HEADER TRANSFERASE 12-FEB-19 6QOW TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH FRAGMENT 26 (6- TITLE 3 METHOXYBENZOTHIAZOLE-2-CARBOXYLIC ACID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 3 26-AUG-20 6QOW 1 JRNL REVDAT 2 05-AUG-20 6QOW 1 JRNL REVDAT 1 26-FEB-20 6QOW 0 JRNL AUTH S.E.THOMAS,A.J.WHITEHOUSE,K.BROWN,S.BURBAUD, JRNL AUTH 2 J.M.BELARDINELLI,J.SANGEN,R.LAHIRI,M.D.J.LIBARDO,P.GUPTA, JRNL AUTH 3 S.MALHOTRA,H.I.M.BOSHOFF,M.JACKSON,C.ABELL,A.G.COYNE, JRNL AUTH 4 T.L.BLUNDELL,R.A.FLOTO,V.MENDES JRNL TITL FRAGMENT-BASED DISCOVERY OF A NEW CLASS OF INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIAL TRNA MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 48 8099 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32602532 JRNL DOI 10.1093/NAR/GKAA539 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 80066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 3859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.5255 - 4.6307 0.99 2931 141 0.1754 0.1834 REMARK 3 2 4.6307 - 3.6757 1.00 2799 148 0.1524 0.1606 REMARK 3 3 3.6757 - 3.2111 1.00 2758 169 0.1734 0.1912 REMARK 3 4 3.2111 - 2.9175 1.00 2752 142 0.1898 0.1789 REMARK 3 5 2.9175 - 2.7084 1.00 2752 134 0.1945 0.2291 REMARK 3 6 2.7084 - 2.5487 1.00 2741 153 0.1937 0.2351 REMARK 3 7 2.5487 - 2.4211 1.00 2702 167 0.1806 0.2272 REMARK 3 8 2.4211 - 2.3157 1.00 2704 147 0.1787 0.2098 REMARK 3 9 2.3157 - 2.2265 1.00 2714 139 0.1757 0.1883 REMARK 3 10 2.2265 - 2.1497 1.00 2731 148 0.1780 0.2162 REMARK 3 11 2.1497 - 2.0825 1.00 2745 122 0.1779 0.1934 REMARK 3 12 2.0825 - 2.0229 0.99 2706 138 0.1800 0.2230 REMARK 3 13 2.0229 - 1.9697 1.00 2692 129 0.1709 0.2005 REMARK 3 14 1.9697 - 1.9216 1.00 2754 110 0.1762 0.1828 REMARK 3 15 1.9216 - 1.8779 1.00 2693 142 0.1731 0.2070 REMARK 3 16 1.8779 - 1.8380 1.00 2703 133 0.1741 0.2244 REMARK 3 17 1.8380 - 1.8012 1.00 2713 137 0.1756 0.2148 REMARK 3 18 1.8012 - 1.7672 1.00 2724 109 0.1807 0.2215 REMARK 3 19 1.7672 - 1.7356 1.00 2720 114 0.1820 0.1963 REMARK 3 20 1.7356 - 1.7062 1.00 2707 119 0.1840 0.2203 REMARK 3 21 1.7062 - 1.6787 1.00 2698 133 0.1909 0.2654 REMARK 3 22 1.6787 - 1.6529 1.00 2686 125 0.1877 0.2209 REMARK 3 23 1.6529 - 1.6286 1.00 2704 130 0.2086 0.2276 REMARK 3 24 1.6286 - 1.6056 1.00 2684 136 0.2089 0.2308 REMARK 3 25 1.6056 - 1.5839 1.00 2709 140 0.2098 0.2544 REMARK 3 26 1.5839 - 1.5633 1.00 2666 135 0.2258 0.2692 REMARK 3 27 1.5633 - 1.5438 1.00 2652 157 0.2338 0.2524 REMARK 3 28 1.5438 - 1.5252 1.00 2667 162 0.2563 0.2935 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3390 REMARK 3 ANGLE : 1.079 4648 REMARK 3 CHIRALITY : 0.047 522 REMARK 3 PLANARITY : 0.006 603 REMARK 3 DIHEDRAL : 12.237 1241 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9621 -13.0343 22.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.2864 REMARK 3 T33: 0.1953 T12: -0.0100 REMARK 3 T13: -0.0190 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 2.0583 L22: 2.9600 REMARK 3 L33: 2.8908 L12: -0.2805 REMARK 3 L13: 0.3994 L23: -0.2166 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.6218 S13: 0.1791 REMARK 3 S21: 0.6161 S22: -0.1734 S23: -0.2417 REMARK 3 S31: -0.2593 S32: -0.1072 S33: 0.1191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6905 -1.1473 31.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.4901 T22: 0.4108 REMARK 3 T33: 0.4783 T12: 0.0753 REMARK 3 T13: 0.0084 T23: -0.1430 REMARK 3 L TENSOR REMARK 3 L11: 3.1706 L22: 3.1684 REMARK 3 L33: 1.8520 L12: -1.8663 REMARK 3 L13: 0.2418 L23: 0.5198 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.1287 S13: 0.2893 REMARK 3 S21: 0.6372 S22: -0.0093 S23: 0.6191 REMARK 3 S31: -0.0966 S32: -0.2788 S33: 0.0382 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2355 -19.9787 15.2407 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.2381 REMARK 3 T33: 0.1953 T12: -0.0080 REMARK 3 T13: 0.0170 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.5747 L22: 3.4808 REMARK 3 L33: 2.7300 L12: 1.8335 REMARK 3 L13: 1.5081 L23: 1.6408 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.2039 S13: -0.1023 REMARK 3 S21: 0.1116 S22: 0.0176 S23: 0.3689 REMARK 3 S31: 0.1392 S32: -0.2628 S33: 0.0119 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1052 -17.4214 6.