HEADER TRANSFERASE 19-FEB-19 6QQT TITLE CRYSTAL STRUCTURE OF TRMD, A TRNA-(N1G37) METHYLTRANSFERASE, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 ATCC: 19977; SOURCE 5 GENE: TRMD, MAB_3226C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRMD, TRNA METHYLTRANSFERASE, SPOUT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.J.WHITEHOUSE,A.G.COYNE,C.ABELL,V.MENDES,T.L.BLUNDELL REVDAT 2 24-JAN-24 6QQT 1 REMARK REVDAT 1 18-SEP-19 6QQT 0 JRNL AUTH A.J.WHITEHOUSE,S.E.THOMAS,K.P.BROWN,A.FANOURAKIS,D.S.CHAN, JRNL AUTH 2 M.D.J.LIBARDO,V.MENDES,H.I.M.BOSHOFF,R.A.FLOTO,C.ABELL, JRNL AUTH 3 T.L.BLUNDELL,A.G.COYNE JRNL TITL DEVELOPMENT OF INHIBITORS AGAINSTMYCOBACTERIUM ABSCESSUSTRNA JRNL TITL 2 (M1G37) METHYLTRANSFERASE (TRMD) USING FRAGMENT-BASED JRNL TITL 3 APPROACHES. JRNL REF J.MED.CHEM. V. 62 7210 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31282680 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00809 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7602 - 4.5393 1.00 3000 152 0.1629 0.1936 REMARK 3 2 4.5393 - 3.6034 1.00 2886 142 0.1425 0.1900 REMARK 3 3 3.6034 - 3.1481 1.00 2823 165 0.1736 0.2173 REMARK 3 4 3.1481 - 2.8603 1.00 2807 151 0.1924 0.2165 REMARK 3 5 2.8603 - 2.6553 1.00 2822 141 0.1930 0.1963 REMARK 3 6 2.6553 - 2.4988 1.00 2812 146 0.1831 0.2171 REMARK 3 7 2.4988 - 2.3736 1.00 2806 132 0.1746 0.2013 REMARK 3 8 2.3736 - 2.2703 1.00 2790 145 0.1715 0.2187 REMARK 3 9 2.2703 - 2.1829 1.00 2817 125 0.1697 0.1900 REMARK 3 10 2.1829 - 2.1076 1.00 2795 130 0.1716 0.1924 REMARK 3 11 2.1076 - 2.0417 1.00 2763 154 0.1645 0.1985 REMARK 3 12 2.0417 - 1.9833 1.00 2773 148 0.1710 0.2128 REMARK 3 13 1.9833 - 1.9311 1.00 2775 144 0.1657 0.1878 REMARK 3 14 1.9311 - 1.8840 1.00 2778 148 0.1762 0.2257 REMARK 3 15 1.8840 - 1.8412 1.00 2765 129 0.1929 0.2276 REMARK 3 16 1.8412 - 1.8020 1.00 2772 140 0.1949 0.2372 REMARK 3 17 1.8020 - 1.7659 1.00 2768 140 0.2038 0.2229 REMARK 3 18 1.7659 - 1.7326 1.00 2749 147 0.2084 0.2170 REMARK 3 19 1.7326 - 1.7017 1.00 2777 138 0.2349 0.2613 REMARK 3 20 1.7017 - 1.6728 1.00 2776 150 0.2505 0.2736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3349 REMARK 3 ANGLE : 0.975 4599 REMARK 3 CHIRALITY : 0.042 518 REMARK 3 PLANARITY : 0.006 591 REMARK 3 DIHEDRAL : 12.530 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1162 13.0225 -22.3404 REMARK 3 T TENSOR REMARK 3 T11: 0.3485 T22: 0.4460 REMARK 3 T33: 0.2665 T12: 0.0111 REMARK 3 T13: 0.0037 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.4031 L22: 2.7105 REMARK 3 L33: 1.9753 L12: 0.0165 REMARK 3 L13: -0.7546 L23: 0.1105 REMARK 3 S TENSOR REMARK 3 S11: 0.0865 S12: 0.7234 S13: -0.1522 REMARK 3 S21: -0.6501 S22: -0.2691 S23: -0.1397 REMARK 3 S31: 0.3853 S32: -0.3612 S33: 0.0174 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2367 18.8024 -14.2449 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.3257 REMARK 3 T33: 0.3156 T12: 0.0007 REMARK 3 T13: -0.0252 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.2154 L22: 1.7425 REMARK 3 L33: 2.5156 L12: 0.0274 REMARK 3 L13: -0.6196 L23: 0.6078 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.2986 S13: 0.0480 REMARK 3 S21: -0.2520 S22: 0.0925 S23: 0.0547 REMARK 3 S31: -0.1541 S32: -0.2309 S33: -0.0246 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7685 10.1106 -11.