HEADER HYDROLASE 14-FEB-19 6QPR TITLE RHIZOMUCOR MIEHEI LIPASE PROPEPTIDE COMPLEX, SER95/ILE96 DELETION TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOMUCOR MIEHEI; SOURCE 3 ORGANISM_TAXID: 4839; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LIPASE, PROPEPTIDE, INTRAMOLECULAR CHAPERONE, INHIBITION, DELETION KEYWDS 2 MUTANT, FUNGAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.BLAGOVA,V.REISER,R.SAIKIA,S.DALAL,C.I.JORGENSEN, AUTHOR 2 L.BAUNSGAARD,B.ANDERSEN,A.SVENDSEN,K.S.WILSON REVDAT 6 24-JAN-24 6QPR 1 HETSYN REVDAT 5 29-JUL-20 6QPR 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 16-OCT-19 6QPR 1 REMARK REVDAT 3 04-SEP-19 6QPR 1 JRNL REVDAT 2 10-JUL-19 6QPR 1 REMARK REVDAT 1 13-MAR-19 6QPR 0 JRNL AUTH O.V.MOROZ,E.BLAGOVA,V.REISER,R.SAIKIA,S.DALAL,C.I.JORGENSEN, JRNL AUTH 2 V.K.BHATIA,L.BAUNSGAARD,B.ANDERSEN,A.SVENDSEN,K.S.WILSON JRNL TITL NOVEL INHIBITORY FUNCTION OF THERHIZOMUCOR MIEHEILIPASE JRNL TITL 2 PROPEPTIDE AND THREE-DIMENSIONAL STRUCTURES OF ITS COMPLEXES JRNL TITL 3 WITH THE ENZYME. JRNL REF ACS OMEGA V. 4 9964 2019 JRNL REFN ESSN 2470-1343 JRNL PMID 31460089 JRNL DOI 10.1021/ACSOMEGA.9B00612 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 55606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2538 ; 0.017 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 2185 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3481 ; 1.985 ; 1.783 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5135 ; 0.664 ; 1.739 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 7.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.287 ;21.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;11.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1290 ; 3.135 ; 1.463 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1291 ; 3.134 ; 1.463 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1616 ; 3.768 ; 2.210 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1617 ; 3.767 ; 2.210 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 4.199 ; 1.761 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 4.197 ; 1.761 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1866 ; 4.633 ; 2.523 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2787 ; 4.663 ;18.745 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2749 ; 4.585 ;18.468 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4723 ; 4.667 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 181 ;25.070 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4728 ;18.208 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6QPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NA FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.34800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.34800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 TYR A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 ILE A 14 REMARK 465 VAL A 15 REMARK 465 PHE A 16 REMARK 465 PHE A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 PHE A 20 REMARK 465 LEU A 21 REMARK 465 VAL A 22 REMARK 465 GLU A 23 REMARK 465 ALA A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 ARG A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 ASP A 36 REMARK 465 SER A 91 REMARK 465 VAL A 92 REMARK 465 VAL A 93 REMARK 465 GLN A 94 REMARK 465 ALA A 95 REMARK 465 MET A 96 REMARK 465 ASP A 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 51 CB OG REMARK 470 ARG A 124 CZ NH1 NH2 REMARK 470 LYS A 231 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 329 O HOH A 686 2.09 REMARK 500 CG2 THR A 55 O HOH A 780 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 657 O HOH A 749 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 350 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 34.80 -144.16 REMARK 500 TRP A 132 59.99 -97.91 REMARK 500 TRP A 132 54.91 -97.91 REMARK 500 ASP A 133 64.10 -108.09 REMARK 500 SER A 238 -133.23 64.41 REMARK 500 SER A 259 -169.69 -160.47 REMARK 500 ASN A 262 15.92 -141.22 REMARK 500 GLU A 295 -120.36 48.39 REMARK 500 CYS A 338 -124.66 -112.