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1809 REMARK 3 T33: 0.1703 T12: -0.0072 REMARK 3 T13: -0.0052 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.7114 L22: 1.2828 REMARK 3 L33: 2.1303 L12: 0.6080 REMARK 3 L13: 0.3174 L23: 0.5570 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0412 S13: -0.1525 REMARK 3 S21: 0.0276 S22: 0.0436 S23: -0.0361 REMARK 3 S31: 0.1177 S32: -0.0423 S33: -0.0488 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2661 -4.2580 12.9203 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.1940 REMARK 3 T33: 0.2190 T12: -0.0232 REMARK 3 T13: -0.0181 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6679 L22: 1.2413 REMARK 3 L33: 2.7216 L12: -0.9055 REMARK 3 L13: -0.1883 L23: 0.6406 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.0084 S13: 0.2774 REMARK 3 S21: -0.2157 S22: 0.0175 S23: 0.0421 REMARK 3 S31: -0.4654 S32: 0.2714 S33: -0.0071 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3534 -11.4508 6.9393 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1839 REMARK 3 T33: 0.1745 T12: 0.0058 REMARK 3 T13: 0.0038 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 1.7355 L22: 0.3692 REMARK 3 L33: 1.6283 L12: -0.0582 REMARK 3 L13: 0.5767 L23: 0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.0807 S13: -0.0606 REMARK 3 S21: 0.0404 S22: 0.0602 S23: 0.0065 REMARK 3 S31: -0.0321 S32: -0.0043 S33: -0.0062 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7467 -9.4648 20.3796 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1723 REMARK 3 T33: 0.1399 T12: 0.0190 REMARK 3 T13: 0.0003 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.1195 L22: 1.1624 REMARK 3 L33: 1.6266 L12: 0.8696 REMARK 3 L13: 0.7334 L23: 0.1427 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.1630 S13: 0.1092 REMARK 3 S21: 0.0667 S22: -0.0726 S23: 0.0681 REMARK 3 S31: -0.1329 S32: -0.1352 S33: 0.0031 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9518 -4.8869 41.9032 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.2085 REMARK 3 T33: 0.1960 T12: 0.0415 REMARK 3 T13: -0.0375 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9766 L22: 2.4956 REMARK 3 L33: 1.0554 L12: 0.8056 REMARK 3 L13: -0.3626 L23: 0.1409 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0529 S13: -0.1043 REMARK 3 S21: 0.2982 S22: 0.0788 S23: -0.3098 REMARK 3 S31: 0.1429 S32: 0.1822 S33: -0.0480 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7774 -2.1698 24.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.2291 T22: 0.2840 REMARK 3 T33: 0.2027 T12: -0.0508 REMARK 3 T13: 0.0464 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.9301 L22: 2.8813 REMARK 3 L33: 2.5646 L12: 0.5267 REMARK 3 L13: 1.0753 L23: 2.5857 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: 0.1774 S13: -0.1673 REMARK 3 S21: -0.2063 S22: 0.2622 S23: -0.2560 REMARK 3 S31: -0.1414 S32: 0.3168 S33: -0.1597 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4524 -21.5737 37.0694 REMARK 3 T TENSOR REMARK 3 T11: 0.3107 T22: 0.3056 REMARK 3 T33: 0.2433 T12: -0.0397 REMARK 3 T13: 0.0496 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 4.2265 L22: 4.8013 REMARK 3 L33: 2.5751 L12: -1.2250 REMARK 3 L13: -0.6867 L23: 0.7820 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.3233 S13: -0.3250 REMARK 3 S21: 0.2940 S22: -0.1847 S23: 0.6377 REMARK 3 S31: 0.1865 S32: -0.4540 S33: 0.1308 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3572 -16.4979 31.3684 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1564 REMARK 3 T33: 0.1616 T12: 0.0330 REMARK 3 T13: -0.0128 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8493 L22: 0.7638 REMARK 3 L33: 1.7746 L12: 0.4228 REMARK 3 L13: 0.5883 L23: 0.8814 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: -0.0718 S13: -0.0698 REMARK 3 S21: 0.2000 S22: 0.0437 S23: -0.0831 REMARK 3 S31: 0.1674 S32: 0.0630 S33: -0.0345 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0010 -23.9893 16.