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2212 REMARK 3 T33: 0.2299 T12: -0.0212 REMARK 3 T13: -0.0055 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1483 L22: 0.5756 REMARK 3 L33: 1.5921 L12: -0.0612 REMARK 3 L13: -0.6516 L23: 0.1971 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: 0.0509 S13: -0.0870 REMARK 3 S21: -0.0324 S22: 0.0665 S23: 0.0338 REMARK 3 S31: 0.1157 S32: -0.0546 S33: 0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2762 0.6532 -25.2112 REMARK 3 T TENSOR REMARK 3 T11: 0.4936 T22: 0.3960 REMARK 3 T33: 0.3438 T12: -0.1311 REMARK 3 T13: -0.0986 T23: -0.2262 REMARK 3 L TENSOR REMARK 3 L11: 4.5181 L22: 1.0010 REMARK 3 L33: 0.3680 L12: 1.5250 REMARK 3 L13: -0.2017 L23: -0.4376 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.2722 S13: -0.5547 REMARK 3 S21: -0.4625 S22: -0.3068 S23: 0.0192 REMARK 3 S31: 0.4906 S32: -0.1545 S33: -0.2630 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3519 4.7863 -41.0487 REMARK 3 T TENSOR REMARK 3 T11: 0.3937 T22: 0.3133 REMARK 3 T33: 0.2893 T12: -0.0712 REMARK 3 T13: 0.0745 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.3158 L22: 1.7953 REMARK 3 L33: 1.3371 L12: -0.4964 REMARK 3 L13: -0.3983 L23: -0.3363 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: -0.0049 S13: 0.1569 REMARK 3 S21: -0.5922 S22: 0.1595 S23: -0.5519 REMARK 3 S31: -0.0876 S32: 0.2602 S33: -0.0283 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7761 2.0399 -24.2203 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: 0.3683 REMARK 3 T33: 0.2750 T12: 0.0296 REMARK 3 T13: -0.0501 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.4103 L22: 3.0423 REMARK 3 L33: 3.5315 L12: -0.9624 REMARK 3 L13: -1.4353 L23: 2.7129 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: -0.1652 S13: 0.0611 REMARK 3 S21: 0.2803 S22: 0.2153 S23: -0.2012 REMARK 3 S31: 0.2528 S32: 0.3326 S33: -0.0604 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7073 23.7196 -31.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.4649 REMARK 3 T33: 0.3981 T12: 0.0218 REMARK 3 T13: -0.0063 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.3611 L22: 1.8005 REMARK 3 L33: 1.9512 L12: 0.2505 REMARK 3 L13: -0.6462 L23: 0.5860 REMARK 3 S TENSOR REMARK 3 S11: 0.1491 S12: 0.0111 S13: 0.2484 REMARK 3 S21: 0.3742 S22: -0.0355 S23: 0.7108 REMARK 3 S31: -0.1040 S32: -0.7986 S33: -0.0704 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7327 22.4631 -38.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.4209 T22: 0.4991 REMARK 3 T33: 0.3468 T12: 0.0184 REMARK 3 T13: -0.0627 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 2.5847 L22: 0.1263 REMARK 3 L33: 4.6038 L12: -0.5039 REMARK 3 L13: -1.3139 L23: 0.0532 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.7296 S13: 0.5056 REMARK 3 S21: -0.7432 S22: 0.1707 S23: 0.3010 REMARK 3 S31: -0.1792 S32: -0.1922 S33: -0.2230 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5111 4.6521 -42.1762 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.3499 REMARK 3 T33: 0.2864 T12: -0.0424 REMARK 3 T13: -0.0135 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.5631 L22: 4.2186 REMARK 3 L33: 0.9620 L12: -0.7969 REMARK 3 L13: -1.2979 L23: 1.1979 REMARK 3 S TENSOR REMARK 3 S11: -0.1394 S12: 0.4941 S13: -0.3114 REMARK 3 S21: -0.2519 S22: -0.0025 S23: 0.7611 REMARK 3 S31: -0.1808 S32: -0.2131 S33: -0.0755 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8255 20.2025 -29.6198 REMARK 3 T TENSOR REMARK 3 T11: 0.2966 T22: 0.2428 REMARK 3 T33: 0.2544 T12: -0.0440 REMARK 3 T13: 0.0094 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.3972 L22: 1.1230 REMARK 3 L33: 2.2197 L12: -0.3207 REMARK 3 L13: -0.7092 L23: 0.6826 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.1323 S13: 0.1580 REMARK 3 S21: -0.3101 S22: 0.0383 S23: -0.0793 REMARK 3 S31: -0.2421 S32: -0.0328 S33: -0.1539 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3314 18.7527 -33.