HEADER TRANSFERASE 12-FEB-19 6QOV TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 25 (6-PHENYL-3- TITLE 3 PYRIDINYL)METHYLAMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 4 15-MAY-24 6QOV 1 REMARK REVDAT 3 26-AUG-20 6QOV 1 JRNL REVDAT 2 05-AUG-20 6QOV 1 JRNL REVDAT 1 26-FEB-20 6QOV 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 3718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7208 - 4.6427 1.00 2916 134 0.1765 0.1940 REMARK 3 2 4.6427 - 3.6852 1.00 2771 142 0.1580 0.1834 REMARK 3 3 3.6852 - 3.2194 1.00 2766 124 0.1791 0.1965 REMARK 3 4 3.2194 - 2.9251 1.00 2723 148 0.1940 0.2562 REMARK 3 5 2.9251 - 2.7154 1.00 2718 128 0.2023 0.1934 REMARK 3 6 2.7154 - 2.5553 1.00 2708 146 0.1917 0.1898 REMARK 3 7 2.5553 - 2.4273 1.00 2689 152 0.1826 0.2036 REMARK 3 8 2.4273 - 2.3217 1.00 2670 152 0.1802 0.1895 REMARK 3 9 2.3217 - 2.2323 1.00 2689 150 0.1763 0.2073 REMARK 3 10 2.2323 - 2.1553 1.00 2700 134 0.1788 0.1974 REMARK 3 11 2.1553 - 2.0879 1.00 2657 143 0.1814 0.2133 REMARK 3 12 2.0879 - 2.0282 0.99 2676 112 0.1795 0.1910 REMARK 3 13 2.0282 - 1.9748 1.00 2682 157 0.1737 0.2152 REMARK 3 14 1.9748 - 1.9266 1.00 2665 139 0.1741 0.2099 REMARK 3 15 1.9266 - 1.8828 1.00 2657 152 0.1799 0.2171 REMARK 3 16 1.8828 - 1.8427 1.00 2693 125 0.1823 0.2595 REMARK 3 17 1.8427 - 1.8059 1.00 2680 143 0.1788 0.2456 REMARK 3 18 1.8059 - 1.7718 1.00 2687 127 0.1950 0.2049 REMARK 3 19 1.7718 - 1.7401 1.00 2656 143 0.1953 0.2071 REMARK 3 20 1.7401 - 1.7106 1.00 2660 151 0.1879 0.2275 REMARK 3 21 1.7106 - 1.6831 1.00 2635 133 0.2026 0.1998 REMARK 3 22 1.6831 - 1.6572 1.00 2665 152 0.1997 0.2478 REMARK 3 23 1.6572 - 1.6328 0.99 2668 117 0.2081 0.2469 REMARK 3 24 1.6328 - 1.6098 0.99 2654 127 0.2212 0.2398 REMARK 3 25 1.6098 - 1.5880 1.00 2653 116 0.2335 0.2700 REMARK 3 26 1.5880 - 1.5674 1.00 2674 131 0.2331 0.2917 REMARK 3 27 1.5674 - 1.5478 1.00 2659 140 0.2524 0.2632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3346 REMARK 3 ANGLE : 1.023 4587 REMARK 3 CHIRALITY : 0.048 520 REMARK 3 PLANARITY : 0.006 595 REMARK 3 DIHEDRAL : 12.279 1220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.3923 92.6853 22.6614 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.3395 REMARK 3 T33: 0.2211 T12: -0.0251 REMARK 3 T13: -0.0034 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 2.3041 L22: 3.4074 REMARK 3 L33: 3.8313 L12: 1.4920 REMARK 3 L13: -1.2089 L23: -1.3798 REMARK 3 S TENSOR REMARK 3 S11: 0.1429 S12: -0.5667 S13: -0.1099 REMARK 3 S21: 0.7004 S22: -0.2443 S23: -0.0278 REMARK 3 S31: 0.0279 S32: 0.0801 S33: 0.0687 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.1414 94.1277 19.5993 REMARK 3 T TENSOR REMARK 3 T11: 0.2138 T22: 0.2937 REMARK 3 T33: 0.2177 T12: 0.0075 REMARK 3 T13: -0.0333 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.7160 L22: 3.9587 REMARK 3 L33: 3.9160 L12: 0.4400 REMARK 3 L13: -1.3248 L23: -2.2239 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: -0.3499 S13: -0.2814 REMARK 3 S21: 0.0788 S22: 0.0567 S23: -0.1994 REMARK 3 S31: 0.1720 S32: 0.2713 S33: 0.0246 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.7341 97.0508 6.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1922 REMARK 3 T33: 0.1852 T12: -0.0137 REMARK 3 T13: 0.0068 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.5839 L22: 1.4555 REMARK 3 L33: 2.0701 L12: 0.6810 REMARK 3 L13: -0.5899 L23: -0.5704 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0395 S13: 0.0928 REMARK 3 S21: 0.0537 S22: 0.0165 S23: -0.0085 REMARK 3 S31: -0.1222 S32: 0.0982 S33: -0.0454 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.0328 83.4690 13.0394 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.1910 REMARK 3 T33: 0.2308 T12: -0.0270 REMARK 3 T13: 0.0112 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.8460 