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 180 0.10 SIDE CHAIN REMARK 500 TYR A 354 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 856 DISTANCE = 5.85 ANGSTROMS DBREF 6QPR A 1 363 UNP P19515 LIP_RHIMI 1 363 SEQADV 6QPR A UNP P19515 SER 95 DELETION SEQADV 6QPR A UNP P19515 ILE 96 DELETION SEQRES 1 A 361 MET VAL LEU LYS GLN ARG ALA ASN TYR LEU GLY PHE LEU SEQRES 2 A 361 ILE VAL PHE PHE THR ALA PHE LEU VAL GLU ALA VAL PRO SEQRES 3 A 361 ILE LYS ARG GLN SER ASN SER THR VAL ASP SER LEU PRO SEQRES 4 A 361 PRO LEU ILE PRO SER ARG THR SER ALA PRO SER SER SER SEQRES 5 A 361 PRO SER THR THR ASP PRO GLU ALA PRO ALA MET SER ARG SEQRES 6 A 361 ASN GLY PRO LEU PRO SER ASP VAL GLU THR LYS TYR GLY SEQRES 7 A 361 MET ALA LEU ASN ALA THR SER TYR PRO ASP SER VAL VAL SEQRES 8 A 361 GLN ALA MET ASP GLY GLY ILE ARG ALA ALA THR SER GLN SEQRES 9 A 361 GLU ILE ASN GLU LEU THR TYR TYR THR THR LEU SER ALA SEQRES 10 A 361 ASN SER TYR CYS ARG THR VAL ILE PRO GLY ALA THR TRP SEQRES 11 A 361 ASP CYS ILE HIS CYS ASP ALA THR GLU ASP LEU LYS ILE SEQRES 12 A 361 ILE LYS THR TRP SER THR LEU ILE TYR ASP THR ASN ALA SEQRES 13 A 361 MET VAL ALA ARG GLY ASP SER GLU LYS THR ILE TYR ILE SEQRES 14 A 361 VAL PHE ARG GLY SER SER SER ILE ARG ASN TRP ILE ALA SEQRES 15 A 361 ASP LEU THR PHE VAL PRO VAL SER TYR PRO PRO VAL SER SEQRES 16 A 361 GLY THR LYS VAL HIS LYS GLY PHE LEU ASP SER TYR GLY SEQRES 17 A 361 GLU VAL GLN ASN GLU LEU VAL ALA THR VAL LEU ASP GLN SEQRES 18 A 361 PHE LYS GLN TYR PRO SER TYR LYS VAL ALA VAL THR GLY SEQRES 19 A 361 HIS SER LEU GLY GLY ALA THR ALA LEU LEU CYS ALA LEU SEQRES 20 A 361 ASP LEU TYR GLN ARG GLU GLU GLY LEU SER SER SER ASN SEQRES 21 A 361 LEU PHE LEU TYR THR GLN GLY GLN PRO ARG VAL GLY ASP SEQRES 22 A 361 PRO ALA PHE ALA ASN TYR VAL VAL SER THR GLY ILE PRO SEQRES 23 A 361 TYR ARG ARG THR VAL ASN GLU ARG ASP ILE VAL PRO HIS SEQRES 24 A 361 LEU PRO PRO ALA ALA PHE GLY PHE LEU HIS ALA GLY GLU SEQRES 25 A 361 GLU TYR TRP ILE THR ASP ASN SER PRO GLU THR VAL GLN SEQRES 26 A 361 VAL CYS THR SER ASP LEU GLU THR SER ASP CYS SER ASN SEQRES 27 A 361 SER ILE VAL PRO PHE THR SER VAL LEU ASP HIS LEU SER SEQRES 28 A 361 TYR PHE GLY ILE ASN THR GLY LEU CYS THR HET NAG A 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *256(H2 O) HELIX 1 AA1 ILE A 42 THR A 46 5 5 HELIX 2 AA2 GLU A 59 ASN A 66 1 8 HELIX 3 AA3 THR A 104 SER A 121 1 18 HELIX 4 AA4 HIS A 136 GLU A 141 5 6 HELIX 5 AA5 SER A 178 LEU A 186 1 9 HELIX 6 AA6 LYS A 203 TYR A 227 1 25 HELIX 7 AA7 SER A 238 GLU A 255 1 18 HELIX 8 AA8 ASP A 275 THR A 285 1 11 HELIX 9 AA9 ILE A 298 LEU A 302 5 5 HELIX 10 AB1 PRO A 304 GLY A 308 5 5 HELIX 11 AB2 CYS A 338 ILE A 342 5 5 HELIX 12 AB3 VAL A 348 HIS A 351 5 4 SHEET 1 AA1 2 THR A 75 LYS A 76 0 SHEET 2 AA1 2 MET A 79 ALA A 80 -1 O MET A 79 N LYS A 76 SHEET 1 AA2 9 ILE A 100 ALA A 102 0 SHEET 2 AA2 9 THR A 325 CYS A 329 -1 O VAL A 328 N ARG A 101 SHEET 3 AA2 9 GLU A 314 ASP A 320 -1 N TRP A 317 O GLN A 327 SHEET 4 AA2 9 TYR A 289 ASN A 294 1 N ARG A 291 O GLU A 314 SHEET 5 AA2 9 LEU A 263 GLN A 268 1 N THR A 267 O THR A 292 SHEET 6 AA2 9 LYS A 231 HIS A 237 1 N VAL A 234 O TYR A 266 SHEET 7 AA2 9 THR A 168 PHE A 173 1 N ILE A 169 O LYS A 231 SHEET 8 AA2 9 ASN A 157 GLY A 163 -1 N GLY A 163 O THR A 168 SHEET 9 AA2 9 LYS A 144 SER A 150 -1 N LYS A 144 O ARG A 162 SHEET 1 AA3 2 PRO A 190 SER A 192 0 SHEET 2 AA3 2 LYS A 200 HIS A 202 -1 O VAL A 201 N VAL A 191 SHEET 1 AA4 2 SER A 353 TYR A 354 0 SHEET 2 AA4 2 ILE A 357 ASN A 358 -1 O ILE A 357 N TYR A 354 SSBOND 1 CYS A 123 CYS A 362 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 137 1555 1555 2.01 SSBOND 3 CYS A 329 CYS A 338 1555 1555 2.09 LINK ND2 ASN A 82 C1 NAG A 501 1555 1555 1.44 CISPEP 1 GLY A 67 PRO A 68 0 -16.56 CISPEP 2 ILE A 127 PRO A 128 0 9.02 CISPEP 3 LEU A 302 PRO A 303 0 -21.33 CISPEP 4 SER A 322 PRO A 323 0 -4.08 CISPEP 5 VAL A 343 PRO A 344 0 1.06 CRYST1 98.696 61.374 62.814 90.00 111.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010132 0.000000 0.004063 0.00000 SCALE2 0.000000 0.016294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017152 0.00000