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.3416 T22: 0.2892 REMARK 3 T33: 0.3053 T12: -0.0952 REMARK 3 T13: 0.0389 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.4108 L22: 1.1594 REMARK 3 L33: 2.0095 L12: -0.3072 REMARK 3 L13: -1.0297 L23: 1.2830 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0417 S13: 0.0141 REMARK 3 S21: -0.4492 S22: 0.2675 S23: -0.2147 REMARK 3 S31: -0.1341 S32: 0.3374 S33: -0.1948 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0104 19.3760 -18.2038 REMARK 3 T TENSOR REMARK 3 T11: 0.2427 T22: 0.2694 REMARK 3 T33: 0.3131 T12: -0.0064 REMARK 3 T13: -0.0230 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.5078 L22: 0.5603 REMARK 3 L33: 2.0291 L12: -0.3224 REMARK 3 L13: -0.9909 L23: -0.6376 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: 0.0378 S13: 0.2399 REMARK 3 S21: -0.0336 S22: -0.0112 S23: -0.0322 REMARK 3 S31: -0.1816 S32: -0.1347 S33: -0.0995 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5487 22.4632 6.4016 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.3901 REMARK 3 T33: 0.3451 T12: 0.0363 REMARK 3 T13: 0.0077 T23: -0.0799 REMARK 3 L TENSOR REMARK 3 L11: 2.3754 L22: 1.0650 REMARK 3 L33: 1.6078 L12: -0.1250 REMARK 3 L13: -0.6161 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: -0.5961 S13: 0.6261 REMARK 3 S21: 0.4186 S22: -0.0067 S23: 0.2546 REMARK 3 S31: 0.1307 S32: 0.1118 S33: -0.0554 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6405 19.5030 6.2275 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.5512 REMARK 3 T33: 0.3639 T12: 0.0249 REMARK 3 T13: -0.0678 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 2.4245 L22: 3.8691 REMARK 3 L33: 4.0923 L12: -1.3584 REMARK 3 L13: -1.7515 L23: 3.3200 REMARK 3 S TENSOR REMARK 3 S11: -0.2428 S12: -0.7717 S13: 0.4444 REMARK 3 S21: 0.7198 S22: 0.3597 S23: -0.2778 REMARK 3 S31: 0.2425 S32: 0.1919 S33: -0.1455 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 223 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2508 9.7159 -1.6476 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.3564 REMARK 3 T33: 0.4726 T12: -0.0385 REMARK 3 T13: -0.0333 T23: -0.0548 REMARK 3 L TENSOR REMARK 3 L11: 5.0679 L22: 3.2536 REMARK 3 L33: 5.1240 L12: -2.8027 REMARK 3 L13: 0.6369 L23: -1.3292 REMARK 3 S TENSOR REMARK 3 S11: 0.1808 S12: 0.1936 S13: -0.6976 REMARK 3 S21: -0.0977 S22: -0.0231 S23: -0.3359 REMARK 3 S31: 0.6329 S32: -0.2041 S33: -0.0404 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6QQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1292100702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 86.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 6NVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5 -7.0, 1 REMARK 280 -2 M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.29550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.31800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.93100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.31800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.29550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.93100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 161 REMARK 465 ASN A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY A 174 REMARK 465 MET A 175 REMARK 465 ALA A 176 REMARK 465 GLY A 228 REMARK 465 PHE A 229 REMARK 465 ASP A 230 REMARK 465 SER A 231 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 GLU A 235 REMARK 