HEADER TRANSFERASE 12-FEB-19 6QOT TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 23 (3-AMINO-5-(4- TITLE 3 METHOXYPHENYL)PYRAZOLE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOT 1 REMARK REVDAT 3 26-AUG-20 6QOT 1 JRNL REVDAT 2 05-AUG-20 6QOT 1 JRNL REVDAT 1 26-FEB-20 6QOT 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 67060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.0951 - 4.6666 1.00 2837 160 0.1751 0.2141 REMARK 3 2 4.6666 - 3.7043 1.00 2755 130 0.1568 0.1654 REMARK 3 3 3.7043 - 3.2361 1.00 2699 155 0.1844 0.2156 REMARK 3 4 3.2361 - 2.9402 1.00 2661 156 0.1962 0.2220 REMARK 3 5 2.9402 - 2.7295 1.00 2673 128 0.2020 0.2378 REMARK 3 6 2.7295 - 2.5685 1.00 2667 152 0.1990 0.2390 REMARK 3 7 2.5685 - 2.4399 1.00 2635 169 0.1819 0.2035 REMARK 3 8 2.4399 - 2.3337 1.00 2644 140 0.1809 0.1876 REMARK 3 9 2.3337 - 2.2438 1.00 2668 129 0.1792 0.2519 REMARK 3 10 2.2438 - 2.1664 1.00 2664 147 0.1861 0.2033 REMARK 3 11 2.1664 - 2.0987 1.00 2599 140 0.1899 0.2167 REMARK 3 12 2.0987 - 2.0387 1.00 2659 125 0.1900 0.2165 REMARK 3 13 2.0387 - 1.9850 1.00 2647 112 0.1819 0.2401 REMARK 3 14 1.9850 - 1.9366 1.00 2664 122 0.1767 0.2376 REMARK 3 15 1.9366 - 1.8926 1.00 2648 118 0.1795 0.2084 REMARK 3 16 1.8926 - 1.8523 1.00 2657 130 0.1838 0.2195 REMARK 3 17 1.8523 - 1.8152 1.00 2630 124 0.1889 0.2088 REMARK 3 18 1.8152 - 1.7810 1.00 2633 127 0.1942 0.2401 REMARK 3 19 1.7810 - 1.7492 1.00 2589 160 0.2039 0.2217 REMARK 3 20 1.7492 - 1.7195 1.00 2623 147 0.2074 0.2542 REMARK 3 21 1.7195 - 1.6918 1.00 2627 140 0.2149 0.2404 REMARK 3 22 1.6918 - 1.6657 1.00 2633 137 0.2129 0.2553 REMARK 3 23 1.6657 - 1.6412 1.00 2582 147 0.2243 0.2595 REMARK 3 24 1.6412 - 1.6181 1.00 2624 147 0.2444 0.2665 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3360 REMARK 3 ANGLE : 1.028 4601 REMARK 3 CHIRALITY : 0.049 521 REMARK 3 PLANARITY : 0.006 597 REMARK 3 DIHEDRAL : 12.461 1215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3555 13.5374 -23.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.3174 T22: 0.3910 REMARK 3 T33: 0.2265 T12: -0.0081 REMARK 3 T13: 0.0171 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.1684 L22: 0.1936 REMARK 3 L33: 1.9157 L12: -0.2211 REMARK 3 L13: -0.3695 L23: -0.4283 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.6651 S13: -0.1271 REMARK 3 S21: -0.6602 S22: -0.1393 S23: -0.0362 REMARK 3 S31: 0.2467 S32: -0.2668 S33: 0.0781 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.6050 19.1097 -14.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.2667 REMARK 3 T33: 0.2586 T12: 0.0083 REMARK 3 T13: -0.0079 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.5461 L22: 0.8280 REMARK 3 L33: 1.9676 L12: 0.0206 REMARK 3 L13: -0.5812 L23: 0.2970 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.1268 S13: 0.0375 REMARK 3 S21: -0.1617 S22: 0.0963 S23: -0.0726 REMARK 3 S31: -0.1170 S32: -0.1505 S33: -0.1145 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0046 10.3967 -11.3175 REMARK 3 T TENSOR REMARK 3 T11: 0.1748 T22: 0.1606 REMARK 3 T33: 0.1805 T12: -0.0152 REMARK 3 T13: -0.0012 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.6062 L22: 0.3595 REMARK 3 L33: 1.8783 L12: -0.1723 REMARK 3 L13: -0.8772 L23: 0.0338 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.0276 S13: -0.0504 REMARK 3 S21: -0.0418 S22: 0.0385 S23: 0.0160 REMARK 3 S31: 0.0514 S32: -0.0653 S33: -0.0044 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9017 0.6256 -25.2418 REMARK 3 T TENSOR REMARK 3 T11: 0.3494 T22: 0.1849 REMARK 3 T33: 0.3903 T12: -0.0220 REMARK 3 T13: -0.0581 T23: -0.1141 REMARK 3 L TENSOR REMARK 3 L11: 5.3938 L22: 0.4929 REMARK 3 L33: 2.3417 L12: -0.2144 REMARK 3 L13: -0.0899 L23: -0.7477 REMARK 3 S TENSOR REMARK 3 S11: 0.2214 S12: 0.0406 S13: -0.7226 REMARK 3 S21: -0.1723 S22: -0.3188 S23: 0.3401 REMARK 3 S31: 0.4004 S32: -0.0760 S33: -0.3659 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4276 4.6103 -41.3446 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.2392 REMARK 3 T33: 0.2107 T12: -0.0360 REMARK 3 T13: 0.0436 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.0749 L22: 2.7131 REMARK 3 L33: 1.0847 L12: -0.8090 REMARK 3 L13: 0.0519 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.0145 S13: 0.1498 REMARK 3 S21: -0.4685 S22: 0.0818 S23: -0.3824 REMARK 3 S31: -0.1294 S32: 0.2144 S33: -0.0287 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7520 2.1629 -24.4784 REMARK 3 T TENSOR REMARK 3 T11: 0.2340 T22: 0.2851 REMARK 3 T33: 0.2304 