L22: 1.7800 REMARK 3 L33: 3.5498 L12: -0.4764 REMARK 3 L13: -0.7586 L23: -1.5306 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: 0.0007 S13: -0.3310 REMARK 3 S21: -0.1109 S22: 0.0104 S23: 0.0763 REMARK 3 S31: 0.4180 S32: -0.2342 S33: 0.0998 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.5960 93.5174 11.7841 REMARK 3 T TENSOR REMARK 3 T11: 0.1567 T22: 0.1897 REMARK 3 T33: 0.1845 T12: 0.0005 REMARK 3 T13: -0.0019 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.7747 L22: 0.4785 REMARK 3 L33: 3.0240 L12: 0.4436 REMARK 3 L13: -1.3022 L23: -0.1303 REMARK 3 S TENSOR REMARK 3 S11: -0.0390 S12: -0.0591 S13: 0.1300 REMARK 3 S21: 0.2610 S22: 0.0258 S23: 0.1083 REMARK 3 S31: -0.1991 S32: 0.0068 S33: -0.0756 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.6941 90.4077 11.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1693 REMARK 3 T33: 0.1839 T12: 0.0010 REMARK 3 T13: -0.0096 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.2637 L22: 0.3136 REMARK 3 L33: 1.7913 L12: 0.0897 REMARK 3 L13: -1.2225 L23: -0.0375 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: -0.0090 S13: -0.0262 REMARK 3 S21: 0.0265 S22: 0.0170 S23: 0.0272 REMARK 3 S31: 0.0470 S32: 0.0051 S33: 0.0090 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 90.9116 79.6534 25.6361 REMARK 3 T TENSOR REMARK 3 T11: 0.3738 T22: 0.2709 REMARK 3 T33: 0.3487 T12: 0.0022 REMARK 3 T13: -0.0764 T23: 0.1068 REMARK 3 L TENSOR REMARK 3 L11: 5.1948 L22: 0.3816 REMARK 3 L33: 0.5376 L12: -0.9943 REMARK 3 L13: -0.8428 L23: -0.1169 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: -0.2193 S13: -0.6921 REMARK 3 S21: 0.2317 S22: -0.2756 S23: -0.1933 REMARK 3 S31: 0.3062 S32: 0.1494 S33: 0.1234 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.5908 83.4843 41.1336 REMARK 3 T TENSOR REMARK 3 T11: 0.2485 T22: 0.1897 REMARK 3 T33: 0.1949 T12: 0.0347 REMARK 3 T13: 0.0402 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.7257 L22: 2.7391 REMARK 3 L33: 1.8415 L12: 1.6656 REMARK 3 L13: -0.2754 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: 0.0593 S13: 0.1656 REMARK 3 S21: 0.3720 S22: 0.0379 S23: 0.3313 REMARK 3 S31: -0.1965 S32: -0.2666 S33: -0.0626 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.2871 81.0971 24.5250 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.2869 REMARK 3 T33: 0.2127 T12: -0.0415 REMARK 3 T13: -0.0432 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.3859 L22: 3.6675 REMARK 3 L33: 2.5641 L12: 0.7843 REMARK 3 L13: -1.0810 L23: -2.6771 REMARK 3 S TENSOR REMARK 3 S11: -0.1142 S12: 0.2278 S13: 0.2126 REMARK 3 S21: -0.2710 S22: 0.3029 S23: 0.3218 REMARK 3 S31: 0.0871 S32: -0.4280 S33: -0.1977 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.0489 100.2688 37.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.3021 T22: 0.3366 REMARK 3 T33: 0.2538 T12: -0.0620 REMARK 3 T13: -0.0680 T23: -0.0557 REMARK 3 L TENSOR REMARK 3 L11: 5.2541 L22: 6.5938 REMARK 3 L33: 4.2918 L12: -1.4254 REMARK 3 L13: 0.0235 L23: -1.2105 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: -0.3045 S13: 0.1859 REMARK 3 S21: 0.3373 S22: -0.2267 S23: -0.6744 REMARK 3 S31: -0.3492 S32: 0.7952 S33: 0.0604 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.9004 80.9857 40.4384 REMARK 3 T TENSOR REMARK 3 T11: 0.2505 T22: 0.2506 REMARK 3 T33: 0.2427 T12: 0.0234 REMARK 3 T13: 0.0351 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.8470 L22: 3.3226 REMARK 3 L33: 1.6501 L12: 2.0089 REMARK 3 L13: -0.7316 L23: -2.1654 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: -0.1316 S13: -0.5125 REMARK 3 S21: 0.1638 S22: -0.1388 S23: -0.4157 REMARK 3 S31: 0.0449 S32: 0.2144 S33: 0.1123 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.2767 98.3105 28.9663 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1544 REMARK 3 