465 HIS A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLY A 240 REMARK 465 LEU A 241 REMARK 465 SER A 242 REMARK 465 GLY B -1 REMARK 465 SER B 19 REMARK 465 LEU B 20 REMARK 465 PRO B 21 REMARK 465 GLY B 22 REMARK 465 LYS B 23 REMARK 465 ALA B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 HIS B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 160 REMARK 465 GLY B 161 REMARK 465 ASN B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 GLN B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 465 GLY B 174 REMARK 465 MET B 175 REMARK 465 ALA B 176 REMARK 465 THR B 233 REMARK 465 GLY B 234 REMARK 465 GLU B 235 REMARK 465 HIS B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 SER B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 14 CG CD OE1 NE2 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 ARG A 39 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 SER A 177 OG REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 LEU B 29 CG CD1 CD2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ARG B 39 NE CZ NH1 NH2 REMARK 470 HIS B 42 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 VAL B 44 CG1 CG2 REMARK 470 SER B 47 OG REMARK 470 GLU B 77 OE1 OE2 REMARK 470 VAL B 159 CG1 CG2 REMARK 470 SER B 177 OG REMARK 470 LEU B 178 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -129.90 54.72 REMARK 500 ARG A 125 -0.03 -141.47 REMARK 500 VAL A 159 -61.40 -95.39 REMARK 500 PRO B 15 -3.24 -59.77 REMARK 500 TYR B 111 -134.86 52.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JCH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JCH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NVR RELATED DB: PDB DBREF 6QQT A 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 DBREF 6QQT B 1 242 UNP B1MDI3 B1MDI3_MYCA9 1 242 SEQADV 6QQT GLY A -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQT SER A 0 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQT GLY B -1 UNP B1MDI3 EXPRESSION TAG SEQADV 6QQT SER B 0 UNP B1MDI3 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 A 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 A 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 A 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 A 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 A 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 A 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 A 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 A 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 A 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 A 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 A 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 A 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 A 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 A 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 A 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 A 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 A 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 A 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER SEQRES 1 B 244 GLY SER MET LYS ILE ASP VAL VAL THR ILE PHE PRO GLU SEQRES 2 B 244 TYR LEU GLN PRO VAL ARG GLN SER LEU PRO GLY LYS ALA SEQRES 3 B 244 ILE ASP ALA GLY LEU VAL ASP VAL ALA VAL HIS ASP LEU SEQRES 4 B 244 ARG ARG TRP THR HIS ASP VAL HIS LYS SER VAL ASP ASP SEQRES 5 B 244 SER PRO TYR GLY GLY GLY PRO GLY MET VAL MET LYS PRO SEQRES 6 B 244 THR VAL TRP GLY ASP ALA LEU ASP GLU ILE CYS THR SER SEQRES 7 B 244 GLU THR LEU LEU VAL VAL PRO THR PRO ALA GLY TYR PRO SEQRES 8 B 244 