA B 27 1 10 HELIX 12 AB3 ARG B 38 THR B 41 5 4 HELIX 13 AB4 LYS B 62 CYS B 74 1 13 HELIX 14 AB5 THR B 91 SER B 99 1 9 HELIX 15 AB6 GLN B 116 ALA B 123 1 8 HELIX 16 AB7 GLY B 141 ARG B 154 1 14 HELIX 17 AB8 PRO B 196 SER B 201 1 6 HELIX 18 AB9 ASP B 203 ARG B 223 1 21 HELIX 19 AC1 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 0.85 CISPEP 2 ARG B 186 PRO B 187 0 2.64 SITE 1 AC1 10 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 10 TYR A 111 TYR A 136 LEU A 138 GLY A 140 SITE 3 AC1 10 GLY A 141 HOH A 442 SITE 1 AC2 9 PRO B 83 THR B 84 GLY B 109 TYR B 111 SITE 2 AC2 9 TYR B 136 LEU B 138 GLY B 140 GLY B 141 SITE 3 AC2 9 HOH B 448 CRYST1 74.008 78.608 86.729 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011530 0.00000