T33: 0.1658 T12: 0.0229 REMARK 3 T13: 0.0018 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.2707 L22: 1.2850 REMARK 3 L33: 2.2270 L12: 0.4317 REMARK 3 L13: -0.7828 L23: -0.9045 REMARK 3 S TENSOR REMARK 3 S11: 0.0499 S12: -0.0646 S13: 0.1339 REMARK 3 S21: 0.2350 S22: 0.0194 S23: 0.0699 REMARK 3 S31: -0.1964 S32: -0.0175 S33: -0.0699 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.3019 104.9492 7.5230 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.3673 REMARK 3 T33: 0.4700 T12: 0.0223 REMARK 3 T13: -0.0479 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.4004 L22: 1.5821 REMARK 3 L33: 2.4435 L12: -1.4860 REMARK 3 L13: -1.8274 L23: 1.9455 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.2817 S13: 0.2395 REMARK 3 S21: -0.0830 S22: -0.2134 S23: 0.2871 REMARK 3 S31: -0.4430 S32: -0.3980 S33: 0.1255 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.4820 102.0615 -6.4546 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.2911 REMARK 3 T33: 0.2357 T12: -0.0186 REMARK 3 T13: 0.0114 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.6360 L22: 1.9072 REMARK 3 L33: 1.6400 L12: -0.7548 REMARK 3 L13: -0.1170 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.4376 S13: 0.3728 REMARK 3 S21: -0.3631 S22: -0.0736 S23: -0.0615 REMARK 3 S31: 0.1460 S32: 0.0561 S33: 0.0329 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.9426 96.0121 -3.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.3804 REMARK 3 T33: 0.2667 T12: 0.0112 REMARK 3 T13: -0.0510 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 3.5491 L22: 1.6789 REMARK 3 L33: 0.4450 L12: 1.1837 REMARK 3 L13: -0.9687 L23: -0.4352 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: 0.3919 S13: 0.2946 REMARK 3 S21: -0.2774 S22: 0.0992 S23: 0.2288 REMARK 3 S31: 0.1425 S32: 0.2183 S33: 0.0136 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 79.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.51650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.79150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.52050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.79150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.51650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.52050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 232 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 14 CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CE NZ REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 77 CD OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 HIS B 204 ND1 CD2 CE1 NE2 REMARK 470 LYS B 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -133.32 54.87 REMARK 500 TYR B 111 -133.05 54.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 545 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOV A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOV B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOV GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOV SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOV GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOV SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JAH A 301 14 HET JAH B 301 14 HETNAM JAH (6-PHENYLPYRIDIN-3-YL)METHANAMINE FORMUL 3 JAH 2(C12 H12 N2) FORMUL 5 HOH *286(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 3.14 CISPEP 2 ARG B 186 PRO B 187 0 2.89 SITE 1 AC1 11 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 11 TYR A 111 SER A 132 ILE A 133 TYR A 136 SITE 3 AC1 11 LEU A 138 ASN A 139 GLY A 140 SITE 1 AC2 11 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC2 11 TYR B 111 SER B 132 ILE B 133 TYR B 136 SITE 3 AC2 11 LEU B 138 ASN B 139 GLY B 140 CRYST1 75.033 79.041 87.583 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013327 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011418 0.00000