HEADER TRANSFERASE 12-FEB-19 6QOU TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 24 (INDOLE-6-BORONIC TITLE 3 ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOU 1 REMARK REVDAT 3 26-AUG-20 6QOU 1 JRNL REVDAT 2 05-AUG-20 6QOU 1 JRNL REVDAT 1 26-FEB-20 6QOU 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 75337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.6758 - 4.6664 1.00 2849 159 0.1795 0.2112 REMARK 3 2 4.6664 - 3.7040 1.00 2752 133 0.1566 0.1744 REMARK 3 3 3.7040 - 3.2358 1.00 2688 159 0.1803 0.1810 REMARK 3 4 3.2358 - 2.9400 1.00 2681 135 0.1942 0.1970 REMARK 3 5 2.9400 - 2.7293 1.00 2662 136 0.1945 0.2280 REMARK 3 6 2.7293 - 2.5684 1.00 2679 139 0.1978 0.2360 REMARK 3 7 2.5684 - 2.4397 1.00 2637 159 0.1851 0.2131 REMARK 3 8 2.4397 - 2.3335 1.00 2669 120 0.1788 0.1943 REMARK 3 9 2.3335 - 2.2437 1.00 2663 140 0.1791 0.2007 REMARK 3 10 2.2437 - 2.1663 1.00 2652 154 0.1868 0.2156 REMARK 3 11 2.1663 - 2.0985 1.00 2595 140 0.1806 0.1932 REMARK 3 12 2.0985 - 2.0385 1.00 2681 115 0.1878 0.2218 REMARK 3 13 2.0385 - 1.9849 1.00 2618 149 0.1839 0.2412 REMARK 3 14 1.9849 - 1.9364 1.00 2654 117 0.1816 0.2054 REMARK 3 15 1.9364 - 1.8924 1.00 2641 131 0.1790 0.2206 REMARK 3 16 1.8924 - 1.8521 1.00 2669 129 0.1856 0.2227 REMARK 3 17 1.8521 - 1.8151 1.00 2624 121 0.1922 0.2299 REMARK 3 18 1.8151 - 1.7808 1.00 2622 147 0.1936 0.2423 REMARK 3 19 1.7808 - 1.7490 1.00 2603 139 0.2016 0.1993 REMARK 3 20 1.7490 - 1.7194 1.00 2612 154 0.2016 0.2060 REMARK 3 21 1.7194 - 1.6916 1.00 2641 131 0.1983 0.1944 REMARK 3 22 1.6916 - 1.6656 1.00 2630 147 0.2042 0.2420 REMARK 3 23 1.6656 - 1.6411 1.00 2609 145 0.2166 0.2328 REMARK 3 24 1.6411 - 1.6180 1.00 2620 124 0.2318 0.2607 REMARK 3 25 1.6180 - 1.5961 1.00 2600 148 0.2340 0.2809 REMARK 3 26 1.5961 - 1.5754 1.00 2625 138 0.2364 0.2600 REMARK 3 27 1.5754 - 1.5557 1.00 2610 142 0.2526 0.2531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3351 REMARK 3 ANGLE : 1.039 4594 REMARK 3 CHIRALITY : 0.051 518 REMARK 3 PLANARITY : 0.005 595 REMARK 3 DIHEDRAL : 12.445 1211 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.0395 92.7473 22.5524 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.4202 REMARK 3 T33: 0.2607 T12: -0.0020 REMARK 3 T13: 0.0200 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.1768 L22: 0.0380 REMARK 3 L33: 0.0828 L12: -0.0586 REMARK 3 L13: 0.0516 L23: 0.0441 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.8195 S13: -0.1658 REMARK 3 S21: 0.6677 S22: -0.2607 S23: -0.0764 REMARK 3 S31: 0.1396 S32: 0.1910 S33: -0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.2801 80.5042 31.3384 REMARK 3 T TENSOR REMARK 3 T11: 0.6326 T22: 0.6721 REMARK 3 T33: 0.6459 T12: 0.1385 REMARK 3 T13: 0.0552 T23: 0.1793 REMARK 3 L TENSOR REMARK 3 L11: -0.0030 L22: 0.0124 REMARK 3 L33: 0.0092 L12: -0.0183 REMARK 3 L13: -0.0072 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.3795 S12: 0.2195 S13: -0.3504 REMARK 3 S21: 0.1663 S22: 0.0381 S23: -0.0708 REMARK 3 S31: 0.0107 S32: 0.1892 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 116.0485 99.4966 15.1729 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.3097 REMARK 3 T33: 0.2601 T12: -0.0290 REMARK 3 T13: 0.0011 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.4408 L22: 0.1686 REMARK 3 L33: 0.2181 L12: -0.2381 REMARK 3 L13: -0.0450 L23: 0.1916 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.1737 S13: 0.1113 REMARK 3 S21: 0.0582 S22: 0.0637 S23: -0.1351 REMARK 3 S31: -0.1414 S32: 0.1987 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.0140 96.7896 6.3745 REMARK 3 T TENSOR REMARK 3 T11: 0.2068 T22: 0.2267 REMARK 3 T33: 0.2580 T12: -0.0012 REMARK 3 T13: 0.0221 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4372 L22: -0.0116 REMARK 3 L33: 0.6737 L12: 0.0614 REMARK 3 L13: 0.0120 L23: 0.0702 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: 0.0047 S13: 0.0578 REMARK 3 S21: 0.1429 S22: 0.0345 S23: 0.0364 REMARK 3 S31: -0.0925 S32: 0.1059 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.0896 88.1327 12.3381 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.2062 REMARK 3 T33: 0.2445 T12: 0.0126 REMARK 3 T13: 0.0320 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.5644 L22: -0.0326 REMARK 3 L33: 0.5568 L12: -0.1038 REMARK 3 L13: -0.1011 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.0608 S13: -0.0626 REMARK 3 S21: 0.0281 S22: 0.0254 S23: 0.0140 REMARK 3 S31: 0.0815 S32: -0.0737 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.9723 90.3729 11.7892 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.2061 REMARK 3 T33: 0.2279 T12: 0.0085 REMARK 3 T13: 0.0112 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.6441 L22: 0.0142 REMARK 3 L33: 0.1030 L12: 0.0673 REMARK 3 L13: -0.0524 L23: -0.1621 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0138 S13: -0.0541 REMARK 3 S21: 0.0203 S22: 0.0220 S23: 0.0265 REMARK 3 S31: 0.0593 S32: -0.0104 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.7301 79.5567 25.2433 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.0572 REMARK 3 T33: 0.2715 T12: 0.0240 REMARK 3 T13: -0.0617 T23: 0.2455 REMARK 3 L TENSOR REMARK 3 L11: 0.3291 L22: 0.6015 REMARK 3 L33: 1.5868 L12: -0.1306 REMARK 3 L13: 0.0834 L23: 0.8340 REMARK 3 S TENSOR REMARK 3 S11: -0.2179 S12: -0.1670 S13: -0.3483 REMARK 3 S21: 0.5917 S22: -0.5238 S23: -0.0948 REMARK 3 S31: 0.3691 S32: -0.4466 S33: -0.4011 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.5067 83.6224 41.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.3230 T22: 0.2592 REMARK 3 T33: 0.2850 T12: 0.0384 REMARK 3 T13: 0.0433 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.1398 L22: 0.1054 REMARK 3 L33: 0.0805 L12: 0.0591 REMARK 3 L13: -0.0345 L23: -0.1221 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: -0.0629 S13: 0.1563 REMARK 3 S21: 0.3438 S22: 0.0153 S23: 0.3290 REMARK 3 S31: -0.0573 S32: -0.1954 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.5247 81.2342 24.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.3237 REMARK 3 T33: 0.2778 T12: -0.0421 REMARK 3 T13: -0.0563 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 0.1231 L22: 0.0020 REMARK 3 L33: 0.0180 L12: -0.0812 REMARK 3 L13: -0.1769 L23: -0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0780 S13: 0.1702 REMARK 3 S21: -0.1663 S22: 0.2091 S23: 0.3840 REMARK 3 S31: 0.1161 S32: -0.2175 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.7764 101.0280 36.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.3268 REMARK 3 T33: 0.2859 T12: -0.0483 REMARK 3 T13: -0.0333 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.5246 L22: 0.3289 REMARK 3 L33: 0.2669 L12: -0.2258 REMARK 3 L13: 0.1250 L23: 0.1767 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.1277 S13: 0.1300 REMARK 3 S21: 0.0729 S22: -0.1017 S23: -0.5165 REMARK 3 S31: -0.3030 S32: 0.4704 S33: 0.0007 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.1485 95.5471 31.