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1995 REMARK 3 T33: 0.2635 T12: 0.0051 REMARK 3 T13: 0.0201 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.0097 L22: 0.8310 REMARK 3 L33: 1.2481 L12: 0.0199 REMARK 3 L13: 0.4446 L23: -0.7265 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: 0.0634 S13: -0.2447 REMARK 3 S21: -0.0216 S22: -0.0520 S23: -0.1059 REMARK 3 S31: 0.2940 S32: -0.0484 S33: 0.0319 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0025 -18.5191 -4.7927 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.3605 REMARK 3 T33: 0.2652 T12: -0.0128 REMARK 3 T13: 0.0201 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 3.0559 L22: 0.1144 REMARK 3 L33: -0.1093 L12: -0.0269 REMARK 3 L13: 0.6432 L23: 0.1451 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.5411 S13: -0.1977 REMARK 3 S21: -0.1735 S22: 0.0919 S23: -0.1630 REMARK 3 S31: -0.0032 S32: 0.1987 S33: -0.0530 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QOW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80140 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 78.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.78500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.84650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.07600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.07600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.84650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 ALA B 27 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 ARG B 17 NE CZ NH1 NH2 REMARK 470 SER B 19 OG REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 VAL B 159 CG1 CG2 REMARK 470 THR B 233 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -136.69 53.56 REMARK 500 VAL A 159 -73.11 -101.48 REMARK 500 ARG B 17 52.89 -68.53 REMARK 500 TYR B 111 -137.57 54.74 REMARK 500 ARG B 223 59.54 -140.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 580 DISTANCE = 6.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBZ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JBZ B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QOW A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QOW B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QOW GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOW SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOW GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QOW SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JBZ A 301 14 HET SO4 B 301 5 HET JBZ B 302 14 HETNAM JBZ 6-METHOXY-1,3-BENZOTHIAZOLE-2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 3 JBZ 2(C9 H7 N O3 S) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *383(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 SER A 19 1 7 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 ARG B 17 5 9 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 ALA B 123 1 8 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N VAL A 5 O HIS A 35 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O GLU A 130 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O GLU B 130 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 1.25 CISPEP 2 ARG A 186 PRO A 187 0 3.36 CISPEP 3 ARG B 186 PRO B 187 0 2.51 SITE 1 AC1 12 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 12 TYR A 111 SER A 132 ILE A 133 GLY A 134 SITE 3 AC1 12 TYR A 136 LEU A 138 GLY A 140 GLY A 141 SITE 1 AC2 2 ARG B 129 HOH B 403 SITE 1 AC3 13 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC3 13 ARG B 110 TYR B 111 SER B 132 ILE B 133 SITE 3 AC3 13 GLY B 134 TYR B 136 LEU B 138 GLY B 140 SITE 4 AC3 13 GLY B 141 CRYST1 75.693 78.160 88.152 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012794 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011344 0.00000