PHE THR GLN GLU THR ALA TRP GLN TRP SER THR GLU ASP SEQRES 9 B 244 HIS LEU VAL ILE ALA CYS GLY ARG TYR GLU GLY ILE ASP SEQRES 10 B 244 GLN ARG VAL ALA ASP ASP ALA ALA THR ARG MET ARG VAL SEQRES 11 B 244 ARG GLU VAL SER ILE GLY ASP TYR VAL LEU ASN GLY GLY SEQRES 12 B 244 GLU ALA ALA ALA LEU VAL ILE ILE GLU ALA VAL LEU ARG SEQRES 13 B 244 LEU VAL PRO GLY VAL LEU GLY ASN ALA LEU SER ALA GLN SEQRES 14 B 244 GLU ASP SER HIS SER GLU GLY MET ALA SER LEU LEU GLU SEQRES 15 B 244 GLY PRO SER TYR THR ARG PRO PRO SER TRP ARG GLY MET SEQRES 16 B 244 ASP VAL PRO PRO VAL LEU LEU SER GLY ASP HIS ALA LYS SEQRES 17 B 244 ILE ALA ALA TRP ARG ALA GLU GLN SER ARG GLN ARG THR SEQRES 18 B 244 ILE GLU ARG ARG PRO ASP LEU LEU GLY PHE ASP SER PRO SEQRES 19 B 244 THR GLY GLU HIS GLY GLY ASP GLY LEU SER HET JCH A 301 24 HET SO4 A 302 5 HET JCH B 301 24 HET SO4 B 302 5 HETNAM JCH 3-[1-[(4-METHOXYPHENYL)METHYL]INDOL-6-YL]-1~{H}- HETNAM 2 JCH PYRAZOL-5-AMINE HETNAM SO4 SULFATE ION FORMUL 3 JCH 2(C19 H18 N4 O) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *231(H2 O) HELIX 1 AA1 PHE A 9 TYR A 12 5 4 HELIX 2 AA2 LEU A 13 LEU A 20 1 8 HELIX 3 AA3 PRO A 21 ALA A 27 1 7 HELIX 4 AA4 ARG A 38 THR A 41 5 4 HELIX 5 AA5 LYS A 62 CYS A 74 1 13 HELIX 6 AA6 THR A 91 SER A 99 1 9 HELIX 7 AA7 GLN A 116 ALA A 123 1 8 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 196 SER A 201 5 6 HELIX 10 AB1 ASP A 203 ARG A 223 1 21 HELIX 11 AB2 PRO A 224 LEU A 227 5 4 HELIX 12 AB3 PHE B 9 GLN B 18 5 10 HELIX 13 AB4 ARG B 38 THR B 41 5 4 HELIX 14 AB5 LYS B 62 CYS B 74 1 13 HELIX 15 AB6 THR B 91 SER B 99 1 9 HELIX 16 AB7 GLN B 116 THR B 124 1 9 HELIX 17 AB8 GLY B 141 ARG B 154 1 14 HELIX 18 AB9 PRO B 196 SER B 201 5 6 HELIX 19 AC1 ASP B 203 ARG B 223 1 21 HELIX 20 AC2 PRO B 224 GLY B 228 5 5 SHEET 1 AA1 6 VAL A 30 ASP A 36 0 SHEET 2 AA1 6 MET A 1 THR A 7 1 N ILE A 3 O ASP A 31 SHEET 3 AA1 6 HIS A 103 ALA A 107 1 O ILE A 106 N ASP A 4 SHEET 4 AA1 6 LEU A 79 PRO A 83 1 N VAL A 81 O VAL A 105 SHEET 5 AA1 6 ARG A 127 SER A 132 1 O ARG A 129 N LEU A 80 SHEET 6 AA1 6 TYR A 88 PRO A 89 1 N TYR A 88 O SER A 132 SHEET 1 AA2 2 ASP A 49 ASP A 50 0 SHEET 2 AA2 2 VAL A 60 MET A 61 -1 O VAL A 60 N ASP A 50 SHEET 1 AA3 2 SER A 189 TRP A 190 0 SHEET 2 AA3 2 MET A 193 ASP A 194 -1 O MET A 193 N TRP A 190 SHEET 1 AA4 6 VAL B 30 ASP B 36 0 SHEET 2 AA4 6 MET B 1 THR B 7 1 N VAL B 5 O HIS B 35 SHEET 3 AA4 6 HIS B 103 ALA B 107 1 O ILE B 106 N ASP B 4 SHEET 4 AA4 6 LEU B 79 PRO B 83 1 N VAL B 81 O VAL B 105 SHEET 5 AA4 6 ARG B 127 SER B 132 1 O ARG B 129 N LEU B 80 SHEET 6 AA4 6 TYR B 88 PRO B 89 1 N TYR B 88 O SER B 132 SHEET 1 AA5 2 ASP B 49 ASP B 50 0 SHEET 2 AA5 2 VAL B 60 MET B 61 -1 O VAL B 60 N ASP B 50 SHEET 1 AA6 2 SER B 189 TRP B 190 0 SHEET 2 AA6 2 MET B 193 ASP B 194 -1 O MET B 193 N TRP B 190 CISPEP 1 ARG A 186 PRO A 187 0 2.81 CISPEP 2 ARG B 186 PRO B 187 0 2.31 SITE 1 AC1 17 PRO A 83 THR A 84 PRO A 85 GLY A 109 SITE 2 AC1 17 ARG A 110 TYR A 111 GLU A 112 SER A 132 SITE 3 AC1 17 ILE A 133 GLY A 134 TYR A 136 VAL A 137 SITE 4 AC1 17 LEU A 138 ASN A 139 GLY A 140 GLY A 141 SITE 5 AC1 17 GLU B 180 SITE 1 AC2 8 ALA A 123 ARG A 125 MET A 126 ARG A 186 SITE 2 AC2 8 HOH A 407 ASP B 50 SER B 51 TYR B 53 SITE 1 AC3 16 PRO B 83 THR B 84 PRO B 85 GLY B 109 SITE 2 AC3 16 ARG B 110 TYR B 111 GLU B 112 SER B 132 SITE 3 AC3 16 ILE B 133 GLY B 134 TYR B 136 VAL B 137 SITE 4 AC3 16 LEU B 138 ASN B 139 GLY B 140 GLY B 141 SITE 1 AC4 2 ARG B 129 HOH B 401 CRYST1 74.591 77.862 86.636 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011543 0.00000