T12: 0.0392 REMARK 3 T13: -0.0549 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.3604 L22: 2.3662 REMARK 3 L33: 1.9265 L12: -1.1377 REMARK 3 L13: -1.5628 L23: 1.8634 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: -0.2154 S13: 0.2061 REMARK 3 S21: 0.2138 S22: 0.2061 S23: -0.2151 REMARK 3 S31: 0.1124 S32: 0.3436 S33: -0.0408 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5565 22.1576 -36.5128 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.3616 REMARK 3 T33: 0.3109 T12: 0.0734 REMARK 3 T13: -0.0301 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 4.0806 L22: 4.6590 REMARK 3 L33: 3.6993 L12: 1.2763 REMARK 3 L13: 0.5066 L23: 0.4168 REMARK 3 S TENSOR REMARK 3 S11: 0.1822 S12: 0.2569 S13: 0.4237 REMARK 3 S21: -0.1499 S22: -0.2360 S23: 0.7201 REMARK 3 S31: -0.2836 S32: -0.7725 S33: -0.0174 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3134 17.3371 -30.2957 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1499 REMARK 3 T33: 0.1790 T12: -0.0171 REMARK 3 T13: 0.0066 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4491 L22: 1.0444 REMARK 3 L33: 1.9076 L12: -0.1667 REMARK 3 L13: -0.7454 L23: 0.7559 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0901 S13: 0.1263 REMARK 3 S21: -0.2164 S22: -0.0053 S23: -0.0246 REMARK 3 S31: -0.2051 S32: 0.0203 S33: -0.0233 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5946 27.3462 -8.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.3811 T22: 0.3338 REMARK 3 T33: 0.5211 T12: -0.0736 REMARK 3 T13: -0.0669 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.2837 L22: 1.6705 REMARK 3 L33: 3.6548 L12: 1.4739 REMARK 3 L13: -2.1022 L23: -2.4341 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: 0.0227 S13: 0.1512 REMARK 3 S21: 0.3836 S22: 0.0438 S23: -0.2808 REMARK 3 S31: -0.8530 S32: -0.1440 S33: -0.0620 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0270 19.4052 4.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.4514 REMARK 3 T33: 0.2897 T12: 0.0206 REMARK 3 T13: -0.0276 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 1.9525 L22: 1.0285 REMARK 3 L33: 0.2090 L12: -0.4002 REMARK 3 L13: -0.7144 L23: 0.3582 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: -0.5552 S13: 0.3334 REMARK 3 S21: 0.2736 S22: 0.1848 S23: -0.1593 REMARK 3 S31: 0.0211 S32: 0.0603 S33: -0.0198 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 87.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.64550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.72900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.46250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.72900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.64550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.46250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 39 CZ NH1 NH2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 14 CD OE1 NE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 VAL B 159 CG1 CG2 REMARK 470 LEU B 160 CG CD1 CD2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -137.37 55.69 REMARK 500 SER B 19 135.99 -38.76 REMARK 500 TYR B 111 -139.18 55.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6SD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6SD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOT A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOT B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOT GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOT SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOT GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOT SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET 6SD A 301 14 HET 6SD B 301 14 HET EDO B 302 4 HETNAM 6SD 3-(4-METHOXYPHENYL)-1~{H}-PYRAZOL-5-AMINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 6SD 2(C10 H11 N3 O) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *261(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.94 CISPEP 2 ARG B 186 PRO B 187 0 1.91 SITE 1 AC1 13 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 13 ARG A 110 TYR A 111 SER A 132 ILE A 133 SITE 3 AC1 13 GLY A 134 TYR A 136 LEU A 138 GLY A 140 SITE 4 AC1 13 GLY A 141 SITE 1 AC2 14 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC2 14 ARG B 110 TYR B 111 SER B 132 ILE B 133 SITE 3 AC2 14 GLY B 134 TYR B 136 LEU B 138 GLY B 140 SITE 4 AC2 14 GLY B 141 EDO B 302 SITE 1 AC3 5 PRO B 83 THR B 84 GLY B 113 ILE B 114 SITE 2 AC3 5 6SD B 301 CRYST1 75.291 78.925 87.458 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011434 0.00000