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.1903 REMARK 3 T33: 0.1904 T12: 0.0289 REMARK 3 T13: 0.0105 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8842 L22: 0.4173 REMARK 3 L33: 0.7992 L12: 0.2871 REMARK 3 L13: -0.5472 L23: -0.3988 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0495 S13: 0.0482 REMARK 3 S21: 0.1183 S22: 0.0158 S23: 0.0698 REMARK 3 S31: -0.1161 S32: -0.0563 S33: -0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.9651 103.1717 16.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2192 REMARK 3 T33: 0.2771 T12: 0.0010 REMARK 3 T13: -0.0235 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.3575 L22: 0.1164 REMARK 3 L33: 0.0694 L12: 0.0454 REMARK 3 L13: -0.0780 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0012 S13: 0.1617 REMARK 3 S21: 0.0630 S22: -0.0461 S23: 0.0076 REMARK 3 S31: -0.0441 S32: 0.0510 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.1310 98.5087 -4.7816 REMARK 3 T TENSOR REMARK 3 T11: 0.2544 T22: 0.3650 REMARK 3 T33: 0.2567 T12: -0.0194 REMARK 3 T13: -0.0331 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 0.3981 L22: 0.4780 REMARK 3 L33: -0.3217 L12: -0.4111 REMARK 3 L13: -0.3413 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.2476 S13: 0.1416 REMARK 3 S21: -0.2258 S22: 0.0911 S23: 0.0948 REMARK 3 S31: 0.0239 S32: -0.0520 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 87.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.59400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.69800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.69800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.59400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CD OE1 NE2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ILE A 25 CG1 CG2 CD1 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ARG A 39 CD NE CZ NH1 NH2 REMARK 470 LYS A 206 CE NZ REMARK 470 ARG A 216 CD NE CZ NH1 NH2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 ILE B 25 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -126.39 54.28 REMARK 500 ARG B 17 21.55 -76.40 REMARK 500 GLN B 18 42.64 -87.39 REMARK 500 HIS B 42 -36.76 -131.69 REMARK 500 TYR B 111 -133.69 54.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB8 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JB8 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOU A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOU B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOU GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOU SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOU GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOU SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JB8 A 301 12 HET JB8 B 301 12 HETNAM JB8 1~{H}-INDOL-6-YLBORONIC ACID FORMUL 3 JB8 2(C8 H8 B N O2) FORMUL 5 HOH *310(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 18 5 10 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.56 CISPEP 2 ARG B 186 PRO B 187 0 2.19 SITE 1 AC1 13 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 13 TYR A 111 TYR A 136 VAL A 137 LEU A 138 SITE 3 AC1 13 ASN A 139 GLY A 141 HOH A 410 HOH A 463 SITE 4 AC1 13 HOH A 485 SITE 1 AC2 11 PRO B 83 PRO B 85 GLY B 109 TYR B 111 SITE 2 AC2 11 TYR B 136 VAL B 137 LEU B 138 GLY B 141 SITE 3 AC2 11 HOH B 410 HOH B 413 HOH B 455 CRYST1 75.188 79.070 87.396 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